zr1394_15_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 10802610 lines in total Total number of methylation call strings processed: 10802610 Final Cytosine Methylation Report ================================= Total number of C's analysed: 66776329 Total methylated C's in CpG context: 9440679 Total methylated C's in CHG context: 363316 Total methylated C's in CHH context: 4683749 Total C to T conversions in CpG context: 1675246 Total C to T conversions in CHG context: 12344351 Total C to T conversions in CHH context: 38268988 C methylated in CpG context: 84.9% C methylated in CHG context: 2.9% C methylated in CHH context: 10.9%