zr1394_13_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 11234204 lines in total Total number of methylation call strings processed: 11234204 Final Cytosine Methylation Report ================================= Total number of C's analysed: 68890041 Total methylated C's in CpG context: 9111111 Total methylated C's in CHG context: 344677 Total methylated C's in CHH context: 4621384 Total C to T conversions in CpG context: 1824835 Total C to T conversions in CHG context: 12907020 Total C to T conversions in CHH context: 40081014 C methylated in CpG context: 83.3% C methylated in CHG context: 2.6% C methylated in CHH context: 10.3%