Alignment Stats
| Sequences analysed in total |
78221457 |
| Single-end alignments with a unique best hit |
25462569 |
| Sequences without alignments under any condition |
21496817 |
| Sequences that did not map uniquely |
31262071 |
| Genomic sequence context not extractable (edges of chromosomes) |
30186 |
|
|
Cytosine Methylation
| Total C's analysed |
159765962 |
| Methylated C's in CpG context |
24639901 |
| Methylated C's in CHG context |
738394 |
| Methylated C's in CHH context |
8517097 |
| Methylated C's in Unknown context |
4229 |
| Unmethylated C's in CpG context |
4431826 |
| Unmethylated C's in CHG context |
33913328 |
| Unmethylated C's in CHH context |
87525416 |
| Unmethylated C's in Unknown context |
27106 |
| Percentage methylation (CpG context) |
84.8% |
| Percentage methylation (CHG context) |
2.1% |
| Percentage methylation (CHH context) |
8.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
6528162 |
original top strand |
| CTOT |
6260193 |
complementary to original top strand |
| CTOB |
6190688 |
complementary to original bottom strand |
| OB |
6453340 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
25432383 |
| Unique alignments |
8934789 |
| Duplicates removed |
16497594 |
| Duplicated alignments were found at 3882578 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
54706781 |
| Methylated C's in CpG context |
6634857 |
| Methylated C's in CHG context |
291620 |
| Methylated C's in CHH context |
4272996 |
| Unmethylated C's in CpG context |
1559899 |
| Unmethylated C's in CHG context |
10265526 |
| Unmethylated C's in CHH context |
31681883 |
| Percentage methylation (CpG context) |
81.0% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
11.9% |
|
|
M-Bias Plot
