/gscratch/srlab/sr320/data/caligus/reads/trimmed/sl2/Sealice_F2_S22_L001_R1_001_val_1.fq.gz and /gscratch/srlab/sr320/data/caligus/reads/trimmed/sl2/Sealice_F2_S22_L001_R2_001_val_2.fq.gz
Data processed at 15:57 on 2020-02-04
Alignment Stats
Sequence pairs analysed in total
82079568
Paired-end alignments with a unique best hit
17899898
Pairs without alignments under any condition
51138153
Pairs that did not map uniquely
13041517
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
776913879
Methylated C's in CpG context
1643234
Methylated C's in CHG context
1332444
Methylated C's in CHH context
8089457
Methylated C's in Unknown context
887874
Unmethylated C's in CpG context
125034032
Unmethylated C's in CHG context
129772483
Unmethylated C's in CHH context
511042229
Unmethylated C's in Unknown context
6849496
Percentage methylation (CpG context)
1.3%
Percentage methylation (CHG context)
1.0%
Percentage methylation (CHH context)
1.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4522150
original top strand
CTOT
4446081
complementary to original top strand
CTOB
4433178
complementary to original bottom strand
OB
4498489
original bottom strand
Deduplication
Alignments analysed
17899898
Unique alignments
14474459
Duplicates removed
3425439
Duplicated alignments were found at 2305947 different positions
