/gscratch/srlab/sr320/data/caligus/reads/trimmed/sl2/Sealice_F1_S20_L002_R1_001_val_1.fq.gz and /gscratch/srlab/sr320/data/caligus/reads/trimmed/sl2/Sealice_F1_S20_L002_R2_001_val_2.fq.gz
Data processed at 15:57 on 2020-02-04
Alignment Stats
Sequence pairs analysed in total
112493002
Paired-end alignments with a unique best hit
31358065
Pairs without alignments under any condition
60671476
Pairs that did not map uniquely
20463461
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
1343425791
Methylated C's in CpG context
2886711
Methylated C's in CHG context
2595053
Methylated C's in CHH context
14140740
Methylated C's in Unknown context
1548914
Unmethylated C's in CpG context
204897578
Unmethylated C's in CHG context
214379403
Unmethylated C's in CHH context
904526306
Unmethylated C's in Unknown context
12233657
Percentage methylation (CpG context)
1.4%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
1.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8897914
original top strand
CTOT
6751598
complementary to original top strand
CTOB
6786829
complementary to original bottom strand
OB
8921722
original bottom strand
Deduplication
Alignments analysed
31358063
Unique alignments
23092109
Duplicates removed
8265954
Duplicated alignments were found at 5371098 different positions
