/gscratch/srlab/sr320/data/caligus/reads/trimmed/sl2/Sealice_F1_S20_L001_R1_001_val_1.fq.gz and /gscratch/srlab/sr320/data/caligus/reads/trimmed/sl2/Sealice_F1_S20_L001_R2_001_val_2.fq.gz
Data processed at 15:57 on 2020-02-04
Alignment Stats
Sequence pairs analysed in total
113253920
Paired-end alignments with a unique best hit
31988553
Pairs without alignments under any condition
60463531
Pairs that did not map uniquely
20801836
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
1374241887
Methylated C's in CpG context
2947829
Methylated C's in CHG context
2642920
Methylated C's in CHH context
14444000
Methylated C's in Unknown context
1591086
Unmethylated C's in CpG context
209503774
Unmethylated C's in CHG context
219185230
Unmethylated C's in CHH context
925518134
Unmethylated C's in Unknown context
12593816
Percentage methylation (CpG context)
1.4%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
1.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
9072203
original top strand
CTOT
6886524
complementary to original top strand
CTOB
6924159
complementary to original bottom strand
OB
9105666
original bottom strand
Deduplication
Alignments analysed
31988552
Unique alignments
23357515
Duplicates removed
8631037
Duplicated alignments were found at 5580519 different positions
