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        Note that additional data was saved in multiqc_data when this report was generated.

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2022-02-07, 09:37 based on data in: /gscratch/scrubbed/sr320/020122-CMoil

        General Statistics

        Showing 4/4 rows and 6/8 columns.
        Sample Name% mCpG% mCHG% mCHHM C's% Dups% Aligned
        20150414_trimmed_2112_lane1_HB16_Oil_25000ppm_TTAGGC
        62.3%
        23.0%
        32.6%
        100.6
        51.9%
        50.3%
        20150414_trimmed_2112_lane1_HB2_Oil_25000ppm_ATCACG
        66.4%
        35.8%
        45.9%
        156.4
        38.9%
        47.2%
        20150414_trimmed_2112_lane1_NB11_NoOil_CAGATC
        66.3%
        35.1%
        47.8%
        149.9
        52.1%
        50.9%
        20150414_trimmed_2112_lane1_NB6_NoOil_GCCAAT
        44.9%
        19.4%
        27.6%
        97.2
        33.8%
        38.1%

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.

        Alignment Rates

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        Deduplication

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        Strand Alignment

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        Cytosine Methylation

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        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

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        MultiQC v1.8 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.