Module Section Sample Name Source Bismark alignment 20150414_trimmed_2112_lane1_HB16_Oil_25000ppm_TTAGGC /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_HB16_Oil_25000ppm_TTAGGC_bismark_bt2_SE_report.txt Bismark alignment 20150414_trimmed_2112_lane1_NB11_NoOil_CAGATC /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_NB11_NoOil_CAGATC_bismark_bt2_SE_report.txt Bismark alignment 20150414_trimmed_2112_lane1_HB2_Oil_25000ppm_ATCACG /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_HB2_Oil_25000ppm_ATCACG_bismark_bt2_SE_report.txt Bismark alignment 20150414_trimmed_2112_lane1_NB6_NoOil_GCCAAT /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_NB6_NoOil_GCCAAT_bismark_bt2_SE_report.txt Bismark deduplication 20150414_trimmed_2112_lane1_NB11_NoOil_CAGATC /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_NB11_NoOil_CAGATC_bismark_bt2.deduplication_report.txt Bismark deduplication 20150414_trimmed_2112_lane1_NB6_NoOil_GCCAAT /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_NB6_NoOil_GCCAAT_bismark_bt2.deduplication_report.txt Bismark deduplication 20150414_trimmed_2112_lane1_HB2_Oil_25000ppm_ATCACG /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_HB2_Oil_25000ppm_ATCACG_bismark_bt2.deduplication_report.txt Bismark deduplication 20150414_trimmed_2112_lane1_HB16_Oil_25000ppm_TTAGGC /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_HB16_Oil_25000ppm_TTAGGC_bismark_bt2.deduplication_report.txt Bismark methylation_extraction 20150414_trimmed_2112_lane1_NB11_NoOil_CAGATC /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_NB11_NoOil_CAGATC_bismark_bt2.deduplicated_splitting_report.txt Bismark methylation_extraction 20150414_trimmed_2112_lane1_HB2_Oil_25000ppm_ATCACG /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_HB2_Oil_25000ppm_ATCACG_bismark_bt2.deduplicated_splitting_report.txt Bismark methylation_extraction 20150414_trimmed_2112_lane1_NB6_NoOil_GCCAAT /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_NB6_NoOil_GCCAAT_bismark_bt2.deduplicated_splitting_report.txt Bismark methylation_extraction 20150414_trimmed_2112_lane1_HB16_Oil_25000ppm_TTAGGC /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_HB16_Oil_25000ppm_TTAGGC_bismark_bt2.deduplicated_splitting_report.txt Bismark m_bias 20150414_trimmed_2112_lane1_HB16_Oil_25000ppm_TTAGGC /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_HB16_Oil_25000ppm_TTAGGC_bismark_bt2.deduplicated.M-bias.txt Bismark m_bias 20150414_trimmed_2112_lane1_NB11_NoOil_CAGATC /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_NB11_NoOil_CAGATC_bismark_bt2.deduplicated.M-bias.txt Bismark m_bias 20150414_trimmed_2112_lane1_NB6_NoOil_GCCAAT /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_NB6_NoOil_GCCAAT_bismark_bt2.deduplicated.M-bias.txt Bismark m_bias 20150414_trimmed_2112_lane1_HB2_Oil_25000ppm_ATCACG /gscratch/scrubbed/sr320/020122-CMoil/20150414_trimmed_2112_lane1_HB2_Oil_25000ppm_ATCACG_bismark_bt2.deduplicated.M-bias.txt