Alignment Stats
| Sequences analysed in total |
21462840 |
| Single-end alignments with a unique best hit |
10790387 |
| Sequences without alignments under any condition |
5480515 |
| Sequences that did not map uniquely |
5191938 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
212797610 |
| Methylated C's in CpG context |
31770372 |
| Methylated C's in CHG context |
8211495 |
| Methylated C's in CHH context |
25943978 |
| Methylated C's in Unknown context |
310267 |
| Unmethylated C's in CpG context |
14009418 |
| Unmethylated C's in CHG context |
46372561 |
| Unmethylated C's in CHH context |
86489786 |
| Unmethylated C's in Unknown context |
682173 |
| Percentage methylation (CpG context) |
69.4% |
| Percentage methylation (CHG context) |
15.0% |
| Percentage methylation (CHH context) |
23.1% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
459450 |
original top strand |
| CTOT |
4891423 |
complementary to original top strand |
| CTOB |
4973472 |
complementary to original bottom strand |
| OB |
466042 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
10790387 |
| Unique alignments |
5189978 |
| Duplicates removed |
5600409 |
| Duplicated alignments were found at 1680694 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
100573067 |
| Methylated C's in CpG context |
12227583 |
| Methylated C's in CHG context |
5548341 |
| Methylated C's in CHH context |
18517042 |
| Unmethylated C's in CpG context |
7392033 |
| Unmethylated C's in CHG context |
18592605 |
| Unmethylated C's in CHH context |
38295463 |
| Percentage methylation (CpG context) |
62.3% |
| Percentage methylation (CHG context) |
23.0% |
| Percentage methylation (CHH context) |
32.6% |
|
|
M-Bias Plot
