/gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F1_S20_L002_R1_001.fastq.gz and /gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F1_S20_L002_R2_001.fastq.gz
Data processed at 11:17 on 2020-01-31
Alignment Stats
Sequence pairs analysed in total
112706276
Paired-end alignments with a unique best hit
17528111
Pairs without alignments under any condition
86586560
Pairs that did not map uniquely
8591605
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
949354763
Methylated C's in CpG context
3989154
Methylated C's in CHG context
3288380
Methylated C's in CHH context
14679832
Methylated C's in Unknown context
2785517
Unmethylated C's in CpG context
141676841
Unmethylated C's in CHG context
148657726
Unmethylated C's in CHH context
637062830
Unmethylated C's in Unknown context
9671815
Percentage methylation (CpG context)
2.7%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
2.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4922482
original top strand
CTOT
3813994
complementary to original top strand
CTOB
3840498
complementary to original bottom strand
OB
4951136
original bottom strand
Deduplication
Alignments analysed
17528110
Unique alignments
13590786
Duplicates removed
3937324
Duplicated alignments were found at 2738599 different positions
