/gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F1_S20_L001_R1_001.fastq.gz and /gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F1_S20_L001_R2_001.fastq.gz
Data processed at 11:17 on 2020-01-31
Alignment Stats
Sequence pairs analysed in total
113474961
Paired-end alignments with a unique best hit
18071283
Pairs without alignments under any condition
86568022
Pairs that did not map uniquely
8835656
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
979199135
Methylated C's in CpG context
4118192
Methylated C's in CHG context
3393802
Methylated C's in CHH context
15178693
Methylated C's in Unknown context
2887891
Unmethylated C's in CpG context
146098875
Unmethylated C's in CHG context
153307574
Unmethylated C's in CHH context
657101999
Unmethylated C's in Unknown context
10034093
Percentage methylation (CpG context)
2.7%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
2.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5072942
original top strand
CTOT
3933628
complementary to original top strand
CTOB
3960012
complementary to original bottom strand
OB
5104700
original bottom strand
Deduplication
Alignments analysed
18071282
Unique alignments
13855515
Duplicates removed
4215767
Duplicated alignments were found at 2908157 different positions
