Alignment Stats
| Sequence pairs analysed in total |
1237279577 |
| Paired-end alignments with a unique best hit |
510447476 |
| Pairs without alignments under any condition |
612597329 |
| Pairs that did not map uniquely |
114234772 |
| Genomic sequence context not extractable (edges of chromosomes) |
86 |
|
|
Cytosine Methylation
| Total C's analysed |
15255999761 |
| Methylated C's in CpG context |
591642424 |
| Methylated C's in CHG context |
77274827 |
| Methylated C's in CHH context |
183983876 |
| Methylated C's in Unknown context |
3101698 |
| Unmethylated C's in CpG context |
1569847325 |
| Unmethylated C's in CHG context |
3194099749 |
| Unmethylated C's in CHH context |
9639151560 |
| Unmethylated C's in Unknown context |
32722537 |
| Percentage methylation (CpG context) |
27.4% |
| Percentage methylation (CHG context) |
2.4% |
| Percentage methylation (CHH context) |
1.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
252090696 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
258356694 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
510447390 |
| Unique alignments |
273534856 |
| Duplicates removed |
236912534 |
| Duplicated alignments were found at 82938427 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
5902630221 |
| Methylated C's in CpG context |
235259793 |
| Methylated C's in CHG context |
28549310 |
| Methylated C's in CHH context |
81164170 |
| Unmethylated C's in CpG context |
561418412 |
| Unmethylated C's in CHG context |
1182055762 |
| Unmethylated C's in CHH context |
3814182774 |
| Percentage methylation (CpG context) |
29.5% |
| Percentage methylation (CHG context) |
2.4% |
| Percentage methylation (CHH context) |
2.1% |
|
|
M-Bias Plot
