/gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F2_S22_L002_R1_001.fastq.gz and /gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F2_S22_L002_R2_001.fastq.gz
Data processed at 21:11 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
81699034
Paired-end alignments with a unique best hit
4675527
Pairs without alignments under any condition
74543184
Pairs that did not map uniquely
2480323
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
261577090
Methylated C's in CpG context
1398442
Methylated C's in CHG context
1106576
Methylated C's in CHH context
5115414
Methylated C's in Unknown context
974335
Unmethylated C's in CpG context
40963331
Unmethylated C's in CHG context
42673164
Unmethylated C's in CHH context
170320163
Unmethylated C's in Unknown context
2569263
Percentage methylation (CpG context)
3.3%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2346837
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
2328690
original bottom strand
Deduplication
Alignments analysed
4675527
Unique alignments
3944290
Duplicates removed
731237
Duplicated alignments were found at 528737 different positions
