/gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F2_S22_L001_R1_001.fastq.gz and /gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F2_S22_L001_R2_001.fastq.gz
Data processed at 21:11 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
82177525
Paired-end alignments with a unique best hit
4815592
Pairs without alignments under any condition
74812200
Pairs that did not map uniquely
2549733
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
269443330
Methylated C's in CpG context
1442407
Methylated C's in CHG context
1137082
Methylated C's in CHH context
5281990
Methylated C's in Unknown context
1010601
Unmethylated C's in CpG context
42169766
Unmethylated C's in CHG context
43933031
Unmethylated C's in CHH context
175479054
Unmethylated C's in Unknown context
2663577
Percentage methylation (CpG context)
3.3%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
2.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2416982
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
2398610
original bottom strand
Deduplication
Alignments analysed
4815592
Unique alignments
4022610
Duplicates removed
792982
Duplicated alignments were found at 570414 different positions
