/gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F1_S20_L002_R1_001.fastq.gz and /gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F1_S20_L002_R2_001.fastq.gz
Data processed at 21:11 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
112706276
Paired-end alignments with a unique best hit
9883349
Pairs without alignments under any condition
98036031
Pairs that did not map uniquely
4786896
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
534355619
Methylated C's in CpG context
2419146
Methylated C's in CHG context
1992060
Methylated C's in CHH context
9421424
Methylated C's in Unknown context
1713666
Unmethylated C's in CpG context
79153095
Unmethylated C's in CHG context
83267009
Unmethylated C's in CHH context
358102885
Unmethylated C's in Unknown context
5385442
Percentage methylation (CpG context)
3.0%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
2.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4927716
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4955633
original bottom strand
Deduplication
Alignments analysed
9883349
Unique alignments
7556502
Duplicates removed
2326847
Duplicated alignments were found at 1600864 different positions
