/gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F1_S20_L001_R1_001.fastq.gz and /gscratch/srlab/sr320/data/caligus/reads/raw/Sealice_F1_S20_L001_R2_001.fastq.gz
Data processed at 21:11 on 2020-01-03
Alignment Stats
Sequence pairs analysed in total
113474961
Paired-end alignments with a unique best hit
10187887
Pairs without alignments under any condition
98364893
Pairs that did not map uniquely
4922181
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
551028968
Methylated C's in CpG context
2494944
Methylated C's in CHG context
2053619
Methylated C's in CHH context
9741369
Methylated C's in Unknown context
1772643
Unmethylated C's in CpG context
81596268
Unmethylated C's in CHG context
85842553
Unmethylated C's in CHH context
369300215
Unmethylated C's in Unknown context
5582101
Percentage methylation (CpG context)
3.0%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
2.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5078535
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5109352
original bottom strand
Deduplication
Alignments analysed
10187887
Unique alignments
7700153
Duplicates removed
2487734
Duplicated alignments were found at 1695976 different positions
