CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 274112 113432 70.73 387544 2 298320 104595 74.04 402915 3 269072 101864 72.54 370936 4 254956 95889 72.67 350845 5 262484 95376 73.35 357860 6 259001 90079 74.20 349080 7 270504 100272 72.96 370776 8 266362 91591 74.41 357953 9 267475 88821 75.07 356296 10 280997 91468 75.44 372465 11 286688 92408 75.62 379096 12 283294 88197 76.26 371491 13 285940 89005 76.26 374945 14 283710 88654 76.19 372364 15 286688 87550 76.61 374238 16 290874 87587 76.86 378461 17 289559 89081 76.47 378640 18 290715 86690 77.03 377405 19 293966 87341 77.09 381307 20 295884 87548 77.17 383432 21 297112 85438 77.67 382550 22 297030 86867 77.37 383897 23 297890 86690 77.46 384580 24 298873 85117 77.83 383990 25 301036 87041 77.57 388077 26 300957 86952 77.58 387909 27 296700 84514 77.83 381214 28 303405 86566 77.80 389971 29 300464 85489 77.85 385953 30 298173 83945 78.03 382118 31 302561 85517 77.96 388078 32 303843 84633 78.21 388476 33 302453 83449 78.38 385902 34 304361 85238 78.12 389599 35 301049 84023 78.18 385072 36 298889 82963 78.27 381852 37 299118 83499 78.18 382617 38 298224 83556 78.11 381780 39 297517 82218 78.35 379735 40 299332 82971 78.30 382303 41 292482 82118 78.08 374600 42 287601 80015 78.23 367616 43 288716 80145 78.27 368861 44 287063 80009 78.20 367072 45 282896 79089 78.15 361985 46 282124 80544 77.79 362668 47 281157 79692 77.92 360849 48 275806 78638 77.81 354444 49 273991 79211 77.57 353202 50 269956 77708 77.65 347664 51 265223 76179 77.69 341402 52 263761 76615 77.49 340376 53 259719 75556 77.46 335275 54 258153 75375 77.40 333528 55 257174 75551 77.29 332725 56 253807 75076 77.17 328883 57 250854 73943 77.23 324797 58 245986 73824 76.92 319810 59 243929 73121 76.94 317050 60 238165 72034 76.78 310199 61 236524 72476 76.54 309000 62 231367 70590 76.62 301957 63 225998 69389 76.51 295387 64 224119 69066 76.44 293185 65 218825 68541 76.15 287366 66 214565 66590 76.32 281155 67 212735 66504 76.18 279239 68 208749 66054 75.96 274803 69 204271 64145 76.10 268416 70 202085 65381 75.56 267466 71 198593 63797 75.69 262390 72 193115 62808 75.46 255923 73 188478 62505 75.10 250983 74 185047 61855 74.95 246902 75 178123 60564 74.63 238687 76 172842 59637 74.35 232479 77 164309 58234 73.83 222543 78 149349 53371 73.67 202720 79 117138 42803 73.24 159941 80 50481 18494 73.19 68975 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 61379 551573 10.01 612952 2 35682 554358 6.05 590040 3 29410 557805 5.01 587215 4 22683 549388 3.97 572071 5 25423 545705 4.45 571128 6 26955 543988 4.72 570943 7 20863 551483 3.65 572346 8 21496 562529 3.68 584025 9 20614 557165 3.57 577779 10 20576 554410 3.58 574986 11 19858 548376 3.49 568234 12 19014 563034 3.27 582048 13 18935 554087 3.30 573022 14 18537 553847 3.24 572384 15 18177 575142 3.06 593319 16 17667 576241 2.97 593908 17 17984 572328 3.05 590312 18 17659 590011 2.91 607670 19 17076 581843 2.85 598919 20 17180 578607 2.88 595787 21 17386 590695 2.86 608081 22 16981 579100 2.85 596081 23 16594 585363 2.76 601957 24 16531 597321 2.69 613852 25 16101 593735 2.64 609836 26 16414 588803 2.71 605217 27 16002 603673 2.58 619675 28 15696 597162 2.56 612858 29 15967 603396 2.58 619363 30 15222 597887 2.48 613109 31 15154 599566 2.47 614720 32 15033 597121 2.46 612154 33 15101 606120 2.43 621221 34 14616 593630 2.40 608246 35 14844 592797 2.44 607641 36 14700 595031 2.41 609731 37 14444 586639 2.40 601083 38 14384 582656 2.41 597040 39 13815 591204 2.28 605019 40 13609 580947 2.29 594556 41 13957 576603 2.36 590560 42 13309 580298 2.24 593607 43 13363 571627 2.28 584990 44 13497 560737 2.35 574234 45 13192 567620 2.27 580812 46 12942 556554 2.27 569496 47 13154 552715 2.32 565869 48 12854 549610 2.29 562464 49 12571 540290 2.27 552861 50 13873 528386 2.56 542259 51 12676 534406 2.32 547082 52 12674 522891 2.37 535565 53 12378 515952 2.34 528330 54 11710 516007 2.22 527717 55 11736 507885 2.26 519621 56 11725 500411 2.29 512136 57 11540 504176 2.24 515716 58 11232 489957 2.24 501189 59 11361 483535 2.30 494896 60 11148 482174 2.26 493322 61 11051 469152 2.30 480203 62 11110 463409 2.34 474519 63 10900 461050 2.31 471950 64 10582 448167 2.31 458749 65 10617 441387 2.35 452004 66 10529 437271 2.35 447800 67 10238 429197 2.33 439435 68 10239 419383 2.38 429622 69 10078 415901 2.37 425979 70 9856 407271 2.36 417127 71 10023 400178 2.44 410201 72 9758 395247 2.41 405005 73 9697 386308 2.45 396005 74 9643 380348 2.47 389991 75 9507 376173 2.46 385680 76 9523 361074 2.57 370597 77 9473 341746 2.70 351219 78 8976 314884 2.77 323860 79 7101 245602 2.81 252703 80 3152 105443 2.90 108595 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 161357 1685332 8.74 1846689 2 149659 1677771 8.19 1827430 3 129396 1697211 7.08 1826607 4 116699 1675397 6.51 1792096 5 118282 1666811 6.63 1785093 6 119833 1578321 7.06 1698154 7 105151 1589730 6.20 1694881 8 102899 1563297 6.18 1666196 9 107129 1582732 6.34 1689861 10 106736 1609831 6.22 1716567 11 102935 1573465 6.14 1676400 12 102784 1583361 6.10 1686145 13 103491 1619340 6.01 1722831 14 99811 1617440 5.81 1717251 15 100974 1645478 5.78 1746452 16 99886 1671107 5.64 1770993 17 97441 1654246 5.56 1751687 18 97882 1668216 5.54 1766098 19 98522 1686215 5.52 1784737 20 95625 1670103 5.42 1765728 21 97111 1677007 5.47 1774118 22 95400 1681801 5.37 1777201 23 90946 1687467 5.11 1778413 24 91082 1699713 5.09 1790795 25 90702 1714291 5.03 1804993 26 86705 1703337 4.84 1790042 27 87966 1703433 4.91 1791399 28 85933 1717227 4.77 1803160 29 84227 1693915 4.74 1778142 30 83003 1698146 4.66 1781149 31 82485 1733934 4.54 1816419 32 78889 1693552 4.45 1772441 33 77668 1691948 4.39 1769616 34 76236 1703469 4.28 1779705 35 74401 1689581 4.22 1763982 36 73214 1685076 4.16 1758290 37 72089 1689761 4.09 1761850 38 69397 1669662 3.99 1739059 39 68980 1665750 3.98 1734730 40 67322 1672121 3.87 1739443 41 65248 1654418 3.79 1719666 42 64215 1634752 3.78 1698967 43 61859 1638945 3.64 1700804 44 60580 1610510 3.63 1671090 45 58800 1594678 3.56 1653478 46 57655 1599631 3.48 1657286 47 56238 1577919 3.44 1634157 48 54974 1570800 3.38 1625774 49 53795 1569393 3.31 1623188 50 55530 1512138 3.54 1567668 51 51151 1506957 3.28 1558108 52 50708 1508901 3.25 1559609 53 47947 1464622 3.17 1512569 54 46443 1449074 3.11 1495517 55 45881 1441546 3.08 1487427 56 44212 1421246 3.02 1465458 57 43522 1413438 2.99 1456960 58 42027 1392915 2.93 1434942 59 41342 1381726 2.91 1423068 60 40553 1354521 2.91 1395074 61 39759 1334936 2.89 1374695 62 38436 1314488 2.84 1352924 63 37770 1298974 2.83 1336744 64 36845 1296048 2.76 1332893 65 35979 1262760 2.77 1298739 66 35102 1239621 2.75 1274723 67 34993 1231423 2.76 1266416 68 34268 1222903 2.73 1257171 69 34341 1199235 2.78 1233576 70 32794 1176723 2.71 1209517 71 32615 1153095 2.75 1185710 72 32393 1138446 2.77 1170839 73 32010 1109665 2.80 1141675 74 31480 1084142 2.82 1115622 75 31869 1061692 2.91 1093561 76 31576 1035175 2.96 1066751 77 30461 984484 3.00 1014945 78 28486 900984 3.06 929470 79 22717 712448 3.09 735165 80 9158 296894 2.99 306052 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 181573 88119 67.33 269692 2 167969 70273 70.50 238242 3 152674 65183 70.08 217857 4 131793 58952 69.09 190745 5 129870 56794 69.57 186664 6 127436 51987 71.03 179423 7 130815 58966 68.93 189781 8 125742 49606 71.71 175348 9 123599 47468 72.25 171067 10 126297 47922 72.49 174219 11 125765 47391 72.63 173156 12 121191 45210 72.83 166401 13 121142 43391 73.63 164533 14 118318 43472 73.13 161790 15 119029 42114 73.87 161143 16 116153 40894 73.96 157047 17 113386 40698 73.59 154084 18 109239 38369 74.01 147608 19 108210 37364 74.33 145574 20 106136 37134 74.08 143270 21 104066 35506 74.56 139572 22 101999 34423 74.77 136422 23 100076 34285 74.48 134361 24 99381 32716 75.23 132097 25 98360 32637 75.09 130997 26 95127 31930 74.87 127057 27 92506 30530 75.19 123036 28 92681 29878 75.62 122559 29 89738 29063 75.54 118801 30 87485 27648 75.99 115133 31 88360 28126 75.85 116486 32 85945 27093 76.03 113038 33 84593 26332 76.26 110925 34 84070 26116 76.30 110186 35 80844 24963 76.41 105807 36 78378 24158 76.44 102536 37 77432 23420 76.78 100852 38 75779 23127 76.62 98906 39 74877 22164 77.16 97041 40 74471 22366 76.90 96837 41 70912 21240 76.95 92152 42 68570 20269 77.18 88839 43 67464 19706 77.39 87170 44 65981 19611 77.09 85592 45 64644 18754 77.51 83398 46 63020 18585 77.23 81605 47 62000 18521 77.00 80521 48 59690 17424 77.40 77114 49 58139 17373 76.99 75512 50 57295 16720 77.41 74015 51 54743 16254 77.11 70997 52 52653 15702 77.03 68355 53 51951 15421 77.11 67372 54 50774 15186 76.98 65960 55 50356 14974 77.08 65330 56 48499 14751 76.68 63250 57 48256 14511 76.88 62767 58 45632 14341 76.09 59973 59 44616 13552 76.70 58168 60 42880 13249 76.40 56129 61 42057 12867 76.57 54924 62 40590 12705 76.16 53295 63 39902 12278 76.47 52180 64 38390 11863 76.39 50253 65 36704 11584 76.01 48288 66 35815 11348 75.94 47163 67 35192 11008 76.17 46200 68 33732 10905 75.57 44637 69 32995 10614 75.66 43609 70 32377 10633 75.28 43010 71 31173 10355 75.07 41528 72 29821 10150 74.61 39971 73 29234 9635 75.21 38869 74 27975 9703 74.25 37678 75 26677 9065 74.64 35742 76 25701 8822 74.45 34523 77 24187 8607 73.75 32794 78 22412 7888 73.97 30300 79 19408 7027 73.42 26435 80 13026 4889 72.71 17915 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 45296 410673 9.93 455969 2 20911 348515 5.66 369426 3 19586 331025 5.59 350611 4 13118 311445 4.04 324563 5 14791 290517 4.84 305308 6 17045 281245 5.71 298290 7 11153 279897 3.83 291050 8 11735 286231 3.94 297966 9 10306 267840 3.71 278146 10 10304 260990 3.80 271294 11 9986 257752 3.73 267738 12 9066 259536 3.38 268602 13 8983 249451 3.48 258434 14 8269 244161 3.28 252430 15 8319 248469 3.24 256788 16 8021 242217 3.21 250238 17 7789 233346 3.23 241135 18 7564 233545 3.14 241109 19 7169 224248 3.10 231417 20 6722 219747 2.97 226469 21 6552 219683 2.90 226235 22 6425 210344 2.96 216769 23 6159 209913 2.85 216072 24 6065 207975 2.83 214040 25 5708 200714 2.77 206422 26 5530 195451 2.75 200981 27 5292 198501 2.60 203793 28 5115 190501 2.61 195616 29 5227 191769 2.65 196996 30 4600 183900 2.44 188500 31 4527 181738 2.43 186265 32 4379 178267 2.40 182646 33 4270 177836 2.34 182106 34 3996 168146 2.32 172142 35 4078 166904 2.39 170982 36 3843 164233 2.29 168076 37 3719 157088 2.31 160807 38 3701 156101 2.32 159802 39 3472 154792 2.19 158264 40 3398 148866 2.23 152264 41 3326 147418 2.21 150744 42 3141 144267 2.13 147408 43 3004 139162 2.11 142166 44 2936 134353 2.14 137289 45 2939 134363 2.14 137302 46 2865 129161 2.17 132026 47 2801 127005 2.16 129806 48 2647 122495 2.12 125142 49 2575 119260 2.11 121835 50 2517 115820 2.13 118337 51 2494 115033 2.12 117527 52 2312 110333 2.05 112645 53 2349 106201 2.16 108550 54 2262 105633 2.10 107895 55 2213 102296 2.12 104509 56 2152 99991 2.11 102143 57 2254 99682 2.21 101936 58 1982 94569 2.05 96551 59 1989 92509 2.10 94498 60 1917 90735 2.07 92652 61 1834 86786 2.07 88620 62 1787 85057 2.06 86844 63 1825 83303 2.14 85128 64 1751 80045 2.14 81796 65 1631 78046 2.05 79677 66 1639 76685 2.09 78324 67 1526 73341 2.04 74867 68 1616 72093 2.19 73709 69 1634 69351 2.30 70985 70 1472 68206 2.11 69678 71 1421 65920 2.11 67341 72 1371 64211 2.09 65582 73 1372 61965 2.17 63337 74 1386 59633 2.27 61019 75 1308 59188 2.16 60496 76 1249 55803 2.19 57052 77 1196 53006 2.21 54202 78 1064 49280 2.11 50344 79 965 42462 2.22 43427 80 688 28195 2.38 28883 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 111207 1302786 7.86 1413993 2 83914 1065116 7.30 1149030 3 61033 1012608 5.68 1073641 4 50824 952349 5.07 1003173 5 51859 910244 5.39 962103 6 55768 836789 6.25 892557 7 40132 829591 4.61 869723 8 40115 799836 4.78 839951 9 40616 802789 4.82 843405 10 38475 797622 4.60 836097 11 36239 757271 4.57 793510 12 33992 748261 4.35 782253 13 33224 749870 4.24 783094 14 31403 731536 4.12 762939 15 30309 732378 3.97 762687 16 29452 725941 3.90 755393 17 27412 703777 3.75 731189 18 26270 694655 3.64 720925 19 25638 684552 3.61 710190 20 24204 664362 3.52 688566 21 23790 656316 3.50 680106 22 22641 637934 3.43 660575 23 21678 628798 3.33 650476 24 20975 617708 3.28 638683 25 20687 610451 3.28 631138 26 19139 595910 3.11 615049 27 18849 584359 3.12 603208 28 18182 580325 3.04 598507 29 17307 561249 2.99 578556 30 16812 552055 2.96 568867 31 16695 557900 2.91 574595 32 15327 529670 2.81 544997 33 14867 520348 2.78 535215 34 14484 514466 2.74 528950 35 14076 503572 2.72 517648 36 13345 494343 2.63 507688 37 12851 486749 2.57 499600 38 12178 473402 2.51 485580 39 11770 464417 2.47 476187 40 11597 458565 2.47 470162 41 10999 445472 2.41 456471 42 10603 432738 2.39 443341 43 10378 426198 2.38 436576 44 9823 410898 2.33 420721 45 9624 399307 2.35 408931 46 9612 397051 2.36 406663 47 9221 386171 2.33 395392 48 8912 382378 2.28 391290 49 8964 375919 2.33 384883 50 8486 354206 2.34 362692 51 8151 346496 2.30 354647 52 8235 347473 2.32 355708 53 7910 326228 2.37 334138 54 7444 317042 2.29 324486 55 7628 310763 2.40 318391 56 7318 303561 2.35 310879 57 7291 300504 2.37 307795 58 6845 289201 2.31 296046 59 6536 285699 2.24 292235 60 6584 274892 2.34 281476 61 6327 266019 2.32 272346 62 6094 258790 2.30 264884 63 5944 252930 2.30 258874 64 6012 252963 2.32 258975 65 5735 240461 2.33 246196 66 5696 232497 2.39 238193 67 5453 229185 2.32 234638 68 5444 228334 2.33 233778 69 5562 220085 2.46 225647 70 5066 211110 2.34 216176 71 4953 205616 2.35 210569 72 4831 202412 2.33 207243 73 4676 192861 2.37 197537 74 4769 185464 2.51 190233 75 4504 179983 2.44 184487 76 4565 174371 2.55 178936 77 4135 165936 2.43 170071 78 3879 155389 2.44 159268 79 3288 136561 2.35 139849 80 2267 91040 2.43 93307