CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 178526 111745 61.50 290271 2 198501 106250 65.14 304751 3 185163 103942 64.05 289105 4 174226 99328 63.69 273554 5 176349 99561 63.92 275910 6 176022 96588 64.57 272610 7 184468 103993 63.95 288461 8 181381 97121 65.13 278502 9 182084 95135 65.68 277219 10 187788 97117 65.91 284905 11 190983 98195 66.04 289178 12 190411 96114 66.46 286525 13 191803 95617 66.73 287420 14 191628 96818 66.43 288446 15 192952 94968 67.02 287920 16 194454 94792 67.23 289246 17 194133 96485 66.80 290618 18 195069 94434 67.38 289503 19 196358 95384 67.31 291742 20 197194 95117 67.46 292311 21 198460 95129 67.60 293589 22 198039 95855 67.38 293894 23 198184 95472 67.49 293656 24 198115 94808 67.63 292923 25 201741 95810 67.80 297551 26 200401 96334 67.54 296735 27 199187 93976 67.94 293163 28 201239 95207 67.88 296446 29 200196 94971 67.82 295167 30 199280 93896 67.97 293176 31 202281 95101 68.02 297382 32 201839 94544 68.10 296383 33 200701 93145 68.30 293846 34 203838 94902 68.23 298740 35 200844 93915 68.14 294759 36 198819 91575 68.47 290394 37 200035 93130 68.23 293165 38 199838 92645 68.32 292483 39 198007 91311 68.44 289318 40 199346 92608 68.28 291954 41 195217 90791 68.26 286008 42 193027 89251 68.38 282278 43 192088 88880 68.37 280968 44 191145 89781 68.04 280926 45 188337 88385 68.06 276722 46 188915 88581 68.08 277496 47 187468 88564 67.92 276032 48 183960 87001 67.89 270961 49 182878 86940 67.78 269818 50 179982 86801 67.46 266783 51 176573 84197 67.71 260770 52 175953 83708 67.76 259661 53 174070 83699 67.53 257769 54 172224 82354 67.65 254578 55 172436 82039 67.76 254475 56 170192 81713 67.56 251905 57 167997 80923 67.49 248920 58 165369 79624 67.50 244993 59 161481 79144 67.11 240625 60 159214 77846 67.16 237060 61 157970 77475 67.09 235445 62 154267 76116 66.96 230383 63 151569 74261 67.12 225830 64 149875 74552 66.78 224427 65 147950 73440 66.83 221390 66 144763 71643 66.89 216406 67 142894 71746 66.57 214640 68 141107 70519 66.68 211626 69 137211 68892 66.57 206103 70 135749 69005 66.30 204754 71 133484 67934 66.27 201418 72 130720 67157 66.06 197877 73 128344 66267 65.95 194611 74 125401 66228 65.44 191629 75 121730 63263 65.80 184993 76 118332 62671 65.38 181003 77 114039 60216 65.44 174255 78 104209 56534 64.83 160743 79 84068 46127 64.57 130195 80 39411 21749 64.44 61160 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 47684 477786 9.07 525470 2 29722 492393 5.69 522115 3 24699 493164 4.77 517863 4 18964 484324 3.77 503288 5 20538 473186 4.16 493724 6 22213 478270 4.44 500483 7 16887 481163 3.39 498050 8 17241 496859 3.35 514100 9 16306 483610 3.26 499916 10 15863 483426 3.18 499289 11 15617 484810 3.12 500427 12 15604 492270 3.07 507874 13 15726 485353 3.14 501079 14 14770 489313 2.93 504083 15 14783 504786 2.85 519569 16 14596 500163 2.84 514759 17 14037 497690 2.74 511727 18 14263 509958 2.72 524221 19 14005 504231 2.70 518236 20 13842 504486 2.67 518328 21 13984 512039 2.66 526023 22 13718 506122 2.64 519840 23 13692 511268 2.61 524960 24 14157 517751 2.66 531908 25 13262 511636 2.53 524898 26 13479 511938 2.57 525417 27 13348 522870 2.49 536218 28 12814 516850 2.42 529664 29 13133 521480 2.46 534613 30 12495 517142 2.36 529637 31 12780 520492 2.40 533272 32 12504 518575 2.35 531079 33 12845 523049 2.40 535894 34 12682 511185 2.42 523867 35 12687 513830 2.41 526517 36 12285 514517 2.33 526802 37 12068 505329 2.33 517397 38 12209 504515 2.36 516724 39 11913 511341 2.28 523254 40 11613 503818 2.25 515431 41 11702 502217 2.28 513919 42 11760 502062 2.29 513822 43 11072 495789 2.18 506861 44 10981 486867 2.21 497848 45 11172 491675 2.22 502847 46 10997 481895 2.23 492892 47 11306 479364 2.30 490670 48 10982 476288 2.25 487270 49 10625 469033 2.22 479658 50 10761 463312 2.27 474073 51 11011 464545 2.32 475556 52 10143 454685 2.18 464828 53 10509 450327 2.28 460836 54 9788 448504 2.14 458292 55 9966 441550 2.21 451516 56 9800 437752 2.19 447552 57 9550 438498 2.13 448048 58 9498 425677 2.18 435175 59 9862 420285 2.29 430147 60 9196 419503 2.15 428699 61 9069 408360 2.17 417429 62 9195 402527 2.23 411722 63 8780 400652 2.14 409432 64 8734 389992 2.19 398726 65 8639 385659 2.19 394298 66 8505 380106 2.19 388611 67 8364 373082 2.19 381446 68 8254 367077 2.20 375331 69 8246 362792 2.22 371038 70 7998 354307 2.21 362305 71 8217 349097 2.30 357314 72 7766 345436 2.20 353202 73 7943 338290 2.29 346233 74 7724 332258 2.27 339982 75 8203 328303 2.44 336506 76 7879 317652 2.42 325531 77 7624 303938 2.45 311562 78 7294 283883 2.51 291177 79 6020 228390 2.57 234410 80 2796 106050 2.57 108846 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 157871 1537837 9.31 1695708 2 146658 1543181 8.68 1689839 3 131201 1559126 7.76 1690327 4 120469 1545887 7.23 1666356 5 118809 1512602 7.28 1631411 6 120898 1453812 7.68 1574710 7 111123 1452207 7.11 1563330 8 105496 1440251 6.82 1545747 9 111621 1460491 7.10 1572112 10 109875 1477897 6.92 1587772 11 106382 1448853 6.84 1555235 12 107593 1457741 6.87 1565334 13 110954 1475068 7.00 1586022 14 103468 1481620 6.53 1585088 15 107151 1502759 6.66 1609910 16 107910 1518161 6.64 1626071 17 103393 1513005 6.40 1616398 18 104514 1527024 6.41 1631538 19 106623 1538079 6.48 1644702 20 102325 1530129 6.27 1632454 21 104184 1539507 6.34 1643691 22 102842 1534549 6.28 1637391 23 98127 1537569 6.00 1635696 24 100234 1538852 6.12 1639086 25 98416 1553985 5.96 1652401 26 95174 1544879 5.80 1640053 27 97082 1551061 5.89 1648143 28 95205 1555676 5.77 1650881 29 92874 1542231 5.68 1635105 30 92447 1542243 5.66 1634690 31 91959 1571823 5.53 1663782 32 87206 1541257 5.36 1628463 33 88376 1532916 5.45 1621292 34 87378 1544062 5.36 1631440 35 83356 1542257 5.13 1625613 36 82896 1533983 5.13 1616879 37 82955 1537426 5.12 1620381 38 78389 1521988 4.90 1600377 39 78379 1523075 4.89 1601454 40 76479 1524839 4.78 1601318 41 74530 1511210 4.70 1585740 42 72661 1496619 4.63 1569280 43 70922 1492930 4.54 1563852 44 68223 1469119 4.44 1537342 45 66603 1451436 4.39 1518039 46 65297 1456590 4.29 1521887 47 63495 1439197 4.23 1502692 48 61712 1438964 4.11 1500676 49 60920 1431153 4.08 1492073 50 57174 1387923 3.96 1445097 51 57427 1369527 4.02 1426954 52 54517 1378559 3.80 1433076 53 52400 1338668 3.77 1391068 54 50761 1323140 3.69 1373901 55 49989 1314398 3.66 1364387 56 46846 1295488 3.49 1342334 57 47193 1292641 3.52 1339834 58 45196 1268303 3.44 1313499 59 44720 1257622 3.43 1302342 60 42420 1239131 3.31 1281551 61 41359 1216910 3.29 1258269 62 40051 1197165 3.24 1237216 63 39148 1188850 3.19 1227998 64 38253 1186230 3.12 1224483 65 36552 1153065 3.07 1189617 66 36021 1136035 3.07 1172056 67 35675 1124856 3.07 1160531 68 34200 1118774 2.97 1152974 69 34062 1097713 3.01 1131775 70 33102 1074484 2.99 1107586 71 33185 1054072 3.05 1087257 72 32067 1042900 2.98 1074967 73 31690 1016236 3.02 1047926 74 30643 993736 2.99 1024379 75 32120 971951 3.20 1004071 76 31280 954550 3.17 985830 77 29434 915036 3.12 944470 78 27690 854092 3.14 881782 79 22474 695113 3.13 717587 80 9596 313554 2.97 323150 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 121314 83695 59.17 205009 2 119438 68645 63.50 188083 3 108268 63872 62.90 172140 4 90904 58867 60.70 149771 5 89729 56858 61.21 146587 6 88332 53989 62.07 142321 7 91099 59051 60.67 150150 8 88289 52368 62.77 140657 9 86462 49843 63.43 136305 10 87832 50539 63.48 138371 11 87804 50394 63.53 138198 12 84651 48676 63.49 133327 13 84183 46581 64.38 130764 14 83495 46418 64.27 129913 15 83046 45133 64.79 128179 16 80730 43955 64.75 124685 17 78879 43615 64.39 122494 18 76545 41352 64.93 117897 19 74950 40913 64.69 115863 20 73388 40112 64.66 113500 21 72366 39056 64.95 111422 22 71697 37697 65.54 109394 23 69736 37273 65.17 107009 24 68794 35916 65.70 104710 25 68956 35639 65.93 104595 26 66378 35273 65.30 101651 27 64464 33459 65.83 97923 28 64390 33301 65.91 97691 29 62653 32572 65.79 95225 30 61128 31179 66.22 92307 31 60697 31127 66.10 91824 32 60048 30297 66.47 90345 33 58802 29466 66.62 88268 34 59255 29293 66.92 88548 35 56479 28563 66.41 85042 36 55266 27198 67.02 82464 37 54223 26886 66.85 81109 38 53080 26359 66.82 79439 39 51951 25760 66.85 77711 40 51659 25546 66.91 77205 41 49588 24654 66.79 74242 42 48399 23780 67.05 72179 43 47143 23163 67.05 70306 44 45993 22818 66.84 68811 45 45086 22212 66.99 67298 46 44354 21588 67.26 65942 47 43111 21629 66.59 64740 48 41701 20993 66.52 62694 49 40923 20449 66.68 61372 50 39987 19934 66.73 59921 51 38468 19032 66.90 57500 52 38005 18825 66.87 56830 53 36867 18453 66.64 55320 54 35808 17948 66.61 53756 55 35607 17979 66.45 53586 56 34680 17378 66.62 52058 57 34399 17250 66.60 51649 58 32948 16400 66.77 49348 59 31842 16154 66.34 47996 60 30936 15553 66.54 46489 61 30643 15473 66.45 46116 62 29036 15119 65.76 44155 63 28491 14631 66.07 43122 64 28105 14237 66.38 42342 65 27377 13981 66.20 41358 66 26496 13785 65.78 40281 67 25810 13582 65.52 39392 68 24837 12909 65.80 37746 69 24251 12817 65.42 37068 70 23818 12660 65.29 36478 71 23317 12293 65.48 35610 72 22476 12121 64.97 34597 73 21878 11749 65.06 33627 74 21323 11644 64.68 32967 75 20484 10901 65.27 31385 76 19854 10661 65.06 30515 77 18763 10478 64.17 29241 78 17409 9775 64.04 27184 79 15031 8500 63.88 23531 80 9868 6062 61.95 15930 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 39087 351392 10.01 390479 2 18609 306708 5.72 325317 3 17586 291195 5.70 308781 4 11114 277515 3.85 288629 5 12512 256164 4.66 268676 6 15191 251532 5.70 266723 7 9301 250638 3.58 259939 8 9804 258271 3.66 268075 9 8610 239959 3.46 248569 10 8284 235010 3.40 243294 11 8124 232988 3.37 241112 12 7341 233787 3.04 241128 13 7397 226467 3.16 233864 14 6924 221803 3.03 228727 15 6728 224266 2.91 230994 16 6494 217889 2.89 224383 17 6132 209896 2.84 216028 18 5956 208724 2.77 214680 19 5653 201556 2.73 207209 20 5324 197734 2.62 203058 21 5487 196058 2.72 201545 22 5149 189459 2.65 194608 23 4916 189631 2.53 194547 24 4822 186955 2.51 191777 25 4684 180421 2.53 185105 26 4418 176836 2.44 181254 27 4356 178416 2.38 182772 28 4099 171730 2.33 175829 29 4044 171011 2.31 175055 30 3806 165508 2.25 169314 31 3794 163250 2.27 167044 32 3550 159960 2.17 163510 33 3527 159168 2.17 162695 34 3250 152624 2.09 155874 35 3207 150434 2.09 153641 36 2991 147317 1.99 150308 37 3008 142211 2.07 145219 38 2965 140858 2.06 143823 39 2804 139878 1.97 142682 40 2709 135547 1.96 138256 41 2685 133560 1.97 136245 42 2537 131058 1.90 133595 43 2419 126551 1.88 128970 44 2294 122690 1.84 124984 45 2378 121844 1.91 124222 46 2178 117786 1.82 119964 47 2254 116717 1.89 118971 48 2275 112352 1.98 114627 49 2190 109049 1.97 111239 50 2032 106266 1.88 108298 51 1988 105247 1.85 107235 52 1955 102045 1.88 104000 53 1964 99476 1.94 101440 54 1880 97174 1.90 99054 55 1803 94891 1.86 96694 56 1799 92086 1.92 93885 57 1884 92592 1.99 94476 58 1691 88493 1.88 90184 59 1744 86088 1.99 87832 60 1639 84995 1.89 86634 61 1617 81393 1.95 83010 62 1496 79562 1.85 81058 63 1524 78697 1.90 80221 64 1441 76085 1.86 77526 65 1447 74016 1.92 75463 66 1454 72361 1.97 73815 67 1313 70307 1.83 71620 68 1364 69267 1.93 70631 69 1286 67102 1.88 68388 70 1312 65253 1.97 66565 71 1339 63351 2.07 64690 72 1252 61654 1.99 62906 73 1232 60630 1.99 61862 74 1189 58608 1.99 59797 75 1112 57883 1.88 58995 76 1093 55215 1.94 56308 77 1072 52698 1.99 53770 78 1004 49089 2.00 50093 79 938 42529 2.16 43467 80 598 28210 2.08 28808 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 107962 1158181 8.53 1266143 2 81961 965565 7.82 1047526 3 58047 917637 5.95 975684 4 47421 871024 5.16 918445 5 47949 834342 5.43 882291 6 53873 774419 6.50 828292 7 38909 761407 4.86 800316 8 37721 742334 4.84 780055 9 38875 742560 4.97 781435 10 36432 737198 4.71 773630 11 33992 705050 4.60 739042 12 31575 696936 4.33 728511 13 31401 696033 4.32 727434 14 28784 683799 4.04 712583 15 28963 682433 4.07 711396 16 27458 675212 3.91 702670 17 25727 658646 3.76 684373 18 25072 646115 3.74 671187 19 23959 631438 3.66 655397 20 22321 617284 3.49 639605 21 21946 609992 3.47 631938 22 21247 591854 3.47 613101 23 20365 586522 3.36 606887 24 19921 574811 3.35 594732 25 19071 568273 3.25 587344 26 18108 555212 3.16 573320 27 18402 545154 3.27 563556 28 17104 538547 3.08 555651 29 16323 525588 3.01 541911 30 15800 516401 2.97 532201 31 16323 517790 3.06 534113 32 14547 497288 2.84 511835 33 14440 486071 2.89 500511 34 13697 483385 2.76 497082 35 13421 473861 2.75 487282 36 12825 463835 2.69 476660 37 12789 458060 2.72 470849 38 11792 445657 2.58 457449 39 11372 437709 2.53 449081 40 11226 432633 2.53 443859 41 10544 422540 2.43 433084 42 10286 411394 2.44 421680 43 10199 404927 2.46 415126 44 9709 391232 2.42 400941 45 9679 380659 2.48 390338 46 9382 379145 2.41 388527 47 8998 368644 2.38 377642 48 9085 365682 2.42 374767 49 8972 359386 2.44 368358 50 8210 342316 2.34 350526 51 8162 332825 2.39 340987 52 8105 333250 2.37 341355 53 7903 315641 2.44 323544 54 7762 307365 2.46 315127 55 7761 303508 2.49 311269 56 7393 296594 2.43 303987 57 7817 292204 2.61 300021 58 7177 282856 2.47 290033 59 6963 281167 2.42 288130 60 6767 271437 2.43 278204 61 6979 261349 2.60 268328 62 6262 257459 2.37 263721 63 6375 252813 2.46 259188 64 6234 250799 2.43 257033 65 6017 239706 2.45 245723 66 5804 233075 2.43 238879 67 5715 229538 2.43 235253 68 5745 228514 2.45 234259 69 5762 221986 2.53 227748 70 5435 213973 2.48 219408 71 5484 208647 2.56 214131 72 5311 205874 2.51 211185 73 5153 197141 2.55 202294 74 4786 191492 2.44 196278 75 4891 185746 2.57 190637 76 4587 181324 2.47 185911 77 4451 173884 2.50 178335 78 4155 163311 2.48 167466 79 3713 144507 2.51 148220 80 2258 97197 2.27 99455