CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 221424 115316 65.76 336740 2 248810 108523 69.63 357333 3 231128 106702 68.42 337830 4 217305 100965 68.28 318270 5 218938 99490 68.76 318428 6 221258 97096 69.50 318354 7 229957 105171 68.62 335128 8 226443 97271 69.95 323714 9 226253 94675 70.50 320928 10 235637 96813 70.88 332450 11 239141 98448 70.84 337589 12 237608 95650 71.30 333258 13 240217 94242 71.82 334459 14 240324 96209 71.41 336533 15 242269 94455 71.95 336724 16 243340 94765 71.97 338105 17 243804 95688 71.81 339492 18 242998 93544 72.20 336542 19 245693 93431 72.45 339124 20 245983 94022 72.35 340005 21 247877 93272 72.66 341149 22 247442 93151 72.65 340593 23 249942 93060 72.87 343002 24 249135 92360 72.95 341495 25 251977 94162 72.80 346139 26 251061 93876 72.78 344937 27 249334 92233 73.00 341567 28 252448 92670 73.15 345118 29 252071 92306 73.20 344377 30 250591 90882 73.39 341473 31 255155 93508 73.18 348663 32 253654 92219 73.34 345873 33 252806 90741 73.59 343547 34 256078 91939 73.58 348017 35 254348 91124 73.62 345472 36 250483 89158 73.75 339641 37 251797 90783 73.50 342580 38 252622 91097 73.50 343719 39 251903 89567 73.77 341470 40 252452 90224 73.67 342676 41 248161 89006 73.60 337167 42 244414 87054 73.74 331468 43 244995 86968 73.80 331963 44 243778 87686 73.55 331464 45 240117 86072 73.61 326189 46 240933 86802 73.51 327735 47 239212 87331 73.26 326543 48 235062 85544 73.32 320606 49 234568 85410 73.31 319978 50 232201 85818 73.01 318019 51 227155 83370 73.15 310525 52 226824 83009 73.21 309833 53 223819 82755 73.01 306574 54 222952 81254 73.29 304206 55 222651 81900 73.11 304551 56 219385 82232 72.74 301617 57 218002 80474 73.04 298476 58 213223 79762 72.78 292985 59 209654 79591 72.48 289245 60 206574 77439 72.73 284013 61 205337 78106 72.44 283443 62 200889 76212 72.50 277101 63 197277 75131 72.42 272408 64 196023 74583 72.44 270606 65 192536 74016 72.23 266552 66 188432 72960 72.09 261392 67 186871 71849 72.23 258720 68 183849 72006 71.86 255855 69 180428 70242 71.98 250670 70 178629 70207 71.79 248836 71 175282 69064 71.74 244346 72 171777 68497 71.49 240274 73 168545 67566 71.38 236111 74 164146 67126 70.98 231272 75 159851 65160 71.04 225011 76 155886 64060 70.87 219946 77 149428 62907 70.37 212335 78 136775 58850 69.92 195625 79 110300 47435 69.93 157735 80 49758 21781 69.55 71539 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 54151 535323 9.19 589474 2 32055 551764 5.49 583819 3 27991 553652 4.81 581643 4 20671 546585 3.64 567256 5 22319 530543 4.04 552862 6 24753 537243 4.40 561996 7 18811 541843 3.36 560654 8 19366 554980 3.37 574346 9 17774 539924 3.19 557698 10 17619 540760 3.16 558379 11 17201 542772 3.07 559973 12 16703 553130 2.93 569833 13 16998 543836 3.03 560834 14 16283 545673 2.90 561956 15 15891 563591 2.74 579482 16 15785 559394 2.74 575179 17 15618 556016 2.73 571634 18 15481 570584 2.64 586065 19 15270 563608 2.64 578878 20 14813 562801 2.56 577614 21 15019 572840 2.55 587859 22 14645 568251 2.51 582896 23 14726 572726 2.51 587452 24 15204 578928 2.56 594132 25 14390 574432 2.44 588822 26 14599 570821 2.49 585420 27 14314 586265 2.38 600579 28 14112 580150 2.37 594262 29 14245 584321 2.38 598566 30 13634 580448 2.29 594082 31 13713 584648 2.29 598361 32 13628 582422 2.29 596050 33 14085 587211 2.34 601296 34 14020 576353 2.37 590373 35 13490 576904 2.28 590394 36 13107 579072 2.21 592179 37 13227 568318 2.27 581545 38 13194 568407 2.27 581601 39 12823 576481 2.18 589304 40 12708 568778 2.19 581486 41 12483 565907 2.16 578390 42 12256 565474 2.12 577730 43 12171 558357 2.13 570528 44 12291 551170 2.18 563461 45 12129 555905 2.14 568034 46 12043 545382 2.16 557425 47 12496 543635 2.25 556131 48 12168 540611 2.20 552779 49 11692 531959 2.15 543651 50 11886 524747 2.21 536633 51 12294 526727 2.28 539021 52 11370 516776 2.15 528146 53 11294 512120 2.16 523414 54 11118 510651 2.13 521769 55 11065 504948 2.14 516013 56 10953 499250 2.15 510203 57 10799 499855 2.11 510654 58 10922 487694 2.19 498616 59 11142 480010 2.27 491152 60 10741 481970 2.18 492711 61 10356 468223 2.16 478579 62 10647 461096 2.26 471743 63 10279 460449 2.18 470728 64 10115 449259 2.20 459374 65 10209 444048 2.25 454257 66 9859 439728 2.19 449587 67 9888 430685 2.24 440573 68 9558 422690 2.21 432248 69 9676 419420 2.25 429096 70 9402 410695 2.24 420097 71 9817 403306 2.38 413123 72 9248 399442 2.26 408690 73 9160 390951 2.29 400111 74 9318 385364 2.36 394682 75 9644 379774 2.48 389418 76 9295 367418 2.47 376713 77 9177 353035 2.53 362212 78 8711 328463 2.58 337174 79 6988 263429 2.58 270417 80 3055 119129 2.50 122184 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 153385 1694533 8.30 1847918 2 142185 1691541 7.75 1833726 3 123206 1709751 6.72 1832957 4 110716 1699151 6.12 1809867 5 111713 1663207 6.29 1774920 6 113135 1592458 6.63 1705593 7 100000 1598084 5.89 1698084 8 97420 1584431 5.79 1681851 9 101342 1607772 5.93 1709114 10 99343 1631094 5.74 1730437 11 97657 1594595 5.77 1692252 12 96905 1604616 5.70 1701521 13 98922 1628175 5.73 1727097 14 94039 1629848 5.46 1723887 15 95265 1653300 5.45 1748565 16 95071 1672577 5.38 1767648 17 92682 1665855 5.27 1758537 18 91938 1684931 5.17 1776869 19 93443 1698714 5.21 1792157 20 90553 1690312 5.08 1780865 21 91688 1700302 5.12 1791990 22 90941 1695213 5.09 1786154 23 87297 1701584 4.88 1788881 24 88445 1701529 4.94 1789974 25 87461 1717488 4.85 1804949 26 84770 1709062 4.73 1793832 27 85138 1715803 4.73 1800941 28 83267 1727125 4.60 1810392 29 82163 1708463 4.59 1790626 30 81494 1708976 4.55 1790470 31 80693 1746710 4.42 1827403 32 77318 1711070 4.32 1788388 33 78586 1705101 4.41 1783687 34 77630 1717568 4.32 1795198 35 74084 1716187 4.14 1790271 36 73276 1710326 4.11 1783602 37 71909 1714711 4.02 1786620 38 70493 1699582 3.98 1770075 39 69321 1697804 3.92 1767125 40 68137 1705463 3.84 1773600 41 66177 1691006 3.77 1757183 42 64824 1673594 3.73 1738418 43 63778 1673390 3.67 1737168 44 61256 1644159 3.59 1705415 45 60477 1632245 3.57 1692722 46 59536 1638160 3.51 1697696 47 58736 1617645 3.50 1676381 48 57015 1617871 3.40 1674886 49 55822 1612326 3.35 1668148 50 53909 1566581 3.33 1620490 51 54298 1545320 3.39 1599618 52 52076 1559321 3.23 1611397 53 50026 1514062 3.20 1564088 54 48911 1497065 3.16 1545976 55 48410 1490807 3.15 1539217 56 46633 1471789 3.07 1518422 57 46192 1467179 3.05 1513371 58 44628 1444927 3.00 1489555 59 45161 1430583 3.06 1475744 60 42521 1411025 2.93 1453546 61 42124 1388380 2.94 1430504 62 41733 1365132 2.97 1406865 63 40019 1358169 2.86 1398188 64 39643 1358210 2.84 1397853 65 38784 1320619 2.85 1359403 66 37466 1300161 2.80 1337627 67 37468 1290729 2.82 1328197 68 36663 1281721 2.78 1318384 69 35973 1259495 2.78 1295468 70 35203 1233002 2.78 1268205 71 35866 1210573 2.88 1246439 72 34390 1198763 2.79 1233153 73 34338 1171906 2.85 1206244 74 33246 1146969 2.82 1180215 75 35125 1121320 3.04 1156445 76 34239 1097269 3.03 1131508 77 32370 1055648 2.98 1088018 78 30400 978811 3.01 1009211 79 24751 794745 3.02 819496 80 10345 349068 2.88 359413 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 156527 88441 63.90 244968 2 156658 73000 68.21 229658 3 142284 69355 67.23 211639 4 120089 63064 65.57 183153 5 118079 60894 65.98 178973 6 116869 57816 66.90 174685 7 120186 63422 65.46 183608 8 117478 55265 68.01 172743 9 115530 53489 68.35 169019 10 116950 53707 68.53 170657 11 116902 53818 68.48 170720 12 112675 51630 68.58 164305 13 112187 49510 69.38 161697 14 111233 49713 69.11 160946 15 110744 47442 70.01 158186 16 108639 46545 70.01 155184 17 105399 46239 69.51 151638 18 102698 43770 70.12 146468 19 100239 42507 70.22 142746 20 99162 42127 70.18 141289 21 97452 40748 70.52 138200 22 94882 40265 70.21 135147 23 93640 39072 70.56 132712 24 93111 38053 70.99 131164 25 92067 37917 70.83 129984 26 89967 36608 71.08 126575 27 87501 35254 71.28 122755 28 86294 35161 71.05 121455 29 84957 34359 71.20 119316 30 82729 32468 71.82 115197 31 82868 32517 71.82 115385 32 81382 31547 72.06 112929 33 79901 30904 72.11 110805 34 79589 30735 72.14 110324 35 77039 29561 72.27 106600 36 74601 28623 72.27 103224 37 73175 28107 72.25 101282 38 72472 27534 72.47 100006 39 70924 26868 72.53 97792 40 70052 27289 71.97 97341 41 67152 25749 72.28 92901 42 65105 24645 72.54 89750 43 64078 24187 72.60 88265 44 63386 23699 72.79 87085 45 61604 23016 72.80 84620 46 60746 22763 72.74 83509 47 59517 22928 72.19 82445 48 57268 21679 72.54 78947 49 55924 21086 72.62 77010 50 54471 20886 72.28 75357 51 53002 19926 72.68 72928 52 52222 19891 72.42 72113 53 51033 19212 72.65 70245 54 49593 18945 72.36 68538 55 49264 18480 72.72 67744 56 47628 18352 72.19 65980 57 47239 18126 72.27 65365 58 45219 17270 72.36 62489 59 43914 17183 71.88 61097 60 42700 16365 72.29 59065 61 41775 16149 72.12 57924 62 40590 15753 72.04 56343 63 39528 15400 71.96 54928 64 38515 15013 71.95 53528 65 37749 14780 71.86 52529 66 35790 14300 71.45 50090 67 35882 14004 71.93 49886 68 34517 13782 71.47 48299 69 33520 13259 71.66 46779 70 32882 13396 71.05 46278 71 32332 13261 70.91 45593 72 30669 12924 70.35 43593 73 29982 12380 70.78 42362 74 29634 12380 70.53 42014 75 28154 11705 70.63 39859 76 26775 11346 70.24 38121 77 25569 11023 69.88 36592 78 23790 10497 69.38 34287 79 20295 9167 68.89 29462 80 13548 6450 67.75 19998 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47945 399302 10.72 447247 2 22518 353123 5.99 375641 3 22094 338518 6.13 360612 4 13205 327410 3.88 340615 5 14997 299848 4.76 314845 6 18786 294263 6.00 313049 7 11079 295270 3.62 306349 8 12400 303397 3.93 315797 9 10745 279604 3.70 290349 10 10214 277761 3.55 287975 11 9719 274536 3.42 284255 12 8995 277547 3.14 286542 13 8856 268164 3.20 277020 14 8216 261766 3.04 269982 15 7930 266096 2.89 274026 16 7742 257792 2.92 265534 17 7553 249551 2.94 257104 18 7329 248156 2.87 255485 19 6966 238800 2.83 245766 20 6610 233318 2.75 239928 21 6309 233017 2.64 239326 22 6096 224391 2.64 230487 23 6118 224481 2.65 230599 24 5746 221881 2.52 227627 25 5672 214154 2.58 219826 26 5349 210922 2.47 216271 27 5469 211145 2.52 216614 28 5094 203863 2.44 208957 29 4954 204794 2.36 209748 30 4492 196398 2.24 200890 31 4748 195861 2.37 200609 32 4405 189786 2.27 194191 33 4466 189242 2.31 193708 34 4043 182398 2.17 186441 35 3995 180269 2.17 184264 36 3832 175480 2.14 179312 37 3684 169897 2.12 173581 38 3684 167580 2.15 171264 39 3470 166594 2.04 170064 40 3296 161982 1.99 165278 41 3210 158961 1.98 162171 42 3199 155668 2.01 158867 43 3022 151580 1.95 154602 44 3033 146944 2.02 149977 45 2838 145414 1.91 148252 46 2814 141527 1.95 144341 47 2885 139026 2.03 141911 48 2763 134507 2.01 137270 49 2664 131088 1.99 133752 50 2598 127430 2.00 130028 51 2480 126157 1.93 128637 52 2503 122151 2.01 124654 53 2437 118548 2.01 120985 54 2287 116716 1.92 119003 55 2196 113928 1.89 116124 56 2280 111618 2.00 113898 57 2399 110481 2.13 112880 58 2102 105855 1.95 107957 59 2086 103614 1.97 105700 60 1948 102558 1.86 104506 61 2129 97166 2.14 99295 62 1911 95402 1.96 97313 63 1895 94504 1.97 96399 64 1855 91042 2.00 92897 65 1827 89067 2.01 90894 66 1712 86845 1.93 88557 67 1708 83952 1.99 85660 68 1631 82880 1.93 84511 69 1589 80569 1.93 82158 70 1636 78375 2.04 80011 71 1637 76813 2.09 78450 72 1498 74366 1.97 75864 73 1488 72624 2.01 74112 74 1442 70396 2.01 71838 75 1400 69413 1.98 70813 76 1295 66649 1.91 67944 77 1263 63552 1.95 64815 78 1255 59002 2.08 60257 79 1072 51467 2.04 52539 80 810 34433 2.30 35243 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 114840 1301253 8.11 1416093 2 92019 1097585 7.74 1189604 3 64823 1052996 5.80 1117819 4 52311 1003660 4.95 1055971 5 54908 964369 5.39 1019277 6 62225 891945 6.52 954170 7 42818 884045 4.62 926863 8 42598 859053 4.72 901651 9 43052 861421 4.76 904473 10 41082 857159 4.57 898241 11 38339 821385 4.46 859724 12 35384 816171 4.16 851555 13 34815 815048 4.10 849863 14 32889 801858 3.94 834747 15 31946 798467 3.85 830413 16 30706 792549 3.73 823255 17 28699 772655 3.58 801354 18 27707 763068 3.50 790775 19 26492 746299 3.43 772791 20 25461 729598 3.37 755059 21 24825 717763 3.34 742588 22 24025 699399 3.32 723424 23 23265 690598 3.26 713863 24 21938 678259 3.13 700197 25 21857 669916 3.16 691773 26 20227 656222 2.99 676449 27 20780 642592 3.13 663372 28 19418 636527 2.96 655945 29 18215 620477 2.85 638692 30 17671 610367 2.81 628038 31 18262 613520 2.89 631782 32 16200 587948 2.68 604148 33 16473 577240 2.77 593713 34 15443 573116 2.62 588559 35 14823 562379 2.57 577202 36 14023 551709 2.48 565732 37 14021 543972 2.51 557993 38 13330 530791 2.45 544121 39 12986 519546 2.44 532532 40 12502 513768 2.38 526270 41 12071 502755 2.34 514826 42 11433 489197 2.28 500630 43 11410 480994 2.32 492404 44 10754 465475 2.26 476229 45 10840 454874 2.33 465714 46 10464 451515 2.27 461979 47 10246 438260 2.28 448506 48 10081 436015 2.26 446096 49 9959 427779 2.28 437738 50 9235 408662 2.21 417897 51 8985 398241 2.21 407226 52 9117 395897 2.25 405014 53 8703 376910 2.26 385613 54 8550 368205 2.27 376755 55 8323 362673 2.24 370996 56 7961 353877 2.20 361838 57 8557 348442 2.40 356999 58 7769 338091 2.25 345860 59 7716 335224 2.25 342940 60 7440 324191 2.24 331631 61 7812 312671 2.44 320483 62 7144 306487 2.28 313631 63 7014 301043 2.28 308057 64 6965 299646 2.27 306611 65 6488 287211 2.21 293699 66 6525 277803 2.29 284328 67 6394 275067 2.27 281461 68 6368 273263 2.28 279631 69 6263 265775 2.30 272038 70 6080 255399 2.33 261479 71 5969 249138 2.34 255107 72 5697 246621 2.26 252318 73 5601 236450 2.31 242051 74 5412 228207 2.32 233619 75 5260 221758 2.32 227018 76 5292 215920 2.39 221212 77 4930 207879 2.32 212809 78 4615 194989 2.31 199604 79 4139 172386 2.34 176525 80 2656 115686 2.24 118342