CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 201885 97628 67.40 299513 2 225120 92496 70.88 317616 3 209122 89927 69.93 299049 4 198074 85625 69.82 283699 5 199316 84157 70.31 283473 6 199857 81139 71.12 280996 7 209992 85752 71.00 295744 8 205241 81927 71.47 287168 9 205984 80247 71.96 286231 10 214839 81108 72.59 295947 11 219181 83368 72.44 302549 12 218330 81124 72.91 299454 13 220120 80019 73.34 300139 14 219246 80876 73.05 300122 15 219122 79559 73.36 298681 16 221595 79518 73.59 301113 17 220756 80440 73.29 301196 18 221071 78374 73.83 299445 19 223048 79215 73.79 302263 20 224945 79753 73.83 304698 21 225635 79015 74.06 304650 22 224969 79144 73.98 304113 23 226171 79528 73.98 305699 24 225844 78399 74.23 304243 25 229094 78990 74.36 308084 26 228617 80271 74.01 308888 27 226776 78021 74.40 304797 28 227941 78659 74.34 306600 29 227786 77992 74.49 305778 30 225562 77218 74.50 302780 31 228842 78173 74.54 307015 32 228179 77705 74.60 305884 33 226576 77013 74.63 303589 34 229547 77811 74.68 307358 35 226786 76586 74.76 303372 36 223835 75547 74.77 299382 37 224561 76219 74.66 300780 38 223941 75773 74.72 299714 39 222403 73880 75.06 296283 40 222990 75306 74.75 298296 41 218446 73918 74.72 292364 42 215228 72634 74.77 287862 43 214260 72251 74.78 286511 44 212747 72278 74.64 285025 45 209257 71200 74.61 280457 46 210662 71851 74.57 282513 47 207018 70453 74.61 277471 48 203913 69726 74.52 273639 49 201459 69877 74.25 271336 50 199283 69544 74.13 268827 51 193463 67910 74.02 261373 52 191936 67330 74.03 259266 53 190180 66243 74.17 256423 54 188681 66084 74.06 254765 55 186651 65368 74.06 252019 56 184568 64748 74.03 249316 57 182630 63968 74.06 246598 58 179103 63377 73.86 242480 59 175162 62582 73.68 237744 60 171511 61320 73.66 232831 61 169078 61180 73.43 230258 62 165655 59545 73.56 225200 63 161930 58513 73.46 220443 64 159712 58062 73.34 217774 65 156645 56981 73.33 213626 66 153488 56180 73.21 209668 67 151227 55187 73.26 206414 68 148295 54551 73.11 202846 69 144859 53303 73.10 198162 70 143040 53396 72.82 196436 71 140556 52357 72.86 192913 72 135996 51599 72.49 187595 73 133031 50802 72.37 183833 74 130272 50856 71.92 181128 75 125921 48595 72.15 174516 76 122534 48005 71.85 170539 77 117536 46808 71.52 164344 78 108177 43093 71.51 151270 79 86403 35843 70.68 122246 80 39386 16509 70.46 55895 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 44903 458581 8.92 503484 2 27677 473179 5.53 500856 3 22735 475372 4.56 498107 4 16601 470361 3.41 486962 5 17913 454287 3.79 472200 6 19075 459556 3.99 478631 7 15031 465724 3.13 480755 8 15213 479281 3.08 494494 9 14549 466835 3.02 481384 10 13742 469591 2.84 483333 11 13692 470430 2.83 484122 12 13250 481000 2.68 494250 13 13414 472588 2.76 486002 14 12188 473663 2.51 485851 15 12309 486348 2.47 498657 16 12029 482770 2.43 494799 17 12009 481449 2.43 493458 18 11833 494362 2.34 506195 19 11546 490137 2.30 501683 20 11408 490445 2.27 501853 21 11635 497359 2.29 508994 22 11302 492768 2.24 504070 23 11117 498185 2.18 509302 24 11345 501755 2.21 513100 25 10828 498613 2.13 509441 26 11146 495058 2.20 506204 27 10939 506920 2.11 517859 28 10415 500904 2.04 511319 29 10795 504331 2.10 515126 30 10513 500084 2.06 510597 31 10449 502753 2.04 513202 32 10287 499695 2.02 509982 33 10483 503582 2.04 514065 34 10671 493594 2.12 504265 35 10103 494194 2.00 504297 36 9875 493390 1.96 503265 37 9868 484900 1.99 494768 38 9690 483363 1.97 493053 39 9397 490743 1.88 500140 40 9391 482423 1.91 491814 41 9351 478353 1.92 487704 42 9276 476941 1.91 486217 43 8926 470964 1.86 479890 44 8897 461602 1.89 470499 45 8847 465445 1.87 474292 46 8605 454568 1.86 463173 47 9159 452491 1.98 461650 48 8576 447391 1.88 455967 49 8706 439592 1.94 448298 50 8345 433367 1.89 441712 51 8918 431687 2.02 440605 52 8197 423495 1.90 431692 53 8123 416654 1.91 424777 54 7651 415174 1.81 422825 55 7783 409640 1.86 417423 56 7753 402334 1.89 410087 57 7809 402066 1.91 409875 58 7241 390298 1.82 397539 59 7834 384577 2.00 392411 60 7318 382577 1.88 389895 61 7095 371554 1.87 378649 62 7492 365302 2.01 372794 63 7135 363170 1.93 370305 64 6895 352907 1.92 359802 65 6847 347035 1.93 353882 66 6711 342669 1.92 349380 67 6537 335376 1.91 341913 68 6586 327217 1.97 333803 69 6289 323918 1.90 330207 70 6226 315541 1.93 321767 71 6544 309922 2.07 316466 72 6026 304215 1.94 310241 73 6208 298662 2.04 304870 74 6082 291308 2.05 297390 75 6501 288057 2.21 294558 76 6160 276738 2.18 282898 77 6079 266178 2.23 272257 78 5750 246480 2.28 252230 79 4827 197646 2.38 202473 80 2176 91147 2.33 93323 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 138092 1442242 8.74 1580334 2 128937 1447805 8.18 1576742 3 112347 1463022 7.13 1575369 4 102698 1453707 6.60 1556405 5 103563 1414981 6.82 1518544 6 103517 1368362 7.03 1471879 7 92903 1363946 6.38 1456849 8 90412 1352163 6.27 1442575 9 94405 1370926 6.44 1465331 10 92601 1389789 6.25 1482390 11 91286 1367308 6.26 1458594 12 90225 1375506 6.16 1465731 13 93629 1398337 6.28 1491966 14 88325 1400830 5.93 1489155 15 90082 1421216 5.96 1511298 16 88928 1439124 5.82 1528052 17 87374 1433805 5.74 1521179 18 86808 1452147 5.64 1538955 19 88304 1464245 5.69 1552549 20 86199 1455962 5.59 1542161 21 87019 1461627 5.62 1548646 22 85204 1460821 5.51 1546025 23 81385 1460889 5.28 1542274 24 81975 1461500 5.31 1543475 25 81341 1474427 5.23 1555768 26 78846 1464912 5.11 1543758 27 79502 1471762 5.12 1551264 28 77649 1477799 4.99 1555448 29 76319 1463926 4.95 1540245 30 75193 1461119 4.89 1536312 31 74260 1487763 4.75 1562023 32 70636 1456153 4.63 1526789 33 71710 1449464 4.71 1521174 34 69761 1457394 4.57 1527155 35 66911 1448380 4.42 1515291 36 65591 1441368 4.35 1506959 37 64930 1442796 4.31 1507726 38 62195 1425766 4.18 1487961 39 61291 1421431 4.13 1482722 40 59710 1423139 4.03 1482849 41 57942 1408306 3.95 1466248 42 56176 1390992 3.88 1447168 43 54594 1385241 3.79 1439835 44 52310 1360597 3.70 1412907 45 51333 1343793 3.68 1395126 46 49882 1343941 3.58 1393823 47 48574 1321912 3.54 1370486 48 46642 1317844 3.42 1364486 49 45893 1311064 3.38 1356957 50 43784 1269169 3.33 1312953 51 43852 1248013 3.39 1291865 52 41262 1258740 3.17 1300002 53 40462 1216729 3.22 1257191 54 38326 1200922 3.09 1239248 55 37282 1191150 3.03 1228432 56 35559 1171019 2.95 1206578 57 34904 1160872 2.92 1195776 58 33584 1141284 2.86 1174868 59 34387 1124691 2.97 1159078 60 31595 1105637 2.78 1137232 61 31181 1087091 2.79 1118272 62 30136 1063473 2.76 1093609 63 29403 1052252 2.72 1081655 64 28519 1047922 2.65 1076441 65 27712 1016571 2.65 1044283 66 27120 994993 2.65 1022113 67 26445 986409 2.61 1012854 68 25667 975950 2.56 1001617 69 25256 954742 2.58 979998 70 24639 931165 2.58 955804 71 25166 912029 2.69 937195 72 23470 900560 2.54 924030 73 23269 875908 2.59 899177 74 23118 855623 2.63 878741 75 24169 834515 2.81 858684 76 23227 817429 2.76 840656 77 22210 778898 2.77 801108 78 21239 723383 2.85 744622 79 16799 587054 2.78 603853 80 7114 262506 2.64 269620 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 132258 71400 64.94 203658 2 126324 56355 69.15 182679 3 113024 51595 68.66 164619 4 93610 46656 66.74 140266 5 91145 44580 67.15 135725 6 90390 41966 68.29 132356 7 94773 44680 67.96 139453 8 89445 39913 69.15 129358 9 88321 38307 69.75 126628 10 88943 38385 69.85 127328 11 89017 38631 69.74 127648 12 85464 36629 70.00 122093 13 84380 35263 70.53 119643 14 82923 34949 70.35 117872 15 82189 33656 70.95 115845 16 80446 32307 71.35 112753 17 78772 31852 71.21 110624 18 75275 30204 71.36 105479 19 73661 29526 71.39 103187 20 72196 28757 71.51 100953 21 70581 27744 71.78 98325 22 68539 26986 71.75 95525 23 67144 26333 71.83 93477 24 66090 25347 72.28 91437 25 65351 25336 72.06 90687 26 63823 24536 72.23 88359 27 61335 23458 72.33 84793 28 61508 23007 72.78 84515 29 59206 22059 72.86 81265 30 57568 21183 73.10 78751 31 57862 20802 73.56 78664 32 56126 20466 73.28 76592 33 54845 19952 73.33 74797 34 54948 19868 73.44 74816 35 52942 18866 73.73 71808 36 50459 17823 73.90 68282 37 50231 17615 74.04 67846 38 49368 17199 74.16 66567 39 48346 16572 74.47 64918 40 47840 16266 74.63 64106 41 45751 16011 74.08 61762 42 43384 15312 73.91 58696 43 42768 14694 74.43 57462 44 41952 14650 74.12 56602 45 40946 14127 74.35 55073 46 40324 13460 74.97 53784 47 39606 13501 74.58 53107 48 37851 12919 74.55 50770 49 36738 12592 74.47 49330 50 35742 12174 74.59 47916 51 34549 11710 74.69 46259 52 33536 11336 74.74 44872 53 32684 11242 74.41 43926 54 31901 10921 74.50 42822 55 31391 10750 74.49 42141 56 30363 10590 74.14 40953 57 30307 10445 74.37 40752 58 28868 9951 74.37 38819 59 27563 9679 74.01 37242 60 27064 9320 74.38 36384 61 26100 9299 73.73 35399 62 25509 9151 73.60 34660 63 24844 8477 74.56 33321 64 24117 8502 73.94 32619 65 23418 8209 74.04 31627 66 22660 7967 73.99 30627 67 22068 7561 74.48 29629 68 21467 7561 73.95 29028 69 20815 7271 74.11 28086 70 20157 7201 73.68 27358 71 19763 7097 73.58 26860 72 19053 7103 72.84 26156 73 18461 6815 73.04 25276 74 17876 6579 73.10 24455 75 17125 6251 73.26 23376 76 16131 6161 72.36 22292 77 15469 5845 72.58 21314 78 14255 5602 71.79 19857 79 12201 4941 71.18 17142 80 8220 3484 70.23 11704 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35999 323311 10.02 359310 2 15266 270935 5.33 286201 3 15553 255703 5.73 271256 4 8505 243973 3.37 252478 5 9895 219468 4.31 229363 6 12342 214743 5.43 227085 7 7368 215206 3.31 222574 8 8144 223940 3.51 232084 9 6753 201983 3.24 208736 10 6707 199992 3.24 206699 11 6421 197663 3.15 204084 12 5776 199811 2.81 205587 13 5432 192993 2.74 198425 14 5188 186722 2.70 191910 15 4937 187467 2.57 192404 16 4755 181321 2.56 186076 17 4591 175317 2.55 179908 18 4411 173061 2.49 177472 19 4132 165823 2.43 169955 20 3977 161596 2.40 165573 21 3829 160943 2.32 164772 22 3673 154197 2.33 157870 23 3517 154096 2.23 157613 24 3362 151467 2.17 154829 25 3329 145784 2.23 149113 26 3078 141349 2.13 144427 27 3165 141483 2.19 144648 28 2817 137534 2.01 140351 29 2830 136537 2.03 139367 30 2655 131341 1.98 133996 31 2681 129716 2.02 132397 32 2353 126102 1.83 128455 33 2526 124929 1.98 127455 34 2306 119447 1.89 121753 35 2170 117308 1.82 119478 36 2058 114606 1.76 116664 37 2004 110011 1.79 112015 38 2036 108503 1.84 110539 39 1821 108031 1.66 109852 40 1770 103922 1.67 105692 41 1725 101565 1.67 103290 42 1707 100247 1.67 101954 43 1639 96260 1.67 97899 44 1583 92704 1.68 94287 45 1467 92239 1.57 93706 46 1470 88665 1.63 90135 47 1422 87069 1.61 88491 48 1369 84506 1.59 85875 49 1403 81279 1.70 82682 50 1333 78643 1.67 79976 51 1294 77656 1.64 78950 52 1192 75047 1.56 76239 53 1220 72790 1.65 74010 54 1146 71451 1.58 72597 55 1098 69728 1.55 70826 56 1101 67402 1.61 68503 57 1141 67301 1.67 68442 58 1111 64266 1.70 65377 59 1067 62269 1.68 63336 60 996 61545 1.59 62541 61 1020 58343 1.72 59363 62 936 57198 1.61 58134 63 928 55863 1.63 56791 64 911 53875 1.66 54786 65 963 52162 1.81 53125 66 900 51109 1.73 52009 67 821 50003 1.62 50824 68 860 48094 1.76 48954 69 829 46796 1.74 47625 70 737 45705 1.59 46442 71 769 44463 1.70 45232 72 731 42856 1.68 43587 73 723 41736 1.70 42459 74 663 40107 1.63 40770 75 699 39528 1.74 40227 76 663 37682 1.73 38345 77 642 35837 1.76 36479 78 605 33548 1.77 34153 79 549 28900 1.86 29449 80 360 19285 1.83 19645 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 87092 1043393 7.70 1130485 2 65020 830066 7.26 895086 3 44589 781585 5.40 826174 4 35097 735370 4.56 770467 5 36526 699124 4.97 735650 6 42289 642524 6.18 684813 7 28331 631991 4.29 660322 8 28641 612493 4.47 641134 9 28949 615666 4.49 644615 10 27205 607877 4.28 635082 11 25646 581347 4.23 606993 12 23013 573975 3.85 596988 13 22322 571520 3.76 593842 14 21123 561148 3.63 582271 15 20606 558574 3.56 579180 16 19147 551664 3.35 570811 17 18208 535717 3.29 553925 18 17075 525950 3.14 543025 19 16735 510416 3.17 527151 20 15905 495889 3.11 511794 21 15206 487779 3.02 502985 22 14627 472633 3.00 487260 23 13896 465116 2.90 479012 24 13308 454535 2.84 467843 25 12891 447468 2.80 460359 26 12147 436040 2.71 448187 27 12425 427571 2.82 439996 28 11568 419798 2.68 431366 29 11166 407870 2.66 419036 30 10446 400114 2.54 410560 31 10627 401641 2.58 412268 32 9495 382849 2.42 392344 33 9740 373673 2.54 383413 34 8973 368632 2.38 377605 35 8667 360715 2.35 369382 36 8126 353759 2.25 361885 37 7966 346188 2.25 354154 38 7551 335751 2.20 343302 39 7366 329232 2.19 336598 40 7174 324122 2.17 331296 41 6912 316720 2.14 323632 42 6606 305419 2.12 312025 43 6395 299629 2.09 306024 44 6081 289365 2.06 295446 45 6078 282023 2.11 288101 46 5814 278023 2.05 283837 47 5742 269828 2.08 275570 48 5532 267582 2.03 273114 49 5392 261779 2.02 267171 50 5096 247844 2.01 252940 51 4967 241028 2.02 245995 52 4834 240908 1.97 245742 53 4875 227660 2.10 232535 54 4689 221658 2.07 226347 55 4537 216948 2.05 221485 56 4458 211443 2.06 215901 57 4566 208096 2.15 212662 58 4220 198765 2.08 202985 59 4067 197896 2.01 201963 60 4092 189898 2.11 193990 61 4333 183210 2.31 187543 62 3813 178797 2.09 182610 63 3733 176213 2.07 179946 64 3577 174158 2.01 177735 65 3562 165527 2.11 169089 66 3461 159606 2.12 163067 67 3362 158194 2.08 161556 68 3273 158583 2.02 161856 69 3223 153112 2.06 156335 70 3148 146252 2.11 149400 71 3142 141796 2.17 144938 72 2955 140185 2.06 143140 73 2921 132941 2.15 135862 74 2873 128525 2.19 131398 75 2684 124503 2.11 127187 76 2658 121063 2.15 123721 77 2525 115582 2.14 118107 78 2469 108741 2.22 111210 79 2104 96544 2.13 98648 80 1353 64569 2.05 65922