CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 184045 112747 62.01 296792 2 207311 106298 66.10 313609 3 189538 105768 64.18 295306 4 175741 101009 63.50 276750 5 177850 100169 63.97 278019 6 178341 98197 64.49 276538 7 182745 105739 63.35 288484 8 182529 98900 64.86 281429 9 183456 97041 65.40 280497 10 191089 99949 65.66 291038 11 193464 100888 65.73 294352 12 193076 98171 66.29 291247 13 194676 98295 66.45 292971 14 194116 98933 66.24 293049 15 195370 97048 66.81 292418 16 197360 97348 66.97 294708 17 195856 98856 66.46 294712 18 196258 96924 66.94 293182 19 197809 96133 67.30 293942 20 197586 97652 66.92 295238 21 198612 96971 67.19 295583 22 200025 98067 67.10 298092 23 199735 96776 67.36 296511 24 199999 97083 67.32 297082 25 201495 97822 67.32 299317 26 201122 98967 67.02 300089 27 200029 96240 67.52 296269 28 202004 97651 67.41 299655 29 200713 96699 67.49 297412 30 198909 94790 67.73 293699 31 201262 96356 67.62 297618 32 200814 96012 67.65 296826 33 198812 94580 67.76 293392 34 201168 95829 67.73 296997 35 199562 94909 67.77 294471 36 197736 93435 67.91 291171 37 196251 93861 67.65 290112 38 195609 93909 67.56 289518 39 194460 92335 67.80 286795 40 195329 92952 67.76 288281 41 190746 91143 67.67 281889 42 187666 90720 67.41 278386 43 186695 89237 67.66 275932 44 185977 89792 67.44 275769 45 182602 88203 67.43 270805 46 181671 88461 67.25 270132 47 180114 87951 67.19 268065 48 176873 86226 67.23 263099 49 174989 85463 67.19 260452 50 171559 85199 66.82 256758 51 167551 83064 66.86 250615 52 167281 81583 67.22 248864 53 164593 81410 66.91 246003 54 163122 80592 66.93 243714 55 162064 80533 66.80 242597 56 159199 79234 66.77 238433 57 157049 78336 66.72 235385 58 154343 77904 66.46 232247 59 150627 76307 66.37 226934 60 148800 74621 66.60 223421 61 146553 73705 66.54 220258 62 142977 73017 66.19 215994 63 138700 70796 66.21 209496 64 137453 70367 66.14 207820 65 134613 69164 66.06 203777 66 131132 67970 65.86 199102 67 129419 67141 65.84 196560 68 126926 65921 65.82 192847 69 123946 64522 65.77 188468 70 122920 63798 65.83 186718 71 119263 62547 65.60 181810 72 116095 61614 65.33 177709 73 113253 60585 65.15 173838 74 110774 60481 64.68 171255 75 106334 58224 64.62 164558 76 103857 56767 64.66 160624 77 99532 55672 64.13 155204 78 90308 51554 63.66 141862 79 73111 41653 63.71 114764 80 33898 19548 63.42 53446 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 47233 461704 9.28 508937 2 27233 475639 5.42 502872 3 23792 479936 4.72 503728 4 16343 476798 3.31 493141 5 17769 460472 3.72 478241 6 19730 463445 4.08 483175 7 14368 469475 2.97 483843 8 14914 480872 3.01 495786 9 13701 468543 2.84 482244 10 13378 469219 2.77 482597 11 13190 471503 2.72 484693 12 12448 482786 2.51 495234 13 12577 475816 2.58 488393 14 11975 477400 2.45 489375 15 11700 488072 2.34 499772 16 11614 485065 2.34 496679 17 11419 482802 2.31 494221 18 11295 494422 2.23 505717 19 11162 488751 2.23 499913 20 11009 489770 2.20 500779 21 10940 499168 2.14 510108 22 10977 492669 2.18 503646 23 10828 497318 2.13 508146 24 11073 502784 2.15 513857 25 10750 497002 2.12 507752 26 10881 494261 2.15 505142 27 10305 506997 1.99 517302 28 10341 499556 2.03 509897 29 10451 502429 2.04 512880 30 10084 498921 1.98 509005 31 10160 500280 1.99 510440 32 10093 497413 1.99 507506 33 10420 499607 2.04 510027 34 10478 489101 2.10 499579 35 10060 490267 2.01 500327 36 9726 489006 1.95 498732 37 9558 482122 1.94 491680 38 9587 478762 1.96 488349 39 9428 485231 1.91 494659 40 9129 475827 1.88 484956 41 9327 472789 1.93 482116 42 8778 471463 1.83 480241 43 8713 462478 1.85 471191 44 8783 456252 1.89 465035 45 8692 459195 1.86 467887 46 8444 449509 1.84 457953 47 8689 444921 1.92 453610 48 8372 441240 1.86 449612 49 8399 433538 1.90 441937 50 8193 425746 1.89 433939 51 8423 426869 1.94 435292 52 7744 416867 1.82 424611 53 7808 409804 1.87 417612 54 7650 408775 1.84 416425 55 7389 401724 1.81 409113 56 7439 394911 1.85 402350 57 7170 394570 1.78 401740 58 7303 381955 1.88 389258 59 7650 375704 2.00 383354 60 6937 372489 1.83 379426 61 6881 363567 1.86 370448 62 7188 356877 1.97 364065 63 6763 354830 1.87 361593 64 6595 343523 1.88 350118 65 6447 337907 1.87 344354 66 6333 333978 1.86 340311 67 6250 325142 1.89 331392 68 6095 319065 1.87 325160 69 6056 313844 1.89 319900 70 5888 306158 1.89 312046 71 6160 301842 2.00 308002 72 5835 296135 1.93 301970 73 5705 288516 1.94 294221 74 5707 282858 1.98 288565 75 6152 278837 2.16 284989 76 5898 268622 2.15 274520 77 5621 257155 2.14 262776 78 5435 238825 2.23 244260 79 4478 190661 2.29 195139 80 2061 89224 2.26 91285 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 137468 1434228 8.75 1571696 2 129615 1439435 8.26 1569050 3 113987 1454944 7.27 1568931 4 102372 1450481 6.59 1552853 5 104850 1420060 6.88 1524910 6 106966 1362907 7.28 1469873 7 94214 1362167 6.47 1456381 8 91944 1352185 6.37 1444129 9 96658 1368754 6.60 1465412 10 94646 1391144 6.37 1485790 11 93781 1365032 6.43 1458813 12 92296 1376671 6.28 1468967 13 95501 1396478 6.40 1491979 14 90420 1400762 6.06 1491182 15 92535 1423095 6.11 1515630 16 92008 1438402 6.01 1530410 17 89691 1431659 5.90 1521350 18 89838 1452057 5.83 1541895 19 91052 1463545 5.86 1554597 20 88034 1455813 5.70 1543847 21 89583 1464801 5.76 1554384 22 88271 1460692 5.70 1548963 23 84340 1459577 5.46 1543917 24 84711 1460146 5.48 1544857 25 83972 1471575 5.40 1555547 26 82017 1463921 5.31 1545938 27 82602 1467466 5.33 1550068 28 80667 1472619 5.19 1553286 29 79212 1458538 5.15 1537750 30 77487 1456958 5.05 1534445 31 77571 1483151 4.97 1560722 32 73451 1449681 4.82 1523132 33 74033 1441613 4.88 1515646 34 72572 1447935 4.77 1520507 35 68856 1442248 4.56 1511104 36 67596 1433973 4.50 1501569 37 66644 1430984 4.45 1497628 38 63990 1415385 4.33 1479375 39 63371 1411458 4.30 1474829 40 61704 1411392 4.19 1473096 41 59587 1396271 4.09 1455858 42 58150 1376318 4.05 1434468 43 56394 1371759 3.95 1428153 44 54080 1344525 3.87 1398605 45 52982 1325757 3.84 1378739 46 50763 1326198 3.69 1376961 47 49601 1303986 3.66 1353587 48 48131 1300983 3.57 1349114 49 46840 1291019 3.50 1337859 50 44360 1249378 3.43 1293738 51 44618 1231645 3.50 1276263 52 41825 1235660 3.27 1277485 53 40074 1197466 3.24 1237540 54 39113 1178641 3.21 1217754 55 37928 1167092 3.15 1205020 56 35848 1148301 3.03 1184149 57 35300 1139447 3.00 1174747 58 33956 1118467 2.95 1152423 59 34166 1101874 3.01 1136040 60 31507 1083204 2.83 1114711 61 30645 1061185 2.81 1091830 62 30172 1039132 2.82 1069304 63 28834 1028201 2.73 1057035 64 28216 1021121 2.69 1049337 65 27192 992438 2.67 1019630 66 26186 971781 2.62 997967 67 25915 960780 2.63 986695 68 24874 950413 2.55 975287 69 24637 929568 2.58 954205 70 24376 908260 2.61 932636 71 24371 886932 2.67 911303 72 23013 874195 2.56 897208 73 22670 850474 2.60 873144 74 22415 829262 2.63 851677 75 23246 809328 2.79 832574 76 22529 789254 2.78 811783 77 21162 754443 2.73 775605 78 19976 699830 2.78 719806 79 15942 568094 2.73 584036 80 6773 256100 2.58 262873 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 117417 80389 59.36 197806 2 114556 62951 64.54 177507 3 102057 58679 63.49 160736 4 80320 53547 60.00 133867 5 79351 50788 60.97 130139 6 78106 48419 61.73 126525 7 79334 52698 60.09 132032 8 76535 46376 62.27 122911 9 76315 44781 63.02 121096 10 77130 45359 62.97 122489 11 76149 45600 62.55 121749 12 73408 43341 62.88 116749 13 72281 41619 63.46 113900 14 71614 41271 63.44 112885 15 70701 40016 63.86 110717 16 69023 38457 64.22 107480 17 66440 37620 63.85 104060 18 64326 36052 64.08 100378 19 63403 34488 64.77 97891 20 61038 34155 64.12 95193 21 60069 33025 64.53 93094 22 58484 32229 64.47 90713 23 57506 31254 64.79 88760 24 55992 30459 64.77 86451 25 55664 29964 65.01 85628 26 53975 29598 64.58 83573 27 52287 28031 65.10 80318 28 52222 27876 65.20 80098 29 50513 26488 65.60 77001 30 48820 25724 65.49 74544 31 48094 25348 65.49 73442 32 47481 24950 65.55 72431 33 46203 23929 65.88 70132 34 46316 23606 66.24 69922 35 44642 22869 66.13 67511 36 43440 21823 66.56 65263 37 42489 21578 66.32 64067 38 41419 21364 65.97 62783 39 40229 20628 66.10 60857 40 40392 20300 66.55 60692 41 38451 19573 66.27 58024 42 36743 18874 66.06 55617 43 36458 18481 66.36 54939 44 35456 17845 66.52 53301 45 34617 17514 66.40 52131 46 33612 16922 66.51 50534 47 32840 16816 66.14 49656 48 31694 16132 66.27 47826 49 30931 15861 66.10 46792 50 29612 15495 65.65 45107 51 28897 14582 66.46 43479 52 28259 14408 66.23 42667 53 27649 13998 66.39 41647 54 26582 13634 66.10 40216 55 26181 13546 65.90 39727 56 25460 13188 65.88 38648 57 25241 12882 66.21 38123 58 23974 12531 65.67 36505 59 23298 12137 65.75 35435 60 22535 11839 65.56 34374 61 22061 11735 65.28 33796 62 21443 11186 65.72 32629 63 20215 10848 65.08 31063 64 20592 10612 65.99 31204 65 19601 10323 65.50 29924 66 18737 9867 65.50 28604 67 18410 9757 65.36 28167 68 17602 9624 64.65 27226 69 17210 9382 64.72 26592 70 16967 9201 64.84 26168 71 16614 8966 64.95 25580 72 15663 8716 64.25 24379 73 15406 8526 64.37 23932 74 14615 8246 63.93 22861 75 14393 7837 64.75 22230 76 13687 7725 63.92 21412 77 12928 7686 62.71 20614 78 11968 7048 62.94 19016 79 10223 6172 62.35 16395 80 6735 4316 60.94 11051 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 37061 319196 10.40 356257 2 15017 264861 5.37 279878 3 16794 251786 6.25 268580 4 8029 244083 3.18 252112 5 9436 215748 4.19 225184 6 12408 209657 5.59 222065 7 6888 211803 3.15 218691 8 7996 219926 3.51 227922 9 6349 198292 3.10 204641 10 6390 195461 3.17 201851 11 5896 195082 2.93 200978 12 5188 196785 2.57 201973 13 5037 191636 2.56 196673 14 4871 183685 2.58 188556 15 4690 184334 2.48 189024 16 4376 178175 2.40 182551 17 4388 171832 2.49 176220 18 4075 167715 2.37 171790 19 3918 161254 2.37 165172 20 3763 157055 2.34 160818 21 3480 155600 2.19 159080 22 3359 149912 2.19 153271 23 3481 148932 2.28 152413 24 3112 147917 2.06 151029 25 3038 141282 2.11 144320 26 2903 137043 2.07 139946 27 2936 137525 2.09 140461 28 2615 132885 1.93 135500 29 2580 131991 1.92 134571 30 2463 126907 1.90 129370 31 2492 124579 1.96 127071 32 2337 121077 1.89 123414 33 2386 120810 1.94 123196 34 2021 115441 1.72 117462 35 2062 113214 1.79 115276 36 1990 110212 1.77 112202 37 1902 106533 1.75 108435 38 1887 104683 1.77 106570 39 1737 104204 1.64 105941 40 1629 101064 1.59 102693 41 1698 98538 1.69 100236 42 1510 96029 1.55 97539 43 1522 93077 1.61 94599 44 1432 89405 1.58 90837 45 1370 89041 1.52 90411 46 1341 86317 1.53 87658 47 1415 84347 1.65 85762 48 1367 81050 1.66 82417 49 1281 78979 1.60 80260 50 1286 76383 1.66 77669 51 1166 75439 1.52 76605 52 1206 72416 1.64 73622 53 1180 70270 1.65 71450 54 1070 69521 1.52 70591 55 1076 67811 1.56 68887 56 1077 65369 1.62 66446 57 1103 64792 1.67 65895 58 1028 62179 1.63 63207 59 999 60305 1.63 61304 60 914 59356 1.52 60270 61 971 56363 1.69 57334 62 878 55156 1.57 56034 63 887 54587 1.60 55474 64 872 52189 1.64 53061 65 799 50493 1.56 51292 66 803 49745 1.59 50548 67 801 47761 1.65 48562 68 799 46683 1.68 47482 69 743 45207 1.62 45950 70 691 43975 1.55 44666 71 778 42539 1.80 43317 72 676 41766 1.59 42442 73 722 40518 1.75 41240 74 652 39255 1.63 39907 75 602 38144 1.55 38746 76 633 36884 1.69 37517 77 597 35119 1.67 35716 78 557 32845 1.67 33402 79 528 28301 1.83 28829 80 323 18948 1.68 19271 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 86031 1017278 7.80 1103309 2 63558 805046 7.32 868604 3 42845 754882 5.37 797727 4 31881 715277 4.27 747158 5 34703 681564 4.84 716267 6 42457 625489 6.36 667946 7 26296 615436 4.10 641732 8 27302 596621 4.38 623923 9 28187 599201 4.49 627388 10 26504 591989 4.29 618493 11 24345 566711 4.12 591056 12 22132 560230 3.80 582362 13 21481 560660 3.69 582141 14 20052 550721 3.51 570773 15 19922 548595 3.50 568517 16 18870 541810 3.37 560680 17 17757 527237 3.26 544994 18 16441 513533 3.10 529974 19 15802 496814 3.08 512616 20 14919 481196 3.01 496115 21 14545 472794 2.98 487339 22 14018 458547 2.97 472565 23 13440 449640 2.90 463080 24 12888 441125 2.84 454013 25 12427 433956 2.78 446383 26 11638 423842 2.67 435480 27 11934 415185 2.79 427119 28 11023 407186 2.64 418209 29 10568 396573 2.60 407141 30 10010 388108 2.51 398118 31 10252 387934 2.57 398186 32 9191 369327 2.43 378518 33 9515 361798 2.56 371313 34 8752 356278 2.40 365030 35 8459 349197 2.37 357656 36 8068 343352 2.30 351420 37 7872 336227 2.29 344099 38 7437 326237 2.23 333674 39 7347 319356 2.25 326703 40 6944 314254 2.16 321198 41 6684 306449 2.13 313133 42 6482 295443 2.15 301925 43 6369 291081 2.14 297450 44 5989 280923 2.09 286912 45 5941 272441 2.13 278382 46 5802 269355 2.11 275157 47 5590 261873 2.09 267463 48 5542 259252 2.09 264794 49 5343 255129 2.05 260472 50 5072 240467 2.07 245539 51 5038 233831 2.11 238869 52 4941 234222 2.07 239163 53 4774 219921 2.12 224695 54 4556 214570 2.08 219126 55 4621 210923 2.14 215544 56 4350 205015 2.08 209365 57 4655 202770 2.24 207425 58 4239 194263 2.14 198502 59 4145 192482 2.11 196627 60 4091 185224 2.16 189315 61 4133 177848 2.27 181981 62 3771 174104 2.12 177875 63 3851 171004 2.20 174855 64 3710 169166 2.15 172876 65 3581 161200 2.17 164781 66 3377 156258 2.12 159635 67 3421 153846 2.18 157267 68 3266 152523 2.10 155789 69 3256 148068 2.15 151324 70 3246 142336 2.23 145582 71 3205 138797 2.26 142002 72 3075 137051 2.19 140126 73 3019 130310 2.26 133329 74 2851 125858 2.22 128709 75 2807 121690 2.25 124497 76 2749 117953 2.28 120702 77 2547 112941 2.21 115488 78 2329 105830 2.15 108159 79 2011 93312 2.11 95323 80 1301 63165 2.02 64466