CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 284079 118033 70.65 402112 2 320546 110909 74.29 431455 3 296667 109863 72.98 406530 4 279306 103040 73.05 382346 5 281365 101099 73.57 382464 6 281782 98075 74.18 379857 7 290272 105710 73.30 395982 8 290892 96593 75.07 387485 9 289988 94084 75.50 384072 10 301809 96991 75.68 398800 11 307058 97800 75.84 404858 12 303027 94087 76.31 397114 13 308985 94432 76.59 403417 14 308663 94902 76.48 403565 15 310499 93231 76.91 403730 16 312508 93947 76.89 406455 17 312904 93867 76.92 406771 18 312065 92304 77.17 404369 19 313128 92363 77.22 405491 20 315742 92088 77.42 407830 21 317896 91393 77.67 409289 22 318451 92446 77.50 410897 23 319191 91091 77.80 410282 24 318741 91458 77.70 410199 25 323972 92016 77.88 415988 26 322777 92059 77.81 414836 27 319869 89033 78.23 408902 28 324910 91207 78.08 416117 29 322026 89675 78.22 411701 30 320301 88713 78.31 409014 31 324204 90469 78.18 414673 32 325211 89392 78.44 414603 33 321478 87986 78.51 409464 34 327227 89603 78.50 416830 35 323187 88540 78.50 411727 36 320371 86586 78.72 406957 37 321458 87184 78.66 408642 38 321186 87510 78.59 408696 39 319553 85993 78.80 405546 40 320759 87897 78.49 408656 41 314219 85302 78.65 399521 42 310688 83876 78.74 394564 43 308983 83946 78.64 392929 44 309378 84455 78.56 393833 45 304329 82368 78.70 386697 46 304260 82789 78.61 387049 47 302715 84015 78.28 386730 48 296997 81275 78.51 378272 49 296688 82651 78.21 379339 50 292472 81919 78.12 374391 51 284036 78811 78.28 362847 52 284179 79387 78.16 363566 53 281821 79169 78.07 360990 54 278309 78012 78.11 356321 55 278125 78078 78.08 356203 56 275125 77780 77.96 352905 57 273472 76926 78.05 350398 58 267663 75971 77.89 343634 59 263351 75144 77.80 338495 60 257623 73641 77.77 331264 61 256705 74405 77.53 331110 62 249957 72400 77.54 322357 63 244778 71807 77.32 316585 64 244259 71068 77.46 315327 65 239516 69726 77.45 309242 66 234122 68638 77.33 302760 67 231585 68038 77.29 299623 68 228363 67651 77.15 296014 69 223299 65952 77.20 289251 70 221770 66301 76.98 288071 71 216661 65676 76.74 282337 72 211221 64421 76.63 275642 73 208361 63808 76.56 272169 74 204087 63477 76.28 267564 75 196477 61166 76.26 257643 76 192844 60815 76.02 253659 77 184497 60139 75.42 244636 78 169333 56412 75.01 225745 79 136525 45693 74.92 182218 80 64252 21693 74.76 85945 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 60678 576457 9.52 637135 2 33437 591942 5.35 625379 3 29841 601461 4.73 631302 4 20864 597691 3.37 618555 5 23343 575514 3.90 598857 6 25311 583394 4.16 608705 7 19056 590287 3.13 609343 8 19514 601812 3.14 621326 9 18058 587764 2.98 605822 10 17275 586624 2.86 603899 11 17159 592533 2.81 609692 12 16382 603592 2.64 619974 13 16742 594406 2.74 611148 14 15854 595694 2.59 611548 15 15592 615839 2.47 631431 16 15424 609210 2.47 624634 17 15519 602898 2.51 618417 18 15198 620880 2.39 636078 19 14990 612356 2.39 627346 20 14534 612706 2.32 627240 21 14800 626271 2.31 641071 22 14337 617278 2.27 631615 23 14711 624537 2.30 639248 24 14944 629644 2.32 644588 25 14206 623412 2.23 637618 26 14418 619629 2.27 634047 27 13679 636584 2.10 650263 28 13472 628502 2.10 641974 29 14257 634421 2.20 648678 30 13443 629355 2.09 642798 31 13430 633433 2.08 646863 32 13163 628105 2.05 641268 33 13852 635407 2.13 649259 34 13648 621542 2.15 635190 35 12908 623028 2.03 635936 36 12851 624970 2.01 637821 37 12641 612525 2.02 625166 38 12718 612093 2.04 624811 39 12292 623134 1.93 635426 40 12150 611239 1.95 623389 41 12384 607411 2.00 619795 42 11933 609761 1.92 621694 43 11557 598436 1.89 609993 44 11980 589713 1.99 601693 45 11596 596687 1.91 608283 46 11366 584354 1.91 595720 47 11792 578742 2.00 590534 48 11461 577496 1.95 588957 49 11269 566931 1.95 578200 50 11474 557079 2.02 568553 51 11651 559542 2.04 571193 52 10919 547751 1.95 558670 53 10956 542188 1.98 553144 54 10616 540620 1.93 551236 55 10490 533914 1.93 544404 56 10359 526830 1.93 537189 57 10369 528535 1.92 538904 58 9942 513529 1.90 523471 59 10629 506640 2.05 517269 60 9810 507593 1.90 517403 61 9786 491348 1.95 501134 62 10413 482610 2.11 493023 63 9645 483344 1.96 492989 64 9289 468026 1.95 477315 65 9547 462698 2.02 472245 66 9202 457746 1.97 466948 67 9001 448649 1.97 457650 68 8897 442538 1.97 451435 69 8921 435503 2.01 444424 70 8642 426088 1.99 434730 71 9085 420294 2.12 429379 72 8461 415929 1.99 424390 73 8386 407130 2.02 415516 74 8604 398501 2.11 407105 75 8979 395495 2.22 404474 76 8745 379971 2.25 388716 77 8296 366179 2.22 374475 78 8064 341086 2.31 349150 79 6822 274946 2.42 281768 80 3082 130056 2.31 133138 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 152597 1729310 8.11 1881907 2 142296 1721444 7.63 1863740 3 121258 1738824 6.52 1860082 4 108926 1734442 5.91 1843368 5 109843 1696496 6.08 1806339 6 113253 1630086 6.50 1743339 7 98314 1638100 5.66 1736414 8 95838 1617390 5.59 1713228 9 99532 1638133 5.73 1737665 10 98411 1665686 5.58 1764097 11 96000 1635953 5.54 1731953 12 95049 1643950 5.47 1738999 13 98395 1673307 5.55 1771702 14 92123 1672750 5.22 1764873 15 94064 1697447 5.25 1791511 16 93064 1721914 5.13 1814978 17 91401 1711257 5.07 1802658 18 90480 1733801 4.96 1824281 19 92120 1750319 5.00 1842439 20 88913 1737265 4.87 1826178 21 89916 1743745 4.90 1833661 22 88273 1747330 4.81 1835603 23 85925 1750562 4.68 1836487 24 86491 1751528 4.71 1838019 25 85259 1767381 4.60 1852640 26 82991 1755546 4.51 1838537 27 82826 1759696 4.50 1842522 28 81204 1776357 4.37 1857561 29 79778 1751617 4.36 1831395 30 78921 1751249 4.31 1830170 31 78941 1788414 4.23 1867355 32 74694 1753822 4.08 1828516 33 75726 1742356 4.17 1818082 34 74419 1754515 4.07 1828934 35 70888 1746085 3.90 1816973 36 69459 1746705 3.82 1816164 37 69780 1748746 3.84 1818526 38 66808 1726825 3.72 1793633 39 66164 1723465 3.70 1789629 40 64432 1730128 3.59 1794560 41 62507 1712564 3.52 1775071 42 60756 1693284 3.46 1754040 43 59196 1694137 3.38 1753333 44 57572 1663956 3.34 1721528 45 56608 1647113 3.32 1703721 46 54770 1653779 3.21 1708549 47 53193 1626664 3.17 1679857 48 52355 1622518 3.13 1674873 49 51423 1621776 3.07 1673199 50 49245 1572932 3.04 1622177 51 49474 1551529 3.09 1601003 52 46361 1566305 2.87 1612666 53 45207 1515448 2.90 1560655 54 43652 1495804 2.84 1539456 55 42882 1489156 2.80 1532038 56 41105 1464293 2.73 1505398 57 40618 1457552 2.71 1498170 58 39244 1438139 2.66 1477383 59 39875 1418843 2.73 1458718 60 37243 1398834 2.59 1436077 61 36519 1376599 2.58 1413118 62 36269 1351693 2.61 1387962 63 34884 1340245 2.54 1375129 64 33872 1339477 2.47 1373349 65 33521 1303452 2.51 1336973 66 32387 1281749 2.46 1314136 67 31794 1271142 2.44 1302936 68 31280 1259008 2.42 1290288 69 30629 1236623 2.42 1267252 70 29885 1210367 2.41 1240252 71 30349 1187755 2.49 1218104 72 28990 1173530 2.41 1202520 73 29128 1147312 2.48 1176440 74 28456 1122860 2.47 1151316 75 29908 1096419 2.66 1126327 76 28934 1075910 2.62 1104844 77 27622 1030740 2.61 1058362 78 26072 960297 2.64 986369 79 21616 784580 2.68 806196 80 9292 358422 2.53 367714 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 193440 87717 68.80 281157 2 195775 71293 73.31 267068 3 178600 68658 72.23 247258 4 146525 62420 70.13 208945 5 144459 59185 70.94 203644 6 142980 55718 71.96 198698 7 143798 61904 69.91 205702 8 142918 52782 73.03 195700 9 141257 50199 73.78 191456 10 144713 51324 73.82 196037 11 142949 51480 73.52 194429 12 138313 48617 73.99 186930 13 137101 46698 74.59 183799 14 136323 46754 74.46 183077 15 134569 45181 74.86 179750 16 132330 44175 74.97 176505 17 129453 43468 74.86 172921 18 124510 41045 75.21 165555 19 121946 39467 75.55 161413 20 118964 38425 75.59 157389 21 118499 37630 75.90 156129 22 115870 36979 75.81 152849 23 114066 35994 76.01 150060 24 111991 35159 76.11 147150 25 111900 35350 75.99 147250 26 109528 33763 76.44 143291 27 105756 32071 76.73 137827 28 105100 32307 76.49 137407 29 102448 30894 76.83 133342 30 100024 29648 77.14 129672 31 99459 29464 77.15 128923 32 99021 28960 77.37 127981 33 95765 27667 77.59 123432 34 95213 27407 77.65 122620 35 92639 26677 77.64 119316 36 90153 25459 77.98 115612 37 88973 25018 78.05 113991 38 87829 24603 78.12 112432 39 85777 24418 77.84 110195 40 84980 23835 78.10 108815 41 81110 22916 77.97 104026 42 78741 21815 78.31 100556 43 78019 21259 78.59 99278 44 76373 21042 78.40 97415 45 74394 20428 78.46 94822 46 72931 20281 78.24 93212 47 71831 20210 78.04 92041 48 69414 19047 78.47 88461 49 67992 18760 78.38 86752 50 65994 18426 78.17 84420 51 63770 17501 78.47 81271 52 62328 17426 78.15 79754 53 61099 16872 78.36 77971 54 59622 16527 78.30 76149 55 58852 16347 78.26 75199 56 57850 16087 78.24 73937 57 57232 15903 78.26 73135 58 54267 15344 77.96 69611 59 52951 14932 78.00 67883 60 51210 14538 77.89 65748 61 50514 14312 77.92 64826 62 48973 13864 77.94 62837 63 47639 13459 77.97 61098 64 46845 13273 77.92 60118 65 44928 12971 77.60 57899 66 43780 12634 77.60 56414 67 42794 12288 77.69 55082 68 41754 12149 77.46 53903 69 40175 11850 77.22 52025 70 39479 11599 77.29 51078 71 38610 11556 76.96 50166 72 37267 10940 77.31 48207 73 36602 10894 77.06 47496 74 35143 10778 76.53 45921 75 33608 10247 76.63 43855 76 32776 9865 76.86 42641 77 31099 9707 76.21 40806 78 28691 9258 75.60 37949 79 24216 7913 75.37 32129 80 15657 5420 74.28 21077 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52826 416593 11.25 469419 2 22077 361695 5.75 383772 3 24030 351975 6.39 376005 4 12474 345429 3.49 357903 5 14423 307300 4.48 321723 6 18854 301422 5.89 320276 7 10592 306094 3.34 316686 8 12201 315061 3.73 327262 9 10149 287873 3.41 298022 10 9891 283789 3.37 293680 11 9338 283530 3.19 292868 12 8332 285889 2.83 294221 13 7870 278851 2.74 286721 14 7616 268975 2.75 276591 15 7390 273151 2.63 280541 16 7023 265964 2.57 272987 17 7084 253630 2.72 260714 18 6785 253269 2.61 260054 19 6302 243452 2.52 249754 20 6116 237964 2.51 244080 21 6016 237532 2.47 243548 22 5647 228222 2.41 233869 23 5546 228043 2.37 233589 24 5120 225106 2.22 230226 25 5091 216689 2.30 221780 26 4878 211872 2.25 216750 27 4807 213704 2.20 218511 28 4378 207034 2.07 211412 29 4404 206280 2.09 210684 30 4110 197244 2.04 201354 31 4311 197228 2.14 201539 32 3852 191699 1.97 195551 33 3917 191435 2.01 195352 34 3532 182568 1.90 186100 35 3403 179641 1.86 183044 36 3270 176993 1.81 180263 37 3321 170182 1.91 173503 38 3145 168439 1.83 171584 39 3027 168299 1.77 171326 40 2938 162084 1.78 165022 41 2915 160294 1.79 163209 42 2690 157093 1.68 159783 43 2573 151362 1.67 153935 44 2714 146290 1.82 149004 45 2630 146316 1.77 148946 46 2438 141054 1.70 143492 47 2481 139372 1.75 141853 48 2376 135225 1.73 137601 49 2364 130627 1.78 132991 50 2280 126986 1.76 129266 51 2270 126093 1.77 128363 52 2144 122140 1.73 124284 53 2116 119014 1.75 121130 54 2138 116695 1.80 118833 55 1978 113796 1.71 115774 56 1974 111338 1.74 113312 57 2151 110387 1.91 112538 58 1749 105536 1.63 107285 59 1790 102553 1.72 104343 60 1786 102577 1.71 104363 61 1807 96981 1.83 98788 62 1760 95095 1.82 96855 63 1682 93961 1.76 95643 64 1572 90368 1.71 91940 65 1656 88313 1.84 89969 66 1503 86399 1.71 87902 67 1477 84126 1.73 85603 68 1433 82548 1.71 83981 69 1531 79963 1.88 81494 70 1382 77754 1.75 79136 71 1490 76020 1.92 77510 72 1329 73790 1.77 75119 73 1314 72269 1.79 73583 74 1311 69726 1.85 71037 75 1206 69158 1.71 70364 76 1188 65720 1.78 66908 77 1202 62544 1.89 63746 78 1088 58450 1.83 59538 79 964 50101 1.89 51065 80 614 32948 1.83 33562 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 106943 1280561 7.71 1387504 2 85407 1059608 7.46 1145015 3 58337 1009667 5.46 1068004 4 44008 968584 4.35 1012592 5 47678 930757 4.87 978435 6 58058 856319 6.35 914377 7 36248 851811 4.08 888059 8 37457 824788 4.34 862245 9 38266 830540 4.40 868806 10 36309 824880 4.22 861189 11 33922 793650 4.10 827572 12 30706 786070 3.76 816776 13 29938 788686 3.66 818624 14 27897 775327 3.47 803224 15 27612 777261 3.43 804873 16 25866 768073 3.26 793939 17 24454 745510 3.18 769964 18 23306 731312 3.09 754618 19 22364 716947 3.02 739311 20 20877 696609 2.91 717486 21 20591 685945 2.91 706536 22 19582 667924 2.85 687506 23 19005 659510 2.80 678515 24 18204 646570 2.74 664774 25 17587 638880 2.68 656467 26 16824 624403 2.62 641227 27 16918 613499 2.68 630417 28 15665 605892 2.52 621557 29 14780 591503 2.44 606283 30 14169 579785 2.39 593954 31 14709 580398 2.47 595107 32 13474 558354 2.36 571828 33 13439 545731 2.40 559170 34 12259 542661 2.21 554920 35 11987 530880 2.21 542867 36 11531 521921 2.16 533452 37 11001 513759 2.10 524760 38 10584 499938 2.07 510522 39 10128 490977 2.02 501105 40 9932 483818 2.01 493750 41 9437 472578 1.96 482015 42 9152 460713 1.95 469865 43 8777 454308 1.90 463085 44 8598 439234 1.92 447832 45 8436 429131 1.93 437567 46 8260 425936 1.90 434196 47 7874 413439 1.87 421313 48 7748 409382 1.86 417130 49 7724 403259 1.88 410983 50 7485 382638 1.92 390123 51 7224 374892 1.89 382116 52 7194 374183 1.89 381377 53 6867 355304 1.90 362171 54 6803 346130 1.93 352933 55 6631 341530 1.90 348161 56 6428 331784 1.90 338212 57 6802 327770 2.03 334572 58 6184 316885 1.91 323069 59 6124 313562 1.92 319686 60 5753 302104 1.87 307857 61 6105 292869 2.04 298974 62 5390 287207 1.84 292597 63 5363 281122 1.87 286485 64 5317 280286 1.86 285603 65 5305 267238 1.95 272543 66 5054 261118 1.90 266172 67 5070 257220 1.93 262290 68 4950 255159 1.90 260109 69 4663 248473 1.84 253136 70 4517 239498 1.85 244015 71 4703 233429 1.97 238132 72 4492 229247 1.92 233739 73 4272 219577 1.91 223849 74 4109 212799 1.89 216908 75 4112 208011 1.94 212123 76 4000 202025 1.94 206025 77 3938 193341 2.00 197279 78 3587 179818 1.96 183405 79 3131 158210 1.94 161341 80 2093 105254 1.95 107347