CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 144160 81687 63.83 225847 2 159441 78940 66.88 238381 3 154205 77145 66.65 231350 4 149560 73249 67.12 222809 5 149115 72902 67.16 222017 6 149785 70925 67.87 220710 7 154476 75540 67.16 230016 8 153840 71224 68.35 225064 9 151884 69217 68.69 221101 10 158507 70530 69.21 229037 11 160040 71972 68.98 232012 12 159884 69902 69.58 229786 13 161533 70331 69.67 231864 14 163220 71297 69.60 234517 15 164379 69571 70.26 233950 16 166092 69928 70.37 236020 17 165287 70951 69.97 236238 18 164636 69646 70.27 234282 19 165160 68961 70.54 234121 20 164398 69634 70.25 234032 21 165593 69303 70.50 234896 22 167228 69826 70.54 237054 23 167464 70223 70.46 237687 24 167932 69406 70.76 237338 25 169386 70341 70.66 239727 26 169284 70676 70.55 239960 27 166800 69414 70.61 236214 28 170003 70322 70.74 240325 29 168639 69463 70.83 238102 30 168468 68717 71.03 237185 31 170264 69682 70.96 239946 32 170628 69202 71.15 239830 33 169420 69243 70.99 238663 34 172100 69867 71.13 241967 35 169608 69018 71.08 238626 36 168134 67868 71.24 236002 37 168103 68664 71.00 236767 38 168378 68960 70.94 237338 39 168262 68109 71.19 236371 40 168851 68412 71.17 237263 41 166117 67716 71.04 233833 42 163368 66504 71.07 229872 43 164052 66493 71.16 230545 44 162684 67030 70.82 229714 45 160529 65557 71.00 226086 46 161208 66040 70.94 227248 47 160003 66590 70.61 226593 48 157979 65373 70.73 223352 49 157403 64824 70.83 222227 50 154523 64508 70.55 219031 51 150963 63285 70.46 214248 52 151204 62979 70.60 214183 53 150778 62776 70.60 213554 54 148393 62597 70.33 210990 55 148247 61691 70.61 209938 56 146987 62056 70.31 209043 57 145408 61457 70.29 206865 58 142940 61187 70.03 204127 59 140299 59904 70.08 200203 60 137401 59190 69.89 196591 61 137012 58891 69.94 195903 62 133759 57633 69.89 191392 63 131623 57443 69.62 189066 64 130425 56509 69.77 186934 65 127563 55933 69.52 183496 66 125886 54688 69.71 180574 67 124821 54575 69.58 179396 68 123148 53727 69.62 176875 69 119323 52936 69.27 172259 70 118849 53165 69.09 172014 71 116511 52526 68.93 169037 72 113213 51434 68.76 164647 73 111792 51001 68.67 162793 74 109863 50170 68.65 160033 75 105815 48959 68.37 154774 76 102951 48274 68.08 151225 77 98301 46737 67.78 145038 78 90136 43122 67.64 133258 79 71595 34654 67.38 106249 80 31748 15654 66.98 47402 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 28410 341578 7.68 369988 2 19550 351836 5.26 371386 3 16330 354719 4.40 371049 4 13266 351524 3.64 364790 5 14198 340529 4.00 354727 6 14353 344192 4.00 358545 7 12158 347438 3.38 359596 8 12110 353386 3.31 365496 9 11568 348636 3.21 360204 10 11576 345619 3.24 357195 11 11691 347957 3.25 359648 12 10886 353294 2.99 364180 13 10852 350740 3.00 361592 14 10709 350828 2.96 361537 15 10594 362231 2.84 372825 16 10304 360300 2.78 370604 17 10201 355565 2.79 365766 18 9903 365143 2.64 375046 19 9660 361413 2.60 371073 20 9570 361347 2.58 370917 21 9772 367960 2.59 377732 22 9560 363412 2.56 372972 23 9608 367038 2.55 376646 24 9325 372718 2.44 382043 25 9402 368693 2.49 378095 26 9264 365999 2.47 375263 27 9150 375899 2.38 385049 28 8969 370407 2.36 379376 29 9069 374801 2.36 383870 30 8894 371513 2.34 380407 31 8677 375057 2.26 383734 32 8695 371502 2.29 380197 33 8728 376629 2.26 385357 34 8476 371702 2.23 380178 35 8757 368313 2.32 377070 36 8448 369593 2.23 378041 37 8455 363256 2.27 371711 38 8463 362605 2.28 371068 39 8213 368409 2.18 376622 40 8119 365420 2.17 373539 41 8076 361775 2.18 369851 42 7812 364358 2.10 372170 43 7858 357480 2.15 365338 44 7887 351291 2.20 359178 45 7769 357057 2.13 364826 46 7644 349303 2.14 356947 47 7880 347695 2.22 355575 48 7554 346033 2.14 353587 49 7485 342041 2.14 349526 50 8417 335048 2.45 343465 51 7438 338429 2.15 345867 52 7683 330311 2.27 337994 53 7391 327532 2.21 334923 54 6957 327302 2.08 334259 55 7087 323386 2.14 330473 56 7040 318921 2.16 325961 57 6848 321007 2.09 327855 58 6748 311489 2.12 318237 59 6746 308764 2.14 315510 60 6737 307824 2.14 314561 61 6606 299176 2.16 305782 62 6525 294082 2.17 300607 63 6459 293991 2.15 300450 64 6419 288187 2.18 294606 65 6298 283394 2.17 289692 66 6206 281088 2.16 287294 67 6181 274880 2.20 281061 68 6074 270547 2.20 276621 69 6062 268320 2.21 274382 70 6033 261865 2.25 267898 71 6008 258314 2.27 264322 72 5874 256450 2.24 262324 73 5834 250552 2.28 256386 74 5900 244761 2.35 250661 75 5688 242713 2.29 248401 76 5584 234255 2.33 239839 77 5692 222789 2.49 228481 78 5350 205000 2.54 210350 79 4384 161927 2.64 166311 80 1938 72393 2.61 74331 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 90432 1059277 7.87 1149709 2 83870 1054938 7.36 1138808 3 74798 1059777 6.59 1134575 4 68893 1050187 6.16 1119080 5 67462 1018637 6.21 1086099 6 66830 990913 6.32 1057743 7 61051 991110 5.80 1052161 8 58805 980089 5.66 1038894 9 61424 993151 5.82 1054575 10 60746 1005182 5.70 1065928 11 59441 986581 5.68 1046022 12 58792 987657 5.62 1046449 13 59404 1004891 5.58 1064295 14 57516 999370 5.44 1056886 15 58445 1013095 5.45 1071540 16 57524 1026791 5.31 1084315 17 56359 1017283 5.25 1073642 18 55955 1031044 5.15 1086999 19 56661 1041800 5.16 1098461 20 54580 1035135 5.01 1089715 21 56030 1042363 5.10 1098393 22 54994 1040418 5.02 1095412 23 52707 1040306 4.82 1093013 24 52258 1045552 4.76 1097810 25 52828 1047528 4.80 1100356 26 50781 1043513 4.64 1094294 27 50975 1049784 4.63 1100759 28 49895 1055698 4.51 1105593 29 49479 1043687 4.53 1093166 30 48254 1047406 4.40 1095660 31 48291 1068855 4.32 1117146 32 46878 1049473 4.28 1096351 33 45709 1045473 4.19 1091182 34 44931 1052807 4.09 1097738 35 44676 1047498 4.09 1092174 36 43161 1046480 3.96 1089641 37 43005 1049847 3.94 1092852 38 41947 1036033 3.89 1077980 39 41222 1037291 3.82 1078513 40 40923 1042063 3.78 1082986 41 39349 1029225 3.68 1068574 42 38402 1022105 3.62 1060507 43 37527 1022429 3.54 1059956 44 36509 1004153 3.51 1040662 45 35683 995917 3.46 1031600 46 34918 999392 3.38 1034310 47 34092 986296 3.34 1020388 48 33424 986116 3.28 1019540 49 32851 984106 3.23 1016957 50 34040 950379 3.46 984419 51 31133 949661 3.17 980794 52 31503 949241 3.21 980744 53 29752 924048 3.12 953800 54 28497 913851 3.02 942348 55 28369 910559 3.02 938928 56 27143 897904 2.93 925047 57 26936 896119 2.92 923055 58 25971 882917 2.86 908888 59 25349 875177 2.81 900526 60 25078 860260 2.83 885338 61 24682 849385 2.82 874067 62 23846 833938 2.78 857784 63 23528 828377 2.76 851905 64 23004 827844 2.70 850848 65 22349 806602 2.70 828951 66 21808 791414 2.68 813222 67 21707 787253 2.68 808960 68 20947 781394 2.61 802341 69 20912 765395 2.66 786307 70 20218 750051 2.62 770269 71 20219 737749 2.67 757968 72 19764 728257 2.64 748021 73 19648 712559 2.68 732207 74 19455 695917 2.72 715372 75 19145 680843 2.74 699988 76 19295 666752 2.81 686047 77 18674 633257 2.86 651931 78 17525 581797 2.92 599322 79 14256 466363 2.97 480619 80 5729 200270 2.78 205999 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 103291 63273 62.01 166564 2 99728 53349 65.15 153077 3 92251 49596 65.04 141847 4 81946 45372 64.36 127318 5 80493 43361 64.99 123854 6 79655 41862 65.55 121517 7 80395 44396 64.42 124791 8 78426 39652 66.42 118078 9 76749 38279 66.72 115028 10 78370 38234 67.21 116604 11 78071 38338 67.07 116409 12 74617 36426 67.20 111043 13 75206 35580 67.88 110786 14 74448 35767 67.55 110215 15 73660 34598 68.04 108258 16 73113 33374 68.66 106487 17 71012 33527 67.93 104539 18 68698 32227 68.07 100925 19 68091 30930 68.76 99021 20 65706 30947 67.98 96653 21 65142 30124 68.38 95266 22 63610 29418 68.38 93028 23 63048 29039 68.47 92087 24 62565 27834 69.21 90399 25 61735 27609 69.10 89344 26 59957 27074 68.89 87031 27 57932 25834 69.16 83766 28 58241 25643 69.43 83884 29 56336 25029 69.24 81365 30 54982 24306 69.34 79288 31 55089 24285 69.40 79374 32 53615 23410 69.61 77025 33 52823 22832 69.82 75655 34 52552 23103 69.46 75655 35 50873 22121 69.69 72994 36 49655 21088 70.19 70743 37 48336 20998 69.71 69334 38 47788 20791 69.68 68579 39 47188 20006 70.23 67194 40 46953 19652 70.49 66605 41 44554 19229 69.85 63783 42 42848 18673 69.65 61521 43 42636 17931 70.39 60567 44 41727 17677 70.24 59404 45 40461 17384 69.95 57845 46 39735 17279 69.69 57014 47 39011 17071 69.56 56082 48 37999 16250 70.05 54249 49 36748 15884 69.82 52632 50 36062 15709 69.66 51771 51 34519 14820 69.96 49339 52 34108 14701 69.88 48809 53 33219 14490 69.63 47709 54 32525 14161 69.67 46686 55 31990 13871 69.75 45861 56 31312 13772 69.45 45084 57 30602 13536 69.33 44138 58 29523 13341 68.88 42864 59 28759 12729 69.32 41488 60 28070 12416 69.33 40486 61 27152 12143 69.10 39295 62 26330 11823 69.01 38153 63 25834 11496 69.20 37330 64 25482 11127 69.61 36609 65 24444 10895 69.17 35339 66 23560 10440 69.29 34000 67 23065 10392 68.94 33457 68 22379 10271 68.54 32650 69 21992 9837 69.09 31829 70 21357 9902 68.32 31259 71 20985 9604 68.60 30589 72 20010 9403 68.03 29413 73 19606 9371 67.66 28977 74 18903 9210 67.24 28113 75 18161 8646 67.75 26807 76 17635 8376 67.80 26011 77 16512 8071 67.17 24583 78 15287 7808 66.19 23095 79 13116 6814 65.81 19930 80 8594 4658 64.85 13252 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 24282 257195 8.63 281477 2 13266 224674 5.58 237940 3 12072 217641 5.26 229713 4 8255 204998 3.87 213253 5 9091 190863 4.55 199954 6 10033 187696 5.07 197729 7 6836 188098 3.51 194934 8 7197 190024 3.65 197221 9 6545 177925 3.55 184470 10 6396 175281 3.52 181677 11 6049 173467 3.37 179516 12 5728 172781 3.21 178509 13 5473 168026 3.15 173499 14 5271 164344 3.11 169615 15 5088 167712 2.94 172800 16 5083 162462 3.03 167545 17 4734 156944 2.93 161678 18 4547 156335 2.83 160882 19 4447 152206 2.84 156653 20 4137 147887 2.72 152024 21 4037 147104 2.67 151141 22 3876 142448 2.65 146324 23 3813 142259 2.61 146072 24 3745 140607 2.59 144352 25 3583 135470 2.58 139053 26 3433 132803 2.52 136236 27 3392 133907 2.47 137299 28 3236 129155 2.44 132391 29 3303 129303 2.49 132606 30 3015 124188 2.37 127203 31 2868 122994 2.28 125862 32 2743 119271 2.25 122014 33 2673 119603 2.19 122276 34 2565 114997 2.18 117562 35 2512 112429 2.19 114941 36 2354 110459 2.09 112813 37 2358 107102 2.15 109460 38 2243 104596 2.10 106839 39 2234 104590 2.09 106824 40 2111 101662 2.03 103773 41 2133 99382 2.10 101515 42 2002 97401 2.01 99403 43 1948 94899 2.01 96847 44 1955 90886 2.11 92841 45 1836 91090 1.98 92926 46 1744 87879 1.95 89623 47 1806 86618 2.04 88424 48 1675 84364 1.95 86039 49 1625 81859 1.95 83484 50 1701 79641 2.09 81342 51 1536 78685 1.91 80221 52 1513 76177 1.95 77690 53 1546 73590 2.06 75136 54 1409 72547 1.91 73956 55 1400 71209 1.93 72609 56 1404 68972 1.99 70376 57 1418 69264 2.01 70682 58 1304 65922 1.94 67226 59 1244 64587 1.89 65831 60 1234 63436 1.91 64670 61 1286 61141 2.06 62427 62 1168 59446 1.93 60614 63 1115 58049 1.88 59164 64 1139 56670 1.97 57809 65 1097 55152 1.95 56249 66 1044 53571 1.91 54615 67 1075 51932 2.03 53007 68 1057 50685 2.04 51742 69 1034 49408 2.05 50442 70 992 48698 2.00 49690 71 939 46921 1.96 47860 72 898 46192 1.91 47090 73 913 44667 2.00 45580 74 928 43371 2.09 44299 75 900 43014 2.05 43914 76 887 40294 2.15 41181 77 774 38718 1.96 39492 78 741 35683 2.03 36424 79 630 30548 2.02 31178 80 432 20361 2.08 20793 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 67643 816579 7.65 884222 2 52194 684912 7.08 737106 3 39086 647527 5.69 686613 4 32500 614284 5.02 646784 5 32694 585129 5.29 617823 6 34072 551638 5.82 585710 7 25503 543096 4.49 568599 8 24831 526955 4.50 551786 9 24759 526691 4.49 551450 10 23522 523019 4.30 546541 11 22586 502705 4.30 525291 12 20662 494064 4.01 514726 13 20440 492997 3.98 513437 14 19523 482530 3.89 502053 15 18745 480008 3.76 498753 16 17937 476413 3.63 494350 17 16922 462241 3.53 479163 18 16469 458666 3.47 475135 19 15970 450078 3.43 466048 20 14816 438060 3.27 452876 21 14550 431943 3.26 446493 22 14033 421591 3.22 435624 23 13371 414186 3.13 427557 24 12809 407124 3.05 419933 25 12470 400818 3.02 413288 26 12090 391941 2.99 404031 27 11823 387388 2.96 399211 28 11184 380981 2.85 392165 29 10565 371152 2.77 381717 30 10174 364901 2.71 375075 31 10111 365743 2.69 375854 32 9355 352474 2.59 361829 33 9279 344374 2.62 353653 34 8791 341442 2.51 350233 35 8512 334439 2.48 342951 36 8175 328631 2.43 336806 37 7962 323800 2.40 331762 38 7448 314533 2.31 321981 39 7260 307955 2.30 315215 40 7151 305221 2.29 312372 41 6853 296811 2.26 303664 42 6585 289467 2.22 296052 43 6473 284438 2.23 290911 44 6199 275012 2.20 281211 45 6044 267705 2.21 273749 46 5957 265510 2.19 271467 47 5616 259246 2.12 264862 48 5534 256530 2.11 262064 49 5436 251815 2.11 257251 50 5237 240032 2.14 245269 51 5155 235803 2.14 240958 52 5034 233951 2.11 238985 53 4875 222137 2.15 227012 54 4627 217041 2.09 221668 55 4714 213737 2.16 218451 56 4402 207682 2.08 212084 57 4474 206011 2.13 210485 58 4247 198705 2.09 202952 59 4110 195407 2.06 199517 60 3999 188597 2.08 192596 61 3939 185103 2.08 189042 62 3875 179477 2.11 183352 63 3885 175783 2.16 179668 64 3872 174234 2.17 178106 65 3598 166889 2.11 170487 66 3475 162430 2.09 165905 67 3486 160456 2.13 163942 68 3420 159139 2.10 162559 69 3710 153533 2.36 157243 70 3165 148896 2.08 152061 71 3054 144913 2.06 147967 72 3144 142619 2.16 145763 73 2956 137306 2.11 140262 74 3008 132575 2.22 135583 75 2853 128529 2.17 131382 76 2933 125514 2.28 128447 77 2612 119995 2.13 122607 78 2391 111120 2.11 113511 79 2062 97068 2.08 99130 80 1385 64846 2.09 66231