File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr2096_10_s1_R1_val_1_bismark_bt2_pe.bam	17448883	9281826	4524878	3642179	0	316818	8965008	162622349	15638125	6896551	966211	34775366	4177550	100168546
zr2096_1_s1_R1_val_1_bismark_bt2_pe.bam	28603346	8278707	17321475	3003163	1	997378	7281329	122946374	10628358	4571915	805514	24005486	6107440	76827661
zr2096_2_s1_R1_val_1_bismark_bt2_pe.bam	30325606	15252035	8686749	6386819	3	1117728	14134307	217997278	20383335	8344754	1296535	46571785	8176183	133224686
zr2096_3_s1_R1_val_1_bismark_bt2_pe.bam	29548753	15538530	7362629	6647592	2	715112	14823418	267931848	29379542	8888921	1510263	57703240	6547159	163902723
zr2096_4_s1_R1_val_1_bismark_bt2_pe.bam	23970516	12996064	5579671	5394779	2	325032	12671032	202475770	16985748	8754014	1073903	42816855	5852436	126992814
zr2096_5_s1_R1_val_1_bismark_bt2_pe.bam	31503281	16374536	8772637	6356103	5	829044	15545492	263444487	22048240	10747948	1493787	54023260	7597260	167533992
zr2096_6_s1_R1_val_1_bismark_bt2_pe.bam	23909493	13017035	5434131	5458326	1	359248	12657787	205757048	19512463	7211019	1104772	43358887	5789271	128780636
zr2096_7_s1_R1_val_1_bismark_bt2_pe.bam	29273635	15119730	8438168	5715730	7	495530	14624200	260501130	23425097	9264744	1553769	54582195	7063199	164612126
zr2096_8_s1_R1_val_1_bismark_bt2_pe.bam	29483218	14200446	9943091	5339670	11	740785	13459661	228973249	18167974	9175361	1363388	47696303	7335012	145235211
zr2096_9_s1_R1_val_1_bismark_bt2_pe.bam	31847541	16106009	9175850	6565677	5	2007999	14098010	255771617	26792812	8437259	1650306	54212225	7015080	157663935