CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 133152 29807 81.71 162959 2 140370 28064 83.34 168434 3 127753 27025 82.54 154778 4 126330 26750 82.53 153080 5 130402 26584 83.07 156986 6 129033 25943 83.26 154976 7 133563 29129 82.10 162692 8 131481 27142 82.89 158623 9 131192 26556 83.17 157748 10 137586 27494 83.35 165080 11 140159 27506 83.59 167665 12 137677 26296 83.96 163973 13 139118 27145 83.67 166263 14 137058 26326 83.89 163384 15 137581 26553 83.82 164134 16 139968 26718 83.97 166686 17 137897 26793 83.73 164690 18 137482 26766 83.70 164248 19 138659 27010 83.70 165669 20 139453 26947 83.81 166400 21 139087 26310 84.09 165397 22 139313 26493 84.02 165806 23 140238 26669 84.02 166907 24 139037 26162 84.16 165199 25 139731 26518 84.05 166249 26 139161 26493 84.01 165654 27 136365 25850 84.06 162215 28 138371 26619 83.87 164990 29 136624 26223 83.90 162847 30 134602 25592 84.02 160194 31 136133 26253 83.83 162386 32 135505 25522 84.15 161027 33 134358 25140 84.24 159498 34 134706 25876 83.89 160582 35 132699 25131 84.08 157830 36 130105 24547 84.13 154652 37 130489 25016 83.91 155505 38 129081 24796 83.89 153877 39 127502 24213 84.04 151715 40 127548 24368 83.96 151916 41 123939 24030 83.76 147969 42 121448 23002 84.08 144450 43 121296 23134 83.98 144430 44 120408 23060 83.93 143468 45 118422 22316 84.14 140738 46 117411 22891 83.68 140302 47 116440 22528 83.79 138968 48 113852 21802 83.93 135654 49 112643 22143 83.57 134786 50 110468 21579 83.66 132047 51 107564 20385 84.07 127949 52 106430 20726 83.70 127156 53 105077 20496 83.68 125573 54 103634 20256 83.65 123890 55 103351 20357 83.54 123708 56 101335 20083 83.46 121418 57 99441 19467 83.63 118908 58 98178 19363 83.53 117541 59 96949 18817 83.75 115766 60 93926 18616 83.46 112542 61 93190 18660 83.32 111850 62 90694 17727 83.65 108421 63 87518 17280 83.51 104798 64 86828 17293 83.39 104121 65 84733 17064 83.24 101797 66 81655 16222 83.43 97877 67 81304 16061 83.50 97365 68 79783 16003 83.29 95786 69 77284 15311 83.46 92595 70 75975 15574 82.99 91549 71 74577 14990 83.26 89567 72 71729 14856 82.84 86585 73 69816 14297 83.00 84113 74 68165 13781 83.18 81946 75 65451 13333 83.08 78784 76 63329 12833 83.15 76162 77 60275 12372 82.97 72647 78 54384 11296 82.80 65680 79 43457 8994 82.85 52451 80 19213 4105 82.40 23318 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 10091 243965 3.97 254056 2 5613 240960 2.28 246573 3 5026 250362 1.97 255388 4 4209 246708 1.68 250917 5 4889 249887 1.92 254776 6 4780 251851 1.86 256631 7 4199 254796 1.62 258995 8 4414 256851 1.69 261265 9 4171 257430 1.59 261601 10 4396 254265 1.70 258661 11 4203 250284 1.65 254487 12 4259 256233 1.63 260492 13 4207 251060 1.65 255267 14 4210 249415 1.66 253625 15 4205 258640 1.60 262845 16 4236 256330 1.63 260566 17 4285 254220 1.66 258505 18 4363 261451 1.64 265814 19 4261 257383 1.63 261644 20 4372 253622 1.69 257994 21 4350 258549 1.65 262899 22 4218 252204 1.64 256422 23 4390 253349 1.70 257739 24 4252 259740 1.61 263992 25 4171 254906 1.61 259077 26 4371 251856 1.71 256227 27 4313 257051 1.65 261364 28 4273 253092 1.66 257365 29 4247 252720 1.65 256967 30 4123 251542 1.61 255665 31 4113 249380 1.62 253493 32 4194 245878 1.68 250072 33 4109 249935 1.62 254044 34 3998 242569 1.62 246567 35 4058 240042 1.66 244100 36 4073 240825 1.66 244898 37 3973 234838 1.66 238811 38 3929 231974 1.67 235903 39 3764 235014 1.58 238778 40 3727 228490 1.60 232217 41 3779 224730 1.65 228509 42 3692 226568 1.60 230260 43 3637 222180 1.61 225817 44 3654 216803 1.66 220457 45 3537 219043 1.59 222580 46 3542 212710 1.64 216252 47 3516 209224 1.65 212740 48 3449 209737 1.62 213186 49 3356 203721 1.62 207077 50 3824 198490 1.89 202314 51 3354 201558 1.64 204912 52 3358 195174 1.69 198532 53 3212 191062 1.65 194274 54 3106 191889 1.59 194995 55 3004 187514 1.58 190518 56 3019 183756 1.62 186775 57 2991 185301 1.59 188292 58 2836 178842 1.56 181678 59 2966 175520 1.66 178486 60 2800 175810 1.57 178610 61 2786 169035 1.62 171821 62 2855 165615 1.69 168470 63 2695 165833 1.60 168528 64 2667 159034 1.65 161701 65 2682 155322 1.70 158004 66 2498 153476 1.60 155974 67 2416 149487 1.59 151903 68 2372 145723 1.60 148095 69 2355 144180 1.61 146535 70 2204 139730 1.55 141934 71 2290 135848 1.66 138138 72 2181 134446 1.60 136627 73 2143 129624 1.63 131767 74 2083 126232 1.62 128315 75 1987 124932 1.57 126919 76 1975 119236 1.63 121211 77 1874 110883 1.66 112757 78 1680 102495 1.61 104175 79 1281 80338 1.57 81619 80 577 35384 1.60 35961 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19232 706939 2.65 726171 2 17003 697267 2.38 714270 3 15147 710367 2.09 725514 4 14419 705191 2.00 719610 5 14579 701858 2.03 716437 6 13916 672866 2.03 686782 7 13064 676426 1.89 689490 8 12564 664336 1.86 676900 9 13096 667095 1.93 680191 10 13418 676668 1.94 690086 11 12874 656771 1.92 669645 12 12941 654244 1.94 667185 13 13035 667047 1.92 680082 14 12878 659067 1.92 671945 15 12812 667202 1.88 680014 16 12792 675529 1.86 688321 17 12933 662756 1.91 675689 18 12800 663979 1.89 676779 19 12919 670694 1.89 683613 20 12880 661214 1.91 674094 21 12955 660964 1.92 673919 22 12914 664863 1.91 677777 23 12691 662818 1.88 675509 24 12583 665714 1.86 678297 25 12420 669104 1.82 681524 26 11911 658786 1.78 670697 27 11773 656818 1.76 668591 28 11579 661562 1.72 673141 29 11721 647260 1.78 658981 30 11347 647941 1.72 659288 31 11490 658352 1.72 669842 32 11013 638796 1.69 649809 33 10786 635732 1.67 646518 34 10784 640079 1.66 650863 35 10550 629471 1.65 640021 36 10403 626564 1.63 636967 37 10317 625237 1.62 635554 38 10062 614403 1.61 624465 39 9932 610543 1.60 620475 40 9769 612201 1.57 621970 41 9721 601527 1.59 611248 42 9437 593676 1.56 603113 43 9398 594358 1.56 603756 44 9353 581848 1.58 591201 45 9285 575475 1.59 584760 46 9094 576015 1.55 585109 47 8916 567486 1.55 576402 48 9024 562127 1.58 571151 49 8759 562236 1.53 570995 50 9810 539310 1.79 549120 51 8540 535241 1.57 543781 52 8764 536864 1.61 545628 53 8110 517294 1.54 525404 54 7958 511145 1.53 519103 55 7997 508078 1.55 516075 56 7794 498895 1.54 506689 57 7562 492757 1.51 500319 58 7499 487706 1.51 495205 59 7531 480488 1.54 488019 60 7284 469364 1.53 476648 61 7214 463084 1.53 470298 62 7050 452065 1.54 459115 63 6885 445030 1.52 451915 64 6787 442816 1.51 449603 65 6711 428631 1.54 435342 66 6345 418110 1.49 424455 67 6576 413873 1.56 420449 68 6392 407775 1.54 414167 69 6190 399084 1.53 405274 70 5933 390396 1.50 396329 71 5759 379757 1.49 385516 72 5707 372445 1.51 378152 73 5636 360508 1.54 366144 74 5401 349988 1.52 355389 75 5251 340276 1.52 345527 76 5163 330402 1.54 335565 77 4779 312076 1.51 316855 78 4450 285297 1.54 289747 79 3589 227835 1.55 231424 80 1568 98103 1.57 99671 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 81455 20574 79.84 102029 2 64532 14476 81.68 79008 3 57203 12988 81.50 70191 4 51588 11884 81.28 63472 5 51037 11594 81.49 62631 6 48954 10947 81.72 59901 7 49679 12335 80.11 62014 8 47534 10548 81.84 58082 9 45794 10242 81.72 56036 10 46443 10057 82.20 56500 11 45922 10073 82.01 55995 12 44035 9416 82.38 53451 13 43985 9109 82.84 53094 14 42184 9080 82.29 51264 15 42299 8673 82.98 50972 16 40927 8454 82.88 49381 17 39474 8340 82.56 47814 18 37792 7802 82.89 45594 19 36752 7671 82.73 44423 20 35803 7616 82.46 43419 21 34889 7462 82.38 42351 22 33961 6961 82.99 40922 23 33252 6905 82.80 40157 24 32361 6664 82.92 39025 25 32051 6710 82.69 38761 26 30472 6451 82.53 36923 27 29356 6265 82.41 35621 28 28938 5850 83.18 34788 29 27771 5932 82.40 33703 30 26630 5443 83.03 32073 31 26515 5683 82.35 32198 32 25745 5350 82.79 31095 33 24923 5171 82.82 30094 34 24409 5161 82.55 29570 35 23660 4932 82.75 28592 36 22364 4768 82.43 27132 37 22044 4577 82.81 26621 38 21468 4470 82.77 25938 39 20918 4480 82.36 25398 40 20715 4367 82.59 25082 41 19407 4181 82.27 23588 42 18607 3905 82.65 22512 43 18049 3810 82.57 21859 44 17875 3767 82.59 21642 45 17240 3628 82.61 20868 46 16736 3609 82.26 20345 47 16347 3609 81.92 19956 48 15622 3335 82.41 18957 49 15087 3286 82.12 18373 50 14755 3097 82.65 17852 51 14158 3006 82.49 17164 52 13531 2856 82.57 16387 53 13172 2914 81.88 16086 54 12809 2906 81.51 15715 55 12827 2754 82.32 15581 56 11984 2706 81.58 14690 57 12276 2598 82.53 14874 58 11393 2530 81.83 13923 59 10917 2409 81.92 13326 60 10580 2314 82.05 12894 61 10282 2272 81.90 12554 62 9964 2353 80.90 12317 63 9681 2191 81.54 11872 64 9313 2090 81.67 11403 65 8966 2023 81.59 10989 66 8641 2018 81.07 10659 67 8575 1901 81.85 10476 68 8123 1922 80.87 10045 69 7902 1824 81.25 9726 70 7748 1846 80.76 9594 71 7431 1775 80.72 9206 72 7157 1738 80.46 8895 73 7061 1639 81.16 8700 74 6656 1570 80.91 8226 75 6299 1588 79.87 7887 76 6102 1401 81.33 7503 77 5703 1395 80.35 7098 78 5341 1287 80.58 6628 79 4613 1160 79.91 5773 80 3126 793 79.77 3919 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5846 163327 3.46 169173 2 2761 122816 2.20 125577 3 2586 116545 2.17 119131 4 1890 106013 1.75 107903 5 2102 100922 2.04 103024 6 2123 98821 2.10 100944 7 1663 97229 1.68 98892 8 1732 97399 1.75 99131 9 1433 92289 1.53 93722 10 1419 89484 1.56 90903 11 1378 86180 1.57 87558 12 1401 85965 1.60 87366 13 1292 81341 1.56 82633 14 1223 80019 1.51 81242 15 1319 80222 1.62 81541 16 1237 76957 1.58 78194 17 1192 73618 1.59 74810 18 1214 73307 1.63 74521 19 1167 69766 1.65 70933 20 1059 67789 1.54 68848 21 1112 67165 1.63 68277 22 1139 63650 1.76 64789 23 1046 62661 1.64 63707 24 1049 61757 1.67 62806 25 946 58899 1.58 59845 26 998 56626 1.73 57624 27 965 57112 1.66 58077 28 862 54243 1.56 55105 29 902 53669 1.65 54571 30 821 51019 1.58 51840 31 736 50424 1.44 51160 32 794 48901 1.60 49695 33 748 48094 1.53 48842 34 779 45013 1.70 45792 35 759 44157 1.69 44916 36 737 43275 1.67 44012 37 691 40781 1.67 41472 38 665 40304 1.62 40969 39 634 39746 1.57 40380 40 576 38218 1.48 38794 41 626 37261 1.65 37887 42 583 36094 1.59 36677 43 556 34546 1.58 35102 44 569 33317 1.68 33886 45 569 33100 1.69 33669 46 521 31826 1.61 32347 47 534 30876 1.70 31410 48 504 29752 1.67 30256 49 500 28813 1.71 29313 50 472 27836 1.67 28308 51 470 27536 1.68 28006 52 395 26364 1.48 26759 53 461 25095 1.80 25556 54 400 25150 1.57 25550 55 410 24071 1.67 24481 56 386 23510 1.62 23896 57 362 23372 1.53 23734 58 369 21707 1.67 22076 59 318 21168 1.48 21486 60 326 20817 1.54 21143 61 317 19830 1.57 20147 62 301 19571 1.51 19872 63 321 18967 1.66 19288 64 269 18139 1.46 18408 65 251 17550 1.41 17801 66 249 17346 1.42 17595 67 268 16240 1.62 16508 68 288 16178 1.75 16466 69 279 15522 1.77 15801 70 232 15200 1.50 15432 71 240 14568 1.62 14808 72 213 14116 1.49 14329 73 208 13705 1.50 13913 74 262 13214 1.94 13476 75 228 13049 1.72 13277 76 190 12418 1.51 12608 77 188 11578 1.60 11766 78 153 10770 1.40 10923 79 181 9135 1.94 9316 80 97 6139 1.56 6236 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12506 506047 2.41 518553 2 8451 372080 2.22 380531 3 6551 343810 1.87 350361 4 5568 316865 1.73 322433 5 5713 301424 1.86 307137 6 5403 281764 1.88 287167 7 4302 276235 1.53 280537 8 4064 266489 1.50 270553 9 4111 263468 1.54 267579 10 3870 259695 1.47 263565 11 3773 244279 1.52 248052 12 3673 237995 1.52 241668 13 3460 234594 1.45 238054 14 3388 225047 1.48 228435 15 3417 222425 1.51 225842 16 3415 218391 1.54 221806 17 3275 209691 1.54 212966 18 3215 205637 1.54 208852 19 3079 201231 1.51 204310 20 2991 192967 1.53 195958 21 2961 189680 1.54 192641 22 2843 183225 1.53 186068 23 2768 178700 1.53 181468 24 2691 173740 1.53 176431 25 2660 170173 1.54 172833 26 2571 163872 1.54 166443 27 2484 160149 1.53 162633 28 2360 157521 1.48 159881 29 2384 150402 1.56 152786 30 2300 147338 1.54 149638 31 2375 147081 1.59 149456 32 2188 138719 1.55 140907 33 2110 135259 1.54 137369 34 2069 132696 1.54 134765 35 2123 128920 1.62 131043 36 1881 125372 1.48 127253 37 1882 122063 1.52 123945 38 1800 118867 1.49 120667 39 1786 115471 1.52 117257 40 1793 113626 1.55 115419 41 1691 109269 1.52 110960 42 1636 105727 1.52 107363 43 1595 104211 1.51 105806 44 1508 99902 1.49 101410 45 1475 96146 1.51 97621 46 1459 95709 1.50 97168 47 1443 92808 1.53 94251 48 1388 92095 1.48 93483 49 1416 90389 1.54 91805 50 1336 84003 1.57 85339 51 1279 82181 1.53 83460 52 1263 82568 1.51 83831 53 1243 76970 1.59 78213 54 1141 74328 1.51 75469 55 1158 73289 1.56 74447 56 1034 70962 1.44 71996 57 1159 70327 1.62 71486 58 1053 67386 1.54 68439 59 1045 66659 1.54 67704 60 985 63728 1.52 64713 61 930 61337 1.49 62267 62 920 59072 1.53 59992 63 878 57906 1.49 58784 64 852 57994 1.45 58846 65 817 54673 1.47 55490 66 816 52520 1.53 53336 67 757 51644 1.44 52401 68 797 51526 1.52 52323 69 815 49991 1.60 50806 70 694 47539 1.44 48233 71 741 46252 1.58 46993 72 689 45467 1.49 46156 73 668 43237 1.52 43905 74 745 41227 1.77 41972 75 606 40129 1.49 40735 76 674 38539 1.72 39213 77 520 36726 1.40 37246 78 538 34209 1.55 34747 79 446 30215 1.45 30661 80 310 20073 1.52 20383