CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 86800 33201 72.33 120001 2 93906 32215 74.46 126121 3 87930 31844 73.41 119774 4 87409 31542 73.48 118951 5 88730 31448 73.83 120178 6 88384 31544 73.70 119928 7 92167 33810 73.16 125977 8 90388 32057 73.82 122445 9 89364 31378 74.01 120742 10 92596 32229 74.18 124825 11 93965 32266 74.44 126231 12 93211 31952 74.47 125163 13 93477 31852 74.59 125329 14 93488 32487 74.21 125975 15 93701 31845 74.63 125546 16 94468 31967 74.72 126435 17 93494 32090 74.45 125584 18 93362 31425 74.82 124787 19 93811 32220 74.43 126031 20 93323 32303 74.29 125626 21 94242 32035 74.63 126277 22 93652 31793 74.66 125445 23 94001 31725 74.77 125726 24 93385 31604 74.71 124989 25 94979 31985 74.81 126964 26 94139 31793 74.75 125932 27 93039 31012 75.00 124051 28 93375 31143 74.99 124518 29 92390 31322 74.68 123712 30 91471 31046 74.66 122517 31 92733 31443 74.68 124176 32 92042 31167 74.70 123209 33 90778 30289 74.98 121067 34 92092 30783 74.95 122875 35 90134 30376 74.79 120510 36 88880 29107 75.33 117987 37 89363 29787 75.00 119150 38 88697 29517 75.03 118214 39 87652 29091 75.08 116743 40 87085 29394 74.76 116479 41 85611 28585 74.97 114196 42 83820 27784 75.10 111604 43 83336 27742 75.02 111078 44 82348 27801 74.76 110149 45 81235 27129 74.96 108364 46 81562 27309 74.92 108871 47 80466 27238 74.71 107704 48 78584 26255 74.96 104839 49 77948 26361 74.73 104309 50 76718 26230 74.52 102948 51 74578 25357 74.63 99935 52 74039 24873 74.85 98912 53 73157 24808 74.68 97965 54 72433 24701 74.57 97134 55 72427 24133 75.01 96560 56 71440 24101 74.77 95541 57 70341 23888 74.65 94229 58 68766 23424 74.59 92190 59 67210 23421 74.16 90631 60 66012 22779 74.35 88791 61 64989 22425 74.35 87414 62 63655 21904 74.40 85559 63 62568 21099 74.78 83667 64 61399 20952 74.56 82351 65 60122 20519 74.56 80641 66 58681 20054 74.53 78735 67 57875 20088 74.23 77963 68 56911 19520 74.46 76431 69 54847 18882 74.39 73729 70 54524 18962 74.20 73486 71 53295 18908 73.81 72203 72 51820 18203 74.00 70023 73 50675 17966 73.83 68641 74 49372 17649 73.67 67021 75 47579 16332 74.45 63911 76 46380 16052 74.29 62432 77 44303 15171 74.49 59474 78 40658 14286 74.00 54944 79 33274 11695 73.99 44969 80 15872 5728 73.48 21600 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7638 210816 3.50 218454 2 4475 214102 2.05 218577 3 4173 220982 1.85 225155 4 3445 217433 1.56 220878 5 3990 215881 1.81 219871 6 3888 221276 1.73 225164 7 3503 220906 1.56 224409 8 3544 226251 1.54 229795 9 3299 222655 1.46 225954 10 3299 222402 1.46 225701 11 3443 220268 1.54 223711 12 3459 222724 1.53 226183 13 3731 218904 1.68 222635 14 3376 219892 1.51 223268 15 3510 225612 1.53 229122 16 3464 222910 1.53 226374 17 3441 220772 1.53 224213 18 3518 225222 1.54 228740 19 3563 222716 1.57 226279 20 3436 221801 1.53 225237 21 3498 225031 1.53 228529 22 3424 221116 1.52 224540 23 3467 221792 1.54 225259 24 3760 225507 1.64 229267 25 3496 220672 1.56 224168 26 3577 220207 1.60 223784 27 3571 223678 1.57 227249 28 3401 220834 1.52 224235 29 3490 220072 1.56 223562 30 3299 218437 1.49 221736 31 3461 218032 1.56 221493 32 3375 216408 1.54 219783 33 3551 217719 1.60 221270 34 3456 211505 1.61 214961 35 3371 210783 1.57 214154 36 3252 210571 1.52 213823 37 3191 206076 1.52 209267 38 3225 204089 1.56 207314 39 3224 205837 1.54 209061 40 3177 202507 1.54 205684 41 3228 199716 1.59 202944 42 3193 200186 1.57 203379 43 2923 196512 1.47 199435 44 2976 191553 1.53 194529 45 2943 194211 1.49 197154 46 3014 188776 1.57 191790 47 3140 186495 1.66 189635 48 2998 185161 1.59 188159 49 2793 182060 1.51 184853 50 2887 179108 1.59 181995 51 2974 180239 1.62 183213 52 2774 174580 1.56 177354 53 2693 171976 1.54 174669 54 2588 172068 1.48 174656 55 2507 167849 1.47 170356 56 2699 166231 1.60 168930 57 2567 166164 1.52 168731 58 2483 161132 1.52 163615 59 2628 158116 1.63 160744 60 2408 158642 1.50 161050 61 2321 153132 1.49 155453 62 2367 150036 1.55 152403 63 2338 149772 1.54 152110 64 2225 144771 1.51 146996 65 2217 142246 1.53 144463 66 2206 139579 1.56 141785 67 2117 136570 1.53 138687 68 2045 133892 1.50 135937 69 2081 132051 1.55 134132 70 1942 127723 1.50 129665 71 2037 125830 1.59 127867 72 1836 123077 1.47 124913 73 1865 119931 1.53 121796 74 1796 116689 1.52 118485 75 1857 115777 1.58 117634 76 1790 110415 1.60 112205 77 1667 105218 1.56 106885 78 1542 98500 1.54 100042 79 1236 79281 1.54 80517 80 633 37461 1.66 38094 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 17617 633057 2.71 650674 2 15730 630474 2.43 646204 3 14369 640047 2.20 654416 4 13306 638695 2.04 652001 5 13160 626797 2.06 639957 6 12765 610998 2.05 623763 7 12339 611091 1.98 623430 8 11621 602390 1.89 614011 9 11953 607305 1.93 619258 10 12077 610890 1.94 622967 11 11683 593715 1.93 605398 12 11955 593790 1.97 605745 13 12504 598212 2.05 610716 14 11636 593110 1.92 604746 15 11961 599032 1.96 610993 16 12350 603217 2.01 615567 17 11817 597793 1.94 609610 18 11850 601368 1.93 613218 19 12411 605262 2.01 617673 20 12009 598026 1.97 610035 21 12031 600508 1.96 612539 22 12032 599261 1.97 611293 23 11810 598873 1.93 610683 24 12137 597871 1.99 610008 25 11568 601224 1.89 612792 26 11389 594458 1.88 605847 27 11348 594427 1.87 605775 28 10868 596535 1.79 607403 29 10879 586637 1.82 597516 30 10607 586201 1.78 596808 31 10745 596812 1.77 607557 32 10307 580694 1.74 591001 33 10651 577301 1.81 587952 34 10660 580207 1.80 590867 35 10044 576518 1.71 586562 36 9829 572306 1.69 582135 37 9924 571957 1.71 581881 38 9536 563655 1.66 573191 39 9382 562683 1.64 572065 40 9461 561489 1.66 570950 41 9216 553962 1.64 563178 42 9026 548945 1.62 557971 43 8990 547924 1.61 556914 44 8838 535748 1.62 544586 45 8678 529579 1.61 538257 46 8454 530544 1.57 538998 47 8778 522525 1.65 531303 48 8428 523049 1.59 531477 49 8534 521160 1.61 529694 50 8007 503001 1.57 511008 51 8364 495743 1.66 504107 52 7896 498968 1.56 506864 53 7783 482142 1.59 489925 54 7646 475355 1.58 483001 55 7560 473278 1.57 480838 56 7290 464473 1.55 471763 57 7487 463296 1.59 470783 58 7252 455383 1.57 462635 59 7790 450186 1.70 457976 60 7012 442708 1.56 449720 61 6904 433778 1.57 440682 62 7154 424377 1.66 431531 63 6721 420122 1.57 426843 64 6727 418377 1.58 425104 65 6260 404596 1.52 410856 66 6274 396879 1.56 403153 67 6195 391131 1.56 397326 68 6159 386797 1.57 392956 69 6088 379344 1.58 385432 70 5760 370620 1.53 376380 71 6099 361286 1.66 367385 72 5636 356395 1.56 362031 73 5528 344724 1.58 350252 74 5170 334181 1.52 339351 75 5468 325557 1.65 331025 76 5197 318354 1.61 323551 77 4694 302871 1.53 307565 78 4438 282525 1.55 286963 79 3641 230530 1.55 234171 80 1702 106897 1.57 108599 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 54725 23144 70.28 77869 2 46975 17727 72.60 64702 3 42257 15853 72.72 58110 4 37893 14899 71.78 52792 5 37184 14292 72.24 51476 6 36344 13910 72.32 50254 7 37061 14766 71.51 51827 8 35687 13491 72.57 49178 9 34439 12847 72.83 47286 10 34404 13028 72.53 47432 11 34436 12811 72.89 47247 12 33127 12322 72.89 45449 13 32652 11816 73.43 44468 14 31782 11582 73.29 43364 15 31482 11231 73.71 42713 16 30761 11159 73.38 41920 17 29738 10847 73.27 40585 18 28662 10249 73.66 38911 19 27665 10372 72.73 38037 20 26882 9709 73.47 36591 21 26435 9641 73.28 36076 22 26040 9230 73.83 35270 23 25036 9078 73.39 34114 24 24552 8661 73.92 33213 25 24519 8613 74.00 33132 26 23212 8548 73.09 31760 27 22482 7938 73.91 30420 28 22103 8005 73.41 30108 29 21366 7745 73.39 29111 30 20607 7202 74.10 27809 31 20459 7497 73.18 27956 32 19804 7115 73.57 26919 33 19492 6925 73.79 26417 34 19541 6922 73.84 26463 35 18480 6618 73.63 25098 36 17666 6251 73.86 23917 37 17317 6129 73.86 23446 38 16766 5878 74.04 22644 39 16511 5916 73.62 22427 40 16169 5908 73.24 22077 41 15274 5619 73.11 20893 42 14930 5388 73.48 20318 43 14385 5113 73.78 19498 44 13975 5102 73.26 19077 45 13887 5033 73.40 18920 46 13551 4893 73.47 18444 47 13171 4826 73.18 17997 48 12591 4674 72.93 17265 49 12208 4499 73.07 16707 50 11982 4449 72.92 16431 51 11382 4080 73.61 15462 52 11275 4116 73.26 15391 53 10872 4069 72.77 14941 54 10494 3822 73.30 14316 55 10517 3910 72.90 14427 56 10255 3774 73.10 14029 57 10032 3731 72.89 13763 58 9729 3435 73.91 13164 59 9334 3491 72.78 12825 60 8850 3293 72.88 12143 61 8851 3318 72.73 12169 62 8330 3151 72.55 11481 63 8192 3022 73.05 11214 64 8045 2942 73.22 10987 65 7824 3011 72.21 10835 66 7659 2792 73.28 10451 67 7250 2774 72.33 10024 68 7130 2608 73.22 9738 69 6841 2641 72.15 9482 70 6774 2661 71.80 9435 71 6569 2571 71.87 9140 72 6318 2425 72.26 8743 73 6079 2423 71.50 8502 74 6041 2412 71.47 8453 75 5842 2153 73.07 7995 76 5652 2145 72.49 7797 77 5303 2116 71.48 7419 78 4938 1977 71.41 6915 79 4224 1688 71.45 5912 80 2763 1197 69.77 3960 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4724 144033 3.18 148757 2 2588 114159 2.22 116747 3 2398 107434 2.18 109832 4 1748 99665 1.72 101413 5 1971 94854 2.04 96825 6 2021 94058 2.10 96079 7 1525 92194 1.63 93719 8 1556 92794 1.65 94350 9 1293 87469 1.46 88762 10 1267 85340 1.46 86607 11 1315 82496 1.57 83811 12 1214 81671 1.46 82885 13 1168 78267 1.47 79435 14 1185 76589 1.52 77774 15 1130 76281 1.46 77411 16 1155 73804 1.54 74959 17 1088 70759 1.51 71847 18 1032 69729 1.46 70761 19 1037 67399 1.52 68436 20 988 65028 1.50 66016 21 997 64279 1.53 65276 22 980 61242 1.58 62222 23 919 60697 1.49 61616 24 905 59810 1.49 60715 25 875 57195 1.51 58070 26 808 55831 1.43 56639 27 868 55762 1.53 56630 28 822 53099 1.52 53921 29 823 51885 1.56 52708 30 821 50584 1.60 51405 31 794 48907 1.60 49701 32 743 47742 1.53 48485 33 758 47194 1.58 47952 34 699 45006 1.53 45705 35 690 43659 1.56 44349 36 640 42398 1.49 43038 37 664 40589 1.61 41253 38 630 40083 1.55 40713 39 598 39723 1.48 40321 40 585 38218 1.51 38803 41 557 37508 1.46 38065 42 563 36374 1.52 36937 43 528 34963 1.49 35491 44 489 33702 1.43 34191 45 466 33522 1.37 33988 46 457 32462 1.39 32919 47 460 31719 1.43 32179 48 445 30450 1.44 30895 49 453 29645 1.51 30098 50 443 28474 1.53 28917 51 437 28063 1.53 28500 52 408 27440 1.47 27848 53 392 26521 1.46 26913 54 409 26024 1.55 26433 55 389 24802 1.54 25191 56 381 24313 1.54 24694 57 394 24514 1.58 24908 58 321 23000 1.38 23321 59 359 22371 1.58 22730 60 330 22073 1.47 22403 61 369 21123 1.72 21492 62 272 20656 1.30 20928 63 298 20194 1.45 20492 64 261 19847 1.30 20108 65 271 19183 1.39 19454 66 335 18630 1.77 18965 67 245 18059 1.34 18304 68 256 17798 1.42 18054 69 260 17183 1.49 17443 70 296 16531 1.76 16827 71 284 16113 1.73 16397 72 214 15534 1.36 15748 73 241 15269 1.55 15510 74 201 14948 1.33 15149 75 244 14543 1.65 14787 76 194 13794 1.39 13988 77 189 13238 1.41 13427 78 177 12376 1.41 12553 79 174 10684 1.60 10858 80 126 6984 1.77 7110 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12191 450819 2.63 463010 2 8515 345811 2.40 354326 3 6316 321968 1.92 328284 4 5493 300408 1.80 305901 5 5312 286331 1.82 291643 6 5413 270344 1.96 275757 7 4320 264020 1.61 268340 8 4015 257062 1.54 261077 9 3952 253886 1.53 257838 10 3838 248493 1.52 252331 11 3589 235077 1.50 238666 12 3487 229536 1.50 233023 13 3383 225836 1.48 229219 14 3293 218803 1.48 222096 15 3335 216082 1.52 219417 16 3185 211425 1.48 214610 17 3040 205008 1.46 208048 18 3063 200776 1.50 203839 19 3005 195642 1.51 198647 20 2966 189023 1.54 191989 21 2811 185907 1.49 188718 22 2748 179179 1.51 181927 23 2809 176371 1.57 179180 24 2747 171403 1.58 174150 25 2607 168685 1.52 171292 26 2623 163041 1.58 165664 27 2545 158884 1.58 161429 28 2357 156143 1.49 158500 29 2361 151506 1.53 153867 30 2269 147406 1.52 149675 31 2407 147790 1.60 150197 32 2126 140402 1.49 142528 33 2258 136060 1.63 138318 34 2029 134472 1.49 136501 35 2025 131407 1.52 133432 36 1988 127196 1.54 129184 37 2052 125739 1.61 127791 38 1892 122106 1.53 123998 39 1835 118888 1.52 120723 40 1830 117214 1.54 119044 41 1743 113742 1.51 115485 42 1656 111297 1.47 112953 43 1665 108525 1.51 110190 44 1698 104257 1.60 105955 45 1607 101404 1.56 103011 46 1547 101222 1.51 102769 47 1484 98178 1.49 99662 48 1527 97053 1.55 98580 49 1539 95639 1.58 97178 50 1407 90426 1.53 91833 51 1378 88144 1.54 89522 52 1333 87850 1.49 89183 53 1313 82800 1.56 84113 54 1259 80618 1.54 81877 55 1252 79664 1.55 80916 56 1232 77237 1.57 78469 57 1331 76189 1.72 77520 58 1127 73307 1.51 74434 59 1139 73151 1.53 74290 60 1099 70081 1.54 71180 61 1100 67567 1.60 68667 62 1049 66509 1.55 67558 63 1019 64640 1.55 65659 64 1009 64655 1.54 65664 65 930 61096 1.50 62026 66 929 58964 1.55 59893 67 913 58277 1.54 59190 68 904 58197 1.53 59101 69 932 56436 1.62 57368 70 857 54261 1.55 55118 71 895 52929 1.66 53824 72 795 52186 1.50 52981 73 815 49826 1.61 50641 74 696 48130 1.43 48826 75 750 46503 1.59 47253 76 719 45403 1.56 46122 77 673 43466 1.52 44139 78 639 40497 1.55 41136 79 594 36269 1.61 36863 80 379 24551 1.52 24930