CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 106556 31544 77.16 138100 2 116337 30268 79.35 146605 3 108447 29603 78.56 138050 4 107372 29185 78.63 136557 5 108472 29008 78.90 137480 6 109051 29294 78.83 138345 7 112762 31207 78.32 143969 8 111149 29605 78.97 140754 9 109565 28490 79.36 138055 10 113510 29535 79.35 143045 11 115472 30117 79.31 145589 12 114255 29282 79.60 143537 13 115609 29143 79.87 144752 14 115129 29646 79.52 144775 15 115166 29258 79.74 144424 16 115995 29379 79.79 145374 17 116036 29624 79.66 145660 18 114243 29070 79.72 143313 19 115704 29171 79.86 144875 20 114833 29100 79.78 143933 21 115274 29127 79.83 144401 22 115711 28780 80.08 144491 23 116830 28805 80.22 145635 24 114625 28437 80.12 143062 25 116491 29033 80.05 145524 26 115288 28779 80.02 144067 27 114103 28554 79.98 142657 28 114597 28662 79.99 143259 29 113699 28585 79.91 142284 30 112658 28062 80.06 140720 31 114884 28849 79.93 143733 32 112652 28351 79.89 141003 33 111815 27853 80.06 139668 34 112934 27894 80.19 140828 35 111626 27714 80.11 139340 36 109248 26798 80.30 136046 37 109815 27615 79.91 137430 38 109538 27641 79.85 137179 39 108796 27028 80.10 135824 40 108527 27123 80.01 135650 41 106404 26376 80.14 132780 42 103873 25669 80.18 129542 43 104810 25473 80.45 130283 44 103136 25609 80.11 128745 45 101298 24902 80.27 126200 46 101223 25283 80.01 126506 47 100404 25320 79.86 125724 48 97941 24469 80.01 122410 49 97717 24595 79.89 122312 50 96679 24443 79.82 121122 51 93633 23695 79.80 117328 52 93792 23127 80.22 116919 53 92192 23220 79.88 115412 54 92066 22838 80.12 114904 55 91448 22796 80.05 114244 56 90476 23025 79.71 113501 57 89397 22444 79.93 111841 58 86712 21735 79.96 108447 59 85100 21850 79.57 106950 60 83827 21061 79.92 104888 61 83017 21230 79.63 104247 62 81348 20544 79.84 101892 63 79084 19953 79.85 99037 64 78643 19820 79.87 98463 65 77180 19465 79.86 96645 66 74640 19218 79.52 93858 67 74315 18699 79.90 93014 68 72803 18649 79.61 91452 69 71145 18163 79.66 89308 70 70282 18192 79.44 88474 71 69047 17868 79.44 86915 72 67122 17300 79.51 84422 73 65645 17001 79.43 82646 74 63157 16429 79.36 79586 75 61445 15809 79.54 77254 76 60134 15217 79.81 75351 77 57354 14772 79.52 72126 78 52450 13811 79.16 66261 79 42781 11132 79.35 53913 80 19722 5292 78.84 25014 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8760 232328 3.63 241088 2 5082 236366 2.10 241448 3 4728 243890 1.90 248618 4 4001 240583 1.64 244584 5 4463 238937 1.83 243400 6 4394 243792 1.77 248186 7 4077 245128 1.64 249205 8 4153 247171 1.65 251324 9 3795 244537 1.53 248332 10 3927 243420 1.59 247347 11 3856 241974 1.57 245830 12 3913 245263 1.57 249176 13 4021 239902 1.65 243923 14 3927 241283 1.60 245210 15 3929 248054 1.56 251983 16 3906 245180 1.57 249086 17 3904 241911 1.59 245815 18 3862 249086 1.53 252948 19 3895 244345 1.57 248240 20 3885 242784 1.57 246669 21 3967 246165 1.59 250132 22 3697 243651 1.49 247348 23 4051 243869 1.63 247920 24 4094 246497 1.63 250591 25 3860 243393 1.56 247253 26 3946 240966 1.61 244912 27 3876 245672 1.55 249548 28 3969 241955 1.61 245924 29 3888 242233 1.58 246121 30 3744 240414 1.53 244158 31 3825 240340 1.57 244165 32 3838 238337 1.58 242175 33 3950 239978 1.62 243928 34 3903 234053 1.64 237956 35 3719 231594 1.58 235313 36 3681 232444 1.56 236125 37 3717 227521 1.61 231238 38 3655 225910 1.59 229565 39 3497 228662 1.51 232159 40 3573 223973 1.57 227546 41 3466 221510 1.54 224976 42 3439 221575 1.53 225014 43 3401 217967 1.54 221368 44 3383 214364 1.55 217747 45 3283 215391 1.50 218674 46 3276 211143 1.53 214419 47 3430 208655 1.62 212085 48 3368 206670 1.60 210038 49 3213 202973 1.56 206186 50 3150 200125 1.55 203275 51 3300 201358 1.61 204658 52 3140 196318 1.57 199458 53 3030 192863 1.55 195893 54 3039 192979 1.55 196018 55 2999 190477 1.55 193476 56 2993 186421 1.58 189414 57 2829 187428 1.49 190257 58 2970 182674 1.60 185644 59 2894 178940 1.59 181834 60 2912 179703 1.59 182615 61 2721 173338 1.55 176059 62 2884 169732 1.67 172616 63 2687 170212 1.55 172899 64 2603 164632 1.56 167235 65 2565 161547 1.56 164112 66 2547 159695 1.57 162242 67 2448 155185 1.55 157633 68 2408 152298 1.56 154706 69 2353 150180 1.54 152533 70 2297 146590 1.54 148887 71 2494 142903 1.72 145397 72 2138 141717 1.49 143855 73 2056 137177 1.48 139233 74 2128 134664 1.56 136792 75 2186 132633 1.62 134819 76 2009 127053 1.56 129062 77 1972 121114 1.60 123086 78 1778 113003 1.55 114781 79 1441 90271 1.57 91712 80 670 41487 1.59 42157 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 18657 695219 2.61 713876 2 16576 688910 2.35 705486 3 15040 699691 2.10 714731 4 13994 699180 1.96 713174 5 13616 685660 1.95 699276 6 13302 664176 1.96 677478 7 12486 666516 1.84 679002 8 12137 658777 1.81 670914 9 12292 662985 1.82 675277 10 12385 669965 1.82 682350 11 12362 650821 1.86 663183 12 12179 649162 1.84 661341 13 12881 656386 1.92 669267 14 12152 647506 1.84 659658 15 12253 656009 1.83 668262 16 12590 661457 1.87 674047 17 12187 655123 1.83 667310 18 12247 656930 1.83 669177 19 12456 664688 1.84 677144 20 12288 656545 1.84 668833 21 12486 658541 1.86 671027 22 12249 656552 1.83 668801 23 12099 656708 1.81 668807 24 12638 655807 1.89 668445 25 12115 661482 1.80 673597 26 12076 653117 1.82 665193 27 11673 653748 1.75 665421 28 11508 656676 1.72 668184 29 11511 646569 1.75 658080 30 11154 644375 1.70 655529 31 11322 658607 1.69 669929 32 10973 640656 1.68 651629 33 11398 636162 1.76 647560 34 11561 641204 1.77 652765 35 10647 637178 1.64 647825 36 10442 633192 1.62 643634 37 10291 633641 1.60 643932 38 10153 625507 1.60 635660 39 9881 622474 1.56 632355 40 9934 624695 1.57 634629 41 9758 617396 1.56 627154 42 9786 608747 1.58 618533 43 9518 609204 1.54 618722 44 9366 595894 1.55 605260 45 9321 591733 1.55 601054 46 9512 593548 1.58 603060 47 9394 584652 1.58 594046 48 9181 583573 1.55 592754 49 8884 582217 1.50 591101 50 8677 563389 1.52 572066 51 9056 554966 1.61 564022 52 8752 559191 1.54 567943 53 8463 540304 1.54 548767 54 8248 534833 1.52 543081 55 8250 532676 1.53 540926 56 8229 522719 1.55 530948 57 8093 520039 1.53 528132 58 7952 512059 1.53 520011 59 8374 506047 1.63 514421 60 7717 499304 1.52 507021 61 7684 490180 1.54 497864 62 7708 479266 1.58 486974 63 7314 475359 1.52 482673 64 7282 474618 1.51 481900 65 7283 458764 1.56 466047 66 6771 449998 1.48 456769 67 6995 445880 1.54 452875 68 6782 441184 1.51 447966 69 6515 431401 1.49 437916 70 6304 422142 1.47 428446 71 6650 413262 1.58 419912 72 6272 405156 1.52 411428 73 5982 394227 1.49 400209 74 5668 383054 1.46 388722 75 6104 372019 1.61 378123 76 5843 363300 1.58 369143 77 5375 346841 1.53 352216 78 4926 321151 1.51 326077 79 4095 262290 1.54 266385 80 1853 117234 1.56 119087 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 69841 22336 75.77 92177 2 60805 17047 78.10 77852 3 54806 15550 77.90 70356 4 50449 14389 77.81 64838 5 48975 13865 77.94 62840 6 48145 13647 77.91 61792 7 48608 14561 76.95 63169 8 46790 12979 78.28 59769 9 45300 12619 78.21 57919 10 45414 12669 78.19 58083 11 45619 12348 78.70 57967 12 43556 12126 78.22 55682 13 43112 11549 78.87 54661 14 42279 11515 78.59 53794 15 41789 10907 79.30 52696 16 40755 10820 79.02 51575 17 39135 10672 78.57 49807 18 37721 10102 78.88 47823 19 36640 9894 78.74 46534 20 35944 9556 79.00 45500 21 34945 9384 78.83 44329 22 34083 9136 78.86 43219 23 33661 8921 79.05 42582 24 32953 8647 79.21 41600 25 32570 8618 79.08 41188 26 31116 8239 79.06 39355 27 29931 8068 78.77 37999 28 29458 7879 78.90 37337 29 28641 7549 79.14 36190 30 27519 7141 79.40 34660 31 27507 7188 79.28 34695 32 26778 6952 79.39 33730 33 26175 6941 79.04 33116 34 25727 6776 79.15 32503 35 24778 6568 79.05 31346 36 23621 6344 78.83 29965 37 23065 6108 79.06 29173 38 22802 6078 78.95 28880 39 22067 5880 78.96 27947 40 21652 5984 78.35 27636 41 20484 5476 78.91 25960 42 19887 5398 78.65 25285 43 19131 5234 78.52 24365 44 19305 5101 79.10 24406 45 18463 5020 78.62 23483 46 18222 4825 79.06 23047 47 17890 4817 78.79 22707 48 17043 4626 78.65 21669 49 16433 4540 78.35 20973 50 15968 4325 78.69 20293 51 15457 4049 79.24 19506 52 15332 4134 78.76 19466 53 15055 4076 78.69 19131 54 14395 3973 78.37 18368 55 14166 3782 78.93 17948 56 13666 3813 78.19 17479 57 13426 3651 78.62 17077 58 12904 3535 78.50 16439 59 12502 3437 78.44 15939 60 12019 3291 78.50 15310 61 11839 3238 78.52 15077 62 11581 3153 78.60 14734 63 11151 2963 79.01 14114 64 10867 3017 78.27 13884 65 10793 2923 78.69 13716 66 9958 2782 78.16 12740 67 9907 2759 78.22 12666 68 9616 2635 78.49 12251 69 9481 2747 77.54 12228 70 9176 2529 78.39 11705 71 9053 2621 77.55 11674 72 8510 2561 76.87 11071 73 8492 2424 77.79 10916 74 8229 2285 78.27 10514 75 7729 2196 77.87 9925 76 7537 2179 77.57 9716 77 7103 2036 77.72 9139 78 6657 2026 76.67 8683 79 5626 1721 76.58 7347 80 3681 1218 75.14 4899 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5879 161714 3.51 167593 2 3039 130069 2.28 133108 3 2946 123984 2.32 126930 4 2007 116743 1.69 118750 5 2335 110734 2.07 113069 6 2403 108573 2.17 110976 7 1827 107653 1.67 109480 8 1936 108003 1.76 109939 9 1520 101742 1.47 103262 10 1511 99744 1.49 101255 11 1528 96551 1.56 98079 12 1470 95890 1.51 97360 13 1424 91812 1.53 93236 14 1387 90121 1.52 91508 15 1337 89805 1.47 91142 16 1310 86983 1.48 88293 17 1258 83183 1.49 84441 18 1306 82448 1.56 83754 19 1265 79363 1.57 80628 20 1220 76694 1.57 77914 21 1208 76062 1.56 77270 22 1113 72574 1.51 73687 23 1151 71883 1.58 73034 24 1089 70893 1.51 71982 25 1075 67397 1.57 68472 26 1028 66037 1.53 67065 27 1072 65617 1.61 66689 28 995 62688 1.56 63683 29 936 62303 1.48 63239 30 866 59414 1.44 60280 31 938 58524 1.58 59462 32 930 56088 1.63 57018 33 902 55627 1.60 56529 34 834 53394 1.54 54228 35 820 52118 1.55 52938 36 773 50569 1.51 51342 37 747 48823 1.51 49570 38 744 47371 1.55 48115 39 695 46826 1.46 47521 40 671 45273 1.46 45944 41 679 44289 1.51 44968 42 677 43203 1.54 43880 43 661 41997 1.55 42658 44 619 40382 1.51 41001 45 572 39764 1.42 40336 46 564 38415 1.45 38979 47 632 37703 1.65 38335 48 564 36617 1.52 37181 49 557 35030 1.57 35587 50 564 33746 1.64 34310 51 527 33929 1.53 34456 52 520 32375 1.58 32895 53 468 31517 1.46 31985 54 486 30932 1.55 31418 55 468 30127 1.53 30595 56 468 29477 1.56 29945 57 495 29290 1.66 29785 58 425 27555 1.52 27980 59 434 26874 1.59 27308 60 400 26707 1.48 27107 61 478 25044 1.87 25522 62 405 24451 1.63 24856 63 399 24445 1.61 24844 64 330 23245 1.40 23575 65 360 22717 1.56 23077 66 329 22232 1.46 22561 67 322 21332 1.49 21654 68 303 21175 1.41 21478 69 307 20446 1.48 20753 70 332 19872 1.64 20204 71 316 19341 1.61 19657 72 271 18861 1.42 19132 73 298 18032 1.63 18330 74 279 17983 1.53 18262 75 268 17466 1.51 17734 76 257 16708 1.51 16965 77 224 15697 1.41 15921 78 233 14833 1.55 15066 79 185 12574 1.45 12759 80 133 8688 1.51 8821 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 13185 504343 2.55 517528 2 9691 392546 2.41 402237 3 7336 368464 1.95 375800 4 6264 344372 1.79 350636 5 6355 330266 1.89 336621 6 6247 310987 1.97 317234 7 4665 304924 1.51 309589 8 4691 295981 1.56 300672 9 4387 292672 1.48 297059 10 4426 289056 1.51 293482 11 4237 273599 1.53 277836 12 3960 267844 1.46 271804 13 3928 264361 1.46 268289 14 3806 255529 1.47 259335 15 3760 251520 1.47 255280 16 3607 247656 1.44 251263 17 3642 239218 1.50 242860 18 3463 235200 1.45 238663 19 3408 230423 1.46 233831 20 3384 222892 1.50 226276 21 3213 218697 1.45 221910 22 3170 210966 1.48 214136 23 3186 206780 1.52 209966 24 2928 201711 1.43 204639 25 3035 197840 1.51 200875 26 2880 192482 1.47 195362 27 3196 186992 1.68 190188 28 2863 184602 1.53 187465 29 2584 178026 1.43 180610 30 2600 173773 1.47 176373 31 2863 173607 1.62 176470 32 2436 164748 1.46 167184 33 2513 161176 1.54 163689 34 2331 158923 1.45 161254 35 2346 155547 1.49 157893 36 2332 150960 1.52 153292 37 2293 148760 1.52 151053 38 2231 144252 1.52 146483 39 2133 140207 1.50 142340 40 2009 138966 1.43 140975 41 2000 135244 1.46 137244 42 2009 130988 1.51 132997 43 1921 128925 1.47 130846 44 1855 123973 1.47 125828 45 1885 120255 1.54 122140 46 1815 120250 1.49 122065 47 1812 115745 1.54 117557 48 1724 115222 1.47 116946 49 1745 113019 1.52 114764 50 1594 107277 1.46 108871 51 1526 104352 1.44 105878 52 1613 103815 1.53 105428 53 1462 97819 1.47 99281 54 1466 95522 1.51 96988 55 1412 94371 1.47 95783 56 1376 91698 1.48 93074 57 1496 90371 1.63 91867 58 1333 87048 1.51 88381 59 1331 87029 1.51 88360 60 1236 83626 1.46 84862 61 1367 80537 1.67 81904 62 1198 78680 1.50 79878 63 1215 77112 1.55 78327 64 1186 77062 1.52 78248 65 1083 73305 1.46 74388 66 1032 70630 1.44 71662 67 1031 69923 1.45 70954 68 1070 69513 1.52 70583 69 1063 67469 1.55 68532 70 964 64627 1.47 65591 71 1027 62960 1.61 63987 72 884 62456 1.40 63340 73 903 59224 1.50 60127 74 844 57293 1.45 58137 75 803 55565 1.42 56368 76 833 53914 1.52 54747 77 754 51602 1.44 52356 78 749 48480 1.52 49229 79 654 43099 1.49 43753 80 450 28569 1.55 29019