CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 105387 26957 79.63 132344 2 113679 26174 81.28 139853 3 106910 25221 80.91 132131 4 105957 25077 80.86 131034 5 107180 24948 81.12 132128 6 106983 24680 81.26 131663 7 111535 25954 81.12 137489 8 108733 25394 81.07 134127 9 108462 25011 81.26 133473 10 112194 25093 81.72 137287 11 114454 25855 81.57 140309 12 113989 25388 81.78 139377 13 115058 25020 82.14 140078 14 113579 25344 81.76 138923 15 112787 25143 81.77 137930 16 114466 25278 81.91 139744 17 112800 25251 81.71 138051 18 112842 24756 82.01 137598 19 113276 24891 81.98 138167 20 114183 25472 81.76 139655 21 113897 24926 82.04 138823 22 113579 24940 82.00 138519 23 114078 25325 81.83 139403 24 112652 24761 81.98 137413 25 114088 24886 82.09 138974 26 113486 25419 81.70 138905 27 111470 24635 81.90 136105 28 111903 24803 81.86 136706 29 110773 24637 81.81 135410 30 109539 24222 81.89 133761 31 111214 24655 81.85 135869 32 109805 24013 82.06 133818 33 108529 23849 81.98 132378 34 108665 24022 81.90 132687 35 107035 23395 82.06 130430 36 105184 22967 82.08 128151 37 105452 23133 82.01 128585 38 104176 22740 82.08 126916 39 103300 22090 82.38 125390 40 102873 22534 82.03 125407 41 100229 21934 82.05 122163 42 98200 21506 82.03 119706 43 97793 21168 82.21 118961 44 96551 21179 82.01 117730 45 94593 20491 82.19 115084 46 94881 20715 82.08 115596 47 92746 19992 82.27 112738 48 91163 19399 82.45 110562 49 90202 19527 82.20 109729 50 88007 19833 81.61 107840 51 85377 18543 82.16 103920 52 84684 18499 82.07 103183 53 83410 18178 82.11 101588 54 82908 18077 82.10 100985 55 81594 17779 82.11 99373 56 80642 17484 82.18 98126 57 79229 17039 82.30 96268 58 77779 16923 82.13 94702 59 75405 16813 81.77 92218 60 74033 16104 82.13 90137 61 72777 16072 81.91 88849 62 70546 15513 81.97 86059 63 69001 14865 82.28 83866 64 67946 14778 82.14 82724 65 66349 14483 82.08 80832 66 64644 14072 82.12 78716 67 63837 13714 82.32 77551 68 62011 13520 82.10 75531 69 60479 13244 82.04 73723 70 59349 12969 82.07 72318 71 58389 12889 81.92 71278 72 55531 12242 81.94 67773 73 54892 12315 81.68 67207 74 52923 12050 81.45 64973 75 51083 11068 82.19 62151 76 49552 10860 82.02 60412 77 47173 10425 81.90 57598 78 43648 9396 82.29 53044 79 35399 7870 81.81 43269 80 16617 3787 81.44 20404 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7218 215338 3.24 222556 2 4281 219366 1.91 223647 3 3800 226679 1.65 230479 4 2997 225763 1.31 228760 5 3365 222049 1.49 225414 6 3329 226148 1.45 229477 7 2987 228575 1.29 231562 8 3090 231855 1.32 234945 9 2786 228920 1.20 231706 10 2801 229343 1.21 232144 11 2905 227182 1.26 230087 12 2920 231027 1.25 233947 13 3035 226003 1.33 229038 14 2834 225882 1.24 228716 15 2851 230440 1.22 233291 16 2912 227822 1.26 230734 17 2957 226815 1.29 229772 18 2940 232103 1.25 235043 19 2928 229976 1.26 232904 20 2861 228189 1.24 231050 21 2939 231078 1.26 234017 22 2822 227935 1.22 230757 23 2931 228350 1.27 231281 24 3003 230247 1.29 233250 25 2804 227735 1.22 230539 26 2951 224588 1.30 227539 27 2903 228549 1.25 231452 28 2783 225574 1.22 228357 29 2908 224486 1.28 227394 30 2860 223431 1.26 226291 31 2824 221907 1.26 224731 32 2796 219286 1.26 222082 33 2895 221125 1.29 224020 34 2957 214705 1.36 217662 35 2682 212455 1.25 215137 36 2750 212766 1.28 215516 37 2696 207419 1.28 210115 38 2639 205154 1.27 207793 39 2443 207663 1.16 210106 40 2594 202854 1.26 205448 41 2527 199354 1.25 201881 42 2432 198862 1.21 201294 43 2401 194170 1.22 196571 44 2363 189834 1.23 192197 45 2326 191637 1.20 193963 46 2248 185449 1.20 187697 47 2438 182904 1.32 185342 48 2194 180631 1.20 182825 49 2264 176822 1.26 179086 50 2167 173761 1.23 175928 51 2373 173605 1.35 175978 52 2097 169191 1.22 171288 53 2115 165536 1.26 167651 54 1975 164168 1.19 166143 55 2016 161504 1.23 163520 56 2004 158249 1.25 160253 57 2058 158452 1.28 160510 58 1808 152312 1.17 154120 59 2071 149942 1.36 152013 60 1831 149965 1.21 151796 61 1758 143479 1.21 145237 62 1891 140545 1.33 142436 63 1787 140635 1.25 142422 64 1691 134857 1.24 136548 65 1626 131752 1.22 133378 66 1547 130790 1.17 132337 67 1527 125848 1.20 127375 68 1561 122507 1.26 124068 69 1423 120598 1.17 122021 70 1455 117106 1.23 118561 71 1489 114604 1.28 116093 72 1338 112433 1.18 113771 73 1351 108506 1.23 109857 74 1280 105256 1.20 106536 75 1378 103809 1.31 105187 76 1252 98731 1.25 99983 77 1223 94389 1.28 95612 78 1082 87290 1.22 88372 79 883 70498 1.24 71381 80 434 33166 1.29 33600 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16635 633658 2.56 650293 2 14471 632123 2.24 646594 3 13019 641667 1.99 654686 4 11988 641439 1.83 653427 5 12043 626259 1.89 638302 6 11279 612186 1.81 623465 7 10647 609873 1.72 620520 8 10315 601673 1.69 611988 9 10493 606111 1.70 616604 10 10455 611084 1.68 621539 11 10565 595831 1.74 606396 12 10284 595437 1.70 605721 13 11315 601397 1.85 612712 14 10117 596155 1.67 606272 15 10522 601893 1.72 612415 16 10607 608478 1.71 619085 17 10620 601012 1.74 611632 18 10442 606163 1.69 616605 19 10655 609983 1.72 620638 20 10479 602899 1.71 613378 21 10667 604166 1.73 614833 22 10395 603840 1.69 614235 23 10132 603442 1.65 613574 24 10475 602591 1.71 613066 25 9898 605764 1.61 615662 26 9831 596640 1.62 606471 27 9400 596600 1.55 606000 28 9258 598634 1.52 607892 29 9046 589805 1.51 598851 30 8816 586666 1.48 595482 31 8804 596325 1.45 605129 32 8510 580109 1.45 588619 33 8630 575227 1.48 583857 34 8732 576865 1.49 585597 35 7772 569535 1.35 577307 36 7632 565547 1.33 573179 37 7605 564478 1.33 572083 38 7282 553822 1.30 561104 39 7090 551571 1.27 558661 40 7210 549850 1.29 557060 41 7139 540421 1.30 547560 42 6984 533747 1.29 540731 43 6782 531323 1.26 538105 44 6588 519420 1.25 526008 45 6382 512810 1.23 519192 46 6414 511514 1.24 517928 47 6521 500919 1.29 507440 48 6114 499524 1.21 505638 49 6222 498119 1.23 504341 50 5936 478712 1.22 484648 51 6125 469944 1.29 476069 52 5684 473803 1.19 479487 53 5773 454162 1.26 459935 54 5533 448295 1.22 453828 55 5378 445136 1.19 450514 56 5236 434663 1.19 439899 57 5260 430313 1.21 435573 58 5125 422829 1.20 427954 59 5714 416871 1.35 422585 60 5001 407513 1.21 412514 61 4946 400122 1.22 405068 62 5007 388984 1.27 393991 63 4632 384086 1.19 388718 64 4585 380839 1.19 385424 65 4457 367767 1.20 372224 66 4364 357891 1.20 362255 67 4310 353776 1.20 358086 68 4196 347754 1.19 351950 69 4008 339467 1.17 343475 70 3943 329731 1.18 333674 71 4112 320779 1.27 324891 72 3687 314777 1.16 318464 73 3515 304476 1.14 307991 74 3431 294260 1.15 297691 75 3761 285778 1.30 289539 76 3479 279559 1.23 283038 77 3013 263673 1.13 266686 78 2944 245013 1.19 247957 79 2387 200308 1.18 202695 80 1072 92272 1.15 93344 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 63538 17855 78.06 81393 2 51785 12647 80.37 64432 3 45832 10932 80.74 56764 4 40542 9932 80.32 50474 5 39335 9487 80.57 48822 6 38361 9247 80.58 47608 7 39235 9324 80.80 48559 8 36976 8819 80.74 45795 9 35840 8444 80.93 44284 10 35723 8182 81.36 43905 11 35848 8151 81.47 43999 12 34362 7790 81.52 42152 13 33471 7558 81.58 41029 14 32770 7351 81.68 40121 15 31888 7060 81.87 38948 16 31249 6825 82.07 38074 17 30217 6617 82.04 36834 18 28547 6395 81.70 34942 19 27982 6218 81.82 34200 20 27062 6096 81.62 33158 21 26324 5979 81.49 32303 22 25482 5521 82.19 31003 23 25024 5445 82.13 30469 24 24065 5267 82.04 29332 25 23821 5237 81.98 29058 26 22658 5196 81.35 27854 27 21686 4865 81.68 26551 28 21479 4584 82.41 26063 29 20512 4614 81.64 25126 30 19710 4196 82.45 23906 31 19604 4255 82.17 23859 32 18943 4170 81.96 23113 33 18355 4081 81.81 22436 34 18263 3981 82.10 22244 35 17435 3726 82.39 21161 36 16470 3604 82.05 20074 37 16216 3371 82.79 19587 38 16092 3477 82.23 19569 39 15292 3277 82.35 18569 40 15076 3086 83.01 18162 41 14386 3167 81.96 17553 42 13541 2959 82.07 16500 43 13281 2999 81.58 16280 44 12982 2867 81.91 15849 45 12694 2584 83.09 15278 46 12414 2529 83.08 14943 47 12122 2634 82.15 14756 48 11415 2514 81.95 13929 49 10976 2400 82.06 13376 50 10651 2269 82.44 12920 51 10272 2220 82.23 12492 52 9957 2095 82.62 12052 53 9854 2167 81.97 12021 54 9560 2008 82.64 11568 55 9189 2025 81.94 11214 56 8778 1956 81.78 10734 57 8883 1946 82.03 10829 58 8446 1839 82.12 10285 59 7849 1749 81.78 9598 60 7768 1653 82.45 9421 61 7565 1756 81.16 9321 62 7464 1692 81.52 9156 63 7173 1505 82.66 8678 64 7023 1477 82.62 8500 65 6834 1432 82.68 8266 66 6530 1424 82.10 7954 67 6428 1300 83.18 7728 68 6165 1324 82.32 7489 69 6030 1304 82.22 7334 70 5766 1227 82.45 6993 71 5712 1263 81.89 6975 72 5423 1242 81.37 6665 73 5049 1221 80.53 6270 74 5098 1124 81.94 6222 75 4850 1107 81.42 5957 76 4642 1054 81.50 5696 77 4364 920 82.59 5284 78 4049 949 81.01 4998 79 3462 819 80.87 4281 80 2322 598 79.52 2920 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4348 137787 3.06 142135 2 2093 103816 1.98 105909 3 2049 95579 2.10 97628 4 1287 88765 1.43 90052 5 1452 82572 1.73 84024 6 1517 81032 1.84 82549 7 1160 80177 1.43 81337 8 1144 80558 1.40 81702 9 906 74690 1.20 75596 10 896 73046 1.21 73942 11 912 70515 1.28 71427 12 859 70381 1.21 71240 13 785 66919 1.16 67704 14 846 64906 1.29 65752 15 743 64868 1.13 65611 16 799 61910 1.27 62709 17 745 59278 1.24 60023 18 739 58631 1.24 59370 19 703 56207 1.24 56910 20 665 53941 1.22 54606 21 625 53415 1.16 54040 22 625 50659 1.22 51284 23 610 49891 1.21 50501 24 555 48904 1.12 49459 25 622 46744 1.31 47366 26 589 44917 1.29 45506 27 585 44476 1.30 45061 28 509 43041 1.17 43550 29 473 41816 1.12 42289 30 568 40167 1.39 40735 31 485 39493 1.21 39978 32 466 37778 1.22 38244 33 497 37467 1.31 37964 34 474 35377 1.32 35851 35 432 34257 1.25 34689 36 438 33323 1.30 33761 37 372 31813 1.16 32185 38 387 30958 1.23 31345 39 342 31127 1.09 31469 40 323 29477 1.08 29800 41 342 28374 1.19 28716 42 339 27963 1.20 28302 43 317 26583 1.18 26900 44 328 25628 1.26 25956 45 277 25427 1.08 25704 46 273 24263 1.11 24536 47 270 23634 1.13 23904 48 253 22589 1.11 22842 49 291 21919 1.31 22210 50 255 21172 1.19 21427 51 246 20702 1.17 20948 52 228 20074 1.12 20302 53 230 19347 1.17 19577 54 198 18919 1.04 19117 55 217 18331 1.17 18548 56 215 17726 1.20 17941 57 224 17883 1.24 18107 58 197 16912 1.15 17109 59 208 16029 1.28 16237 60 172 16335 1.04 16507 61 170 15113 1.11 15283 62 159 14693 1.07 14852 63 152 14532 1.04 14684 64 166 14139 1.16 14305 65 185 13476 1.35 13661 66 165 13263 1.23 13428 67 150 12825 1.16 12975 68 149 12184 1.21 12333 69 138 11890 1.15 12028 70 129 11587 1.10 11716 71 146 11172 1.29 11318 72 145 10783 1.33 10928 73 148 10564 1.38 10712 74 114 10062 1.12 10176 75 123 9904 1.23 10027 76 96 9405 1.01 9501 77 113 8912 1.25 9025 78 106 8438 1.24 8544 79 94 7233 1.28 7327 80 64 4744 1.33 4808 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9819 423291 2.27 433110 2 6500 303578 2.10 310078 3 4737 277743 1.68 282480 4 3854 254884 1.49 258738 5 3808 242891 1.54 246699 6 3823 227995 1.65 231818 7 2892 221710 1.29 224602 8 2707 214933 1.24 217640 9 2531 212626 1.18 215157 10 2483 208378 1.18 210861 11 2409 196011 1.21 198420 12 2278 190649 1.18 192927 13 2188 187170 1.16 189358 14 2095 180813 1.15 182908 15 2057 177917 1.14 179974 16 1998 173798 1.14 175796 17 1915 166976 1.13 168891 18 1854 164946 1.11 166800 19 1857 159749 1.15 161606 20 1799 153826 1.16 155625 21 1710 149969 1.13 151679 22 1746 144206 1.20 145952 23 1707 141226 1.19 142933 24 1558 137134 1.12 138692 25 1612 133836 1.19 135448 26 1505 128609 1.16 130114 27 1591 125349 1.25 126940 28 1438 122256 1.16 123694 29 1376 118413 1.15 119789 30 1371 114525 1.18 115896 31 1476 114463 1.27 115939 32 1274 108160 1.16 109434 33 1291 104826 1.22 106117 34 1257 102106 1.22 103363 35 1137 99968 1.12 101105 36 1096 97995 1.11 99091 37 1127 94702 1.18 95829 38 1101 91550 1.19 92651 39 1004 89258 1.11 90262 40 1011 87538 1.14 88549 41 992 85020 1.15 86012 42 923 81464 1.12 82387 43 914 80156 1.13 81070 44 927 77056 1.19 77983 45 923 75222 1.21 76145 46 828 73857 1.11 74685 47 880 71281 1.22 72161 48 787 70993 1.10 71780 49 783 69537 1.11 70320 50 781 64994 1.19 65775 51 721 62922 1.13 63643 52 729 62994 1.14 63723 53 694 59196 1.16 59890 54 680 57522 1.17 58202 55 655 56307 1.15 56962 56 656 54381 1.19 55037 57 641 53784 1.18 54425 58 581 51026 1.13 51607 59 577 51303 1.11 51880 60 602 48977 1.21 49579 61 662 46929 1.39 47591 62 538 45523 1.17 46061 63 536 44713 1.18 45249 64 465 44307 1.04 44772 65 488 41765 1.15 42253 66 444 40179 1.09 40623 67 455 39792 1.13 40247 68 433 40218 1.07 40651 69 430 38619 1.10 39049 70 467 36801 1.25 37268 71 422 35655 1.17 36077 72 384 35250 1.08 35634 73 373 33245 1.11 33618 74 359 32000 1.11 32359 75 331 31179 1.05 31510 76 345 29873 1.14 30218 77 338 28603 1.17 28941 78 292 26875 1.07 27167 79 291 23928 1.20 24219 80 191 15676 1.20 15867