CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 106751 40191 72.65 146942 2 114448 39142 74.52 153590 3 111451 38071 74.54 149522 4 111967 37448 74.94 149415 5 112725 37706 74.93 150431 6 112695 37719 74.92 150414 7 116664 40964 74.01 157628 8 114480 38686 74.74 153166 9 113402 37630 75.08 151032 10 118135 38642 75.35 156777 11 119945 39208 75.36 159153 12 118693 38163 75.67 156856 13 120208 38485 75.75 158693 14 119799 38672 75.60 158471 15 119801 38277 75.79 158078 16 120762 38297 75.92 159059 17 120720 38615 75.76 159335 18 119232 37837 75.91 157069 19 120071 38299 75.82 158370 20 120339 38098 75.95 158437 21 119921 38140 75.87 158061 22 121010 37961 76.12 158971 23 121757 38317 76.06 160074 24 119608 37496 76.13 157104 25 121389 38456 75.94 159845 26 119985 38271 75.82 158256 27 119038 37432 76.08 156470 28 119295 37630 76.02 156925 29 118443 37425 75.99 155868 30 116759 36774 76.05 153533 31 118659 37515 75.98 156174 32 117560 37158 75.98 154718 33 116273 36687 76.02 152960 34 117338 36371 76.34 153709 35 116053 36321 76.16 152374 36 113683 35385 76.26 149068 37 114193 35517 76.28 149710 38 113498 35663 76.09 149161 39 111849 34983 76.17 146832 40 111807 35201 76.06 147008 41 108750 34073 76.14 142823 42 106760 33608 76.06 140368 43 107331 33462 76.23 140793 44 105420 33100 76.10 138520 45 104015 32295 76.31 136310 46 103777 32500 76.15 136277 47 101973 32665 75.74 134638 48 99284 31514 75.91 130798 49 99660 31203 76.16 130863 50 96902 30994 75.77 127896 51 94355 29883 75.95 124238 52 94154 29504 76.14 123658 53 93214 29560 75.92 122774 54 91874 29180 75.90 121054 55 90963 28768 75.97 119731 56 89515 28775 75.67 118290 57 89075 28111 76.01 117186 58 85906 27616 75.67 113522 59 84308 27426 75.45 111734 60 82652 26410 75.78 109062 61 81841 26395 75.61 108236 62 79931 25741 75.64 105672 63 77348 25174 75.45 102522 64 76462 24538 75.70 101000 65 74982 23808 75.90 98790 66 73329 23551 75.69 96880 67 72036 23163 75.67 95199 68 70727 22543 75.83 93270 69 68047 21976 75.59 90023 70 67665 22276 75.23 89941 71 65906 21265 75.61 87171 72 63598 20953 75.22 84551 73 62206 20476 75.24 82682 74 60892 19821 75.44 80713 75 57982 18926 75.39 76908 76 56730 18545 75.36 75275 77 53843 17677 75.28 71520 78 49585 16565 74.96 66150 79 40455 13465 75.03 53920 80 19159 6568 74.47 25727 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7178 253080 2.76 260258 2 5135 258043 1.95 263178 3 4662 265943 1.72 270605 4 4100 260503 1.55 264603 5 4592 259335 1.74 263927 6 4430 265643 1.64 270073 7 4110 266057 1.52 270167 8 4190 270380 1.53 274570 9 3990 264701 1.48 268691 10 4172 265546 1.55 269718 11 4169 262310 1.56 266479 12 4234 267435 1.56 271669 13 4239 262855 1.59 267094 14 4253 263690 1.59 267943 15 4183 270089 1.53 274272 16 4223 266632 1.56 270855 17 4100 263552 1.53 267652 18 4286 269580 1.56 273866 19 4122 266135 1.53 270257 20 4103 263920 1.53 268023 21 4096 269483 1.50 273579 22 4063 263784 1.52 267847 23 4137 264948 1.54 269085 24 4244 269764 1.55 274008 25 3989 264536 1.49 268525 26 4208 262500 1.58 266708 27 4058 267796 1.49 271854 28 4083 263611 1.53 267694 29 4177 263995 1.56 268172 30 4068 261819 1.53 265887 31 3979 260935 1.50 264914 32 4104 258082 1.57 262186 33 4350 260287 1.64 264637 34 4179 252891 1.63 257070 35 3842 250711 1.51 254553 36 3759 252460 1.47 256219 37 3797 245654 1.52 249451 38 3889 243069 1.57 246958 39 3852 247209 1.53 251061 40 3727 241747 1.52 245474 41 3739 237804 1.55 241543 42 3705 237789 1.53 241494 43 3607 232323 1.53 235930 44 3731 227544 1.61 231275 45 3624 230846 1.55 234470 46 3513 224205 1.54 227718 47 3633 221607 1.61 225240 48 3485 219850 1.56 223335 49 3450 214458 1.58 217908 50 3348 210865 1.56 214213 51 3439 210554 1.61 213993 52 3165 205467 1.52 208632 53 3168 202378 1.54 205546 54 2994 201418 1.46 204412 55 3164 197948 1.57 201112 56 3142 193661 1.60 196803 57 2995 195556 1.51 198551 58 2857 188192 1.50 191049 59 3168 184643 1.69 187811 60 2775 185634 1.47 188409 61 2716 178031 1.50 180747 62 2889 173714 1.64 176603 63 2699 173780 1.53 176479 64 2585 167417 1.52 170002 65 2603 164151 1.56 166754 66 2470 163048 1.49 165518 67 2493 156522 1.57 159015 68 2357 153252 1.51 155609 69 2344 151212 1.53 153556 70 2193 147076 1.47 149269 71 2342 142731 1.61 145073 72 2120 140734 1.48 142854 73 2114 136075 1.53 138189 74 2065 132492 1.53 134557 75 2138 131832 1.60 133970 76 1955 125552 1.53 127507 77 1910 119437 1.57 121347 78 1772 110834 1.57 112606 79 1388 89255 1.53 90643 80 679 42479 1.57 43158 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 20354 781592 2.54 801946 2 17658 773653 2.23 791311 3 16330 787419 2.03 803749 4 15329 783238 1.92 798567 5 15021 764432 1.93 779453 6 14154 741402 1.87 755556 7 13753 743410 1.82 757163 8 13153 732449 1.76 745602 9 13586 740332 1.80 753918 10 13517 745673 1.78 759190 11 13494 722204 1.83 735698 12 13322 720168 1.82 733490 13 14090 725225 1.91 739315 14 13258 716145 1.82 729403 15 13308 722141 1.81 735449 16 13462 730270 1.81 743732 17 13336 720043 1.82 733379 18 13436 724299 1.82 737735 19 13681 731606 1.84 745287 20 13402 726126 1.81 739528 21 13508 728617 1.82 742125 22 13510 723657 1.83 737167 23 13401 725207 1.81 738608 24 13538 723431 1.84 736969 25 13223 727031 1.79 740254 26 13172 718221 1.80 731393 27 12538 718535 1.72 731073 28 12290 721741 1.67 734031 29 12374 711368 1.71 723742 30 12193 710879 1.69 723072 31 12306 725878 1.67 738184 32 11799 706517 1.64 718316 33 12249 701168 1.72 713417 34 12335 705582 1.72 717917 35 11239 698496 1.58 709735 36 10966 692672 1.56 703638 37 11008 692845 1.56 703853 38 10824 681349 1.56 692173 39 10639 679407 1.54 690046 40 10603 681619 1.53 692222 41 10502 670871 1.54 681373 42 10124 663115 1.50 673239 43 10219 662116 1.52 672335 44 9977 646821 1.52 656798 45 9855 640066 1.52 649921 46 9893 642450 1.52 652343 47 9767 630571 1.53 640338 48 9537 628204 1.50 637741 49 9574 627846 1.50 637420 50 9321 604099 1.52 613420 51 9516 596225 1.57 605741 52 8961 600748 1.47 609709 53 8445 576737 1.44 585182 54 8662 567294 1.50 575956 55 8477 567398 1.47 575875 56 8346 555347 1.48 563693 57 8297 551384 1.48 559681 58 8160 539762 1.49 547922 59 8722 535091 1.60 543813 60 7841 524240 1.47 532081 61 7777 513327 1.49 521104 62 7875 501714 1.55 509589 63 7572 496944 1.50 504516 64 7415 495484 1.47 502899 65 7169 477917 1.48 485086 66 6906 463572 1.47 470478 67 6802 459972 1.46 466774 68 6779 456162 1.46 462941 69 6528 445498 1.44 452026 70 6542 432911 1.49 439453 71 6631 421124 1.55 427755 72 6142 414880 1.46 421022 73 5849 400771 1.44 406620 74 5792 388407 1.47 394199 75 6051 376702 1.58 382753 76 5501 368578 1.47 374079 77 5390 350063 1.52 355453 78 4933 326129 1.49 331062 79 4017 266549 1.48 270566 80 1891 122448 1.52 124339 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 66939 27795 70.66 94734 2 55380 20595 72.89 75975 3 49657 18502 72.85 68159 4 46128 16818 73.28 62946 5 44831 16029 73.66 60860 6 43645 16063 73.10 59708 7 44705 16915 72.55 61620 8 42039 15046 73.64 57085 9 40664 14410 73.84 55074 10 41132 14519 73.91 55651 11 40835 14377 73.96 55212 12 39141 13660 74.13 52801 13 38639 13186 74.56 51825 14 37820 12982 74.45 50802 15 37058 12808 74.32 49866 16 36172 12530 74.27 48702 17 34995 12194 74.16 47189 18 33100 11494 74.23 44594 19 32728 11247 74.42 43975 20 31593 10887 74.37 42480 21 30879 10755 74.17 41634 22 30202 10092 74.95 40294 23 29406 9783 75.04 39189 24 28426 9720 74.52 38146 25 28112 9708 74.33 37820 26 26806 9355 74.13 36161 27 25871 9089 74.00 34960 28 25458 8623 74.70 34081 29 24664 8362 74.68 33026 30 23567 7949 74.78 31516 31 23574 8091 74.45 31665 32 22827 7600 75.02 30427 33 21689 7499 74.31 29188 34 21760 7464 74.46 29224 35 20727 7142 74.37 27869 36 19808 6894 74.18 26702 37 19448 6668 74.47 26116 38 18917 6599 74.14 25516 39 18384 6301 74.47 24685 40 18097 6356 74.01 24453 41 17234 5977 74.25 23211 42 16558 5522 74.99 22080 43 15850 5628 73.80 21478 44 15624 5383 74.38 21007 45 15324 5175 74.75 20499 46 14701 5324 73.41 20025 47 14600 5135 73.98 19735 48 13823 4951 73.63 18774 49 13292 4779 73.55 18071 50 12925 4561 73.92 17486 51 12208 4382 73.59 16590 52 12017 4210 74.06 16227 53 12021 4169 74.25 16190 54 11532 4154 73.52 15686 55 11112 3937 73.84 15049 56 10668 3931 73.07 14599 57 10652 3872 73.34 14524 58 10215 3714 73.34 13929 59 9749 3573 73.18 13322 60 9354 3328 73.76 12682 61 9200 3287 73.68 12487 62 9056 3251 73.58 12307 63 8563 3060 73.67 11623 64 8330 3139 72.63 11469 65 8047 3036 72.61 11083 66 7964 2799 73.99 10763 67 7779 2871 73.04 10650 68 7507 2654 73.88 10161 69 7156 2527 73.90 9683 70 6932 2588 72.82 9520 71 6974 2564 73.12 9538 72 6592 2460 72.82 9052 73 6182 2481 71.36 8663 74 6062 2438 71.32 8500 75 5808 2220 72.35 8028 76 5472 2097 72.29 7569 77 5369 2089 71.99 7458 78 4883 1940 71.57 6823 79 4131 1647 71.50 5778 80 2785 1217 69.59 4002 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4304 167830 2.50 172134 2 2412 130398 1.82 132810 3 2207 121218 1.79 123425 4 1794 110772 1.59 112566 5 1859 105951 1.72 107810 6 1925 104431 1.81 106356 7 1567 101763 1.52 103330 8 1655 101585 1.60 103240 9 1328 96566 1.36 97894 10 1389 94128 1.45 95517 11 1408 90121 1.54 91529 12 1337 89243 1.48 90580 13 1331 85674 1.53 87005 14 1264 83091 1.50 84355 15 1348 83340 1.59 84688 16 1191 80788 1.45 81979 17 1209 76418 1.56 77627 18 1158 75892 1.50 77050 19 1021 73209 1.38 74230 20 1025 70776 1.43 71801 21 1056 69810 1.49 70866 22 1034 66166 1.54 67200 23 979 65167 1.48 66146 24 998 64443 1.53 65441 25 940 61185 1.51 62125 26 888 58960 1.48 59848 27 998 58478 1.68 59476 28 875 56386 1.53 57261 29 784 56094 1.38 56878 30 778 53152 1.44 53930 31 849 52142 1.60 52991 32 793 50385 1.55 51178 33 769 49932 1.52 50701 34 712 46905 1.50 47617 35 721 45465 1.56 46186 36 711 44360 1.58 45071 37 681 42439 1.58 43120 38 665 41363 1.58 42028 39 636 40705 1.54 41341 40 586 39571 1.46 40157 41 554 38252 1.43 38806 42 620 37497 1.63 38117 43 567 35477 1.57 36044 44 503 34733 1.43 35236 45 567 34190 1.63 34757 46 460 33118 1.37 33578 47 491 32069 1.51 32560 48 452 30496 1.46 30948 49 461 29621 1.53 30082 50 499 28407 1.73 28906 51 462 28495 1.60 28957 52 395 27354 1.42 27749 53 385 26461 1.43 26846 54 375 25862 1.43 26237 55 358 24955 1.41 25313 56 369 24278 1.50 24647 57 390 23952 1.60 24342 58 348 22813 1.50 23161 59 314 21953 1.41 22267 60 326 21860 1.47 22186 61 328 20568 1.57 20896 62 293 20013 1.44 20306 63 316 19984 1.56 20300 64 273 18839 1.43 19112 65 296 18327 1.59 18623 66 260 18168 1.41 18428 67 262 17281 1.49 17543 68 233 16925 1.36 17158 69 228 16352 1.38 16580 70 227 15764 1.42 15991 71 214 15273 1.38 15487 72 252 14880 1.67 15132 73 201 14272 1.39 14473 74 223 14047 1.56 14270 75 210 13736 1.51 13946 76 204 12918 1.55 13122 77 207 12317 1.65 12524 78 175 11297 1.53 11472 79 152 9878 1.52 10030 80 90 6746 1.32 6836 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12731 537818 2.31 550549 2 8618 400920 2.10 409538 3 6935 371863 1.83 378798 4 5931 343327 1.70 349258 5 5492 326333 1.66 331825 6 5123 307631 1.64 312754 7 4538 300259 1.49 304797 8 4268 291628 1.44 295896 9 4139 287049 1.42 291188 10 4161 281156 1.46 285317 11 3949 264708 1.47 268657 12 3719 257586 1.42 261305 13 3615 252258 1.41 255873 14 3606 242950 1.46 246556 15 3545 239707 1.46 243252 16 3331 235526 1.39 238857 17 3400 227008 1.48 230408 18 3236 223886 1.42 227122 19 3245 218702 1.46 221947 20 3080 210932 1.44 214012 21 3026 205259 1.45 208285 22 2844 198801 1.41 201645 23 2935 193224 1.50 196159 24 2826 188422 1.48 191248 25 2706 184078 1.45 186784 26 2629 177995 1.46 180624 27 2649 173050 1.51 175699 28 2607 170181 1.51 172788 29 2491 164003 1.50 166494 30 2283 158585 1.42 160868 31 2609 159330 1.61 161939 32 2237 150834 1.46 153071 33 2272 146362 1.53 148634 34 2092 143656 1.44 145748 35 2134 139823 1.50 141957 36 2038 136656 1.47 138694 37 2046 133491 1.51 135537 38 1980 129097 1.51 131077 39 1910 126103 1.49 128013 40 1839 123907 1.46 125746 41 1811 120123 1.49 121934 42 1655 115521 1.41 117176 43 1626 113577 1.41 115203 44 1638 108917 1.48 110555 45 1572 105708 1.47 107280 46 1544 105009 1.45 106553 47 1545 101621 1.50 103166 48 1481 100759 1.45 102240 49 1476 99360 1.46 100836 50 1388 92850 1.47 94238 51 1388 90831 1.51 92219 52 1271 91039 1.38 92310 53 1272 84598 1.48 85870 54 1170 82066 1.41 83236 55 1179 80268 1.45 81447 56 1130 78451 1.42 79581 57 1243 77484 1.58 78727 58 1086 73987 1.45 75073 59 1136 73344 1.53 74480 60 1071 70221 1.50 71292 61 1112 67316 1.63 68428 62 969 65228 1.46 66197 63 987 64294 1.51 65281 64 963 64654 1.47 65617 65 902 60240 1.48 61142 66 853 58760 1.43 59613 67 864 57843 1.47 58707 68 812 57640 1.39 58452 69 832 55780 1.47 56612 70 768 53166 1.42 53934 71 777 51803 1.48 52580 72 745 51085 1.44 51830 73 723 48326 1.47 49049 74 666 45873 1.43 46539 75 644 44910 1.41 45554 76 667 43549 1.51 44216 77 596 41240 1.42 41836 78 618 39110 1.56 39728 79 534 34361 1.53 34895 80 357 23055 1.52 23412