CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 95836 36885 72.21 132721 2 104155 35683 74.48 139838 3 96474 35300 73.21 131774 4 95391 34818 73.26 130209 5 96325 34834 73.44 131159 6 96628 34607 73.63 131235 7 98547 36877 72.77 135424 8 97605 35441 73.36 133046 9 97049 34715 73.65 131764 10 101111 35577 73.97 136688 11 102460 35960 74.02 138420 12 102276 35031 74.49 137307 13 102803 35662 74.24 138465 14 101840 35546 74.13 137386 15 101925 34797 74.55 136722 16 103253 35108 74.63 138361 17 101647 35595 74.06 137242 18 101192 34784 74.42 135976 19 101994 34599 74.67 136593 20 101137 34999 74.29 136136 21 101852 34683 74.60 136535 22 102070 35196 74.36 137266 23 102338 34868 74.59 137206 24 101495 34273 74.76 135768 25 102038 34875 74.53 136913 26 101466 35177 74.26 136643 27 100201 34257 74.52 134458 28 100882 34461 74.54 135343 29 99388 33925 74.55 133313 30 98311 33408 74.64 131719 31 99485 33752 74.67 133237 32 98505 33522 74.61 132027 33 97135 32917 74.69 130052 34 97255 33248 74.52 130503 35 96168 32578 74.70 128746 36 94578 31981 74.73 126559 37 93493 31976 74.51 125469 38 92775 31537 74.63 124312 39 91474 30848 74.78 122322 40 91997 31082 74.75 123079 41 89162 30298 74.64 119460 42 87421 29751 74.61 117172 43 86514 29504 74.57 116018 44 85762 29302 74.53 115064 45 83925 28551 74.62 112476 46 83608 28660 74.47 112268 47 82648 28338 74.47 110986 48 80259 27138 74.73 107397 49 79853 27169 74.61 107022 50 77693 26873 74.30 104566 51 75491 25780 74.54 101271 52 75055 25217 74.85 100272 53 73874 25142 74.61 99016 54 73002 24756 74.68 97758 55 72307 24689 74.55 96996 56 71005 24573 74.29 95578 57 69598 23993 74.36 93591 58 68024 23604 74.24 91628 59 66704 23156 74.23 89860 60 65391 22409 74.48 87800 61 64679 22136 74.50 86815 62 62877 21652 74.39 84529 63 60257 20790 74.35 81047 64 59696 20587 74.36 80283 65 58435 20167 74.34 78602 66 56451 19546 74.28 75997 67 55669 19421 74.14 75090 68 54299 18900 74.18 73199 69 52389 18432 73.97 70821 70 51995 17892 74.40 69887 71 50364 17630 74.07 67994 72 48713 17303 73.79 66016 73 47781 16693 74.11 64474 74 45998 16398 73.72 62396 75 44043 15368 74.13 59411 76 43179 14798 74.48 57977 77 41181 14407 74.08 55588 78 37439 13383 73.67 50822 79 30878 10828 74.04 41706 80 14333 5238 73.24 19571 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7696 220546 3.37 228242 2 4173 224207 1.83 228380 3 3947 232155 1.67 236102 4 3150 229998 1.35 233148 5 3488 227758 1.51 231246 6 3525 230535 1.51 234060 7 2901 232255 1.23 235156 8 3113 234755 1.31 237868 9 2805 232369 1.19 235174 10 2846 231018 1.22 233864 11 2990 228883 1.29 231873 12 2950 233519 1.25 236469 13 3010 229417 1.30 232427 14 2915 230683 1.25 233598 15 2840 234850 1.19 237690 16 2902 232727 1.23 235629 17 2879 229523 1.24 232402 18 2904 234879 1.22 237783 19 2914 231277 1.24 234191 20 3014 231410 1.29 234424 21 2938 234840 1.24 237778 22 3007 230499 1.29 233506 23 3015 231956 1.28 234971 24 3158 234359 1.33 237517 25 2889 230077 1.24 232966 26 2998 228141 1.30 231139 27 2894 232814 1.23 235708 28 2845 228481 1.23 231326 29 2890 227350 1.26 230240 30 2808 225944 1.23 228752 31 2796 225114 1.23 227910 32 2807 222547 1.25 225354 33 3027 222312 1.34 225339 34 2953 216399 1.35 219352 35 2715 214975 1.25 217690 36 2634 214405 1.21 217039 37 2572 209014 1.22 211586 38 2623 206270 1.26 208893 39 2680 209342 1.26 212022 40 2520 203017 1.23 205537 41 2571 200643 1.27 203214 42 2450 199673 1.21 202123 43 2406 194460 1.22 196866 44 2392 191353 1.23 193745 45 2411 192235 1.24 194646 46 2293 186598 1.21 188891 47 2376 183658 1.28 186034 48 2240 182636 1.21 184876 49 2219 177816 1.23 180035 50 2203 173453 1.25 175656 51 2266 174845 1.28 177111 52 2108 169553 1.23 171661 53 2030 166200 1.21 168230 54 1958 165650 1.17 167608 55 1953 161755 1.19 163708 56 2017 158156 1.26 160173 57 1948 158389 1.21 160337 58 1949 152075 1.27 154024 59 2139 149151 1.41 151290 60 1865 148911 1.24 150776 61 1719 144582 1.17 146301 62 1898 139873 1.34 141771 63 1741 140043 1.23 141784 64 1686 133825 1.24 135511 65 1608 131223 1.21 132831 66 1637 129828 1.25 131465 67 1567 125208 1.24 126775 68 1553 122326 1.25 123879 69 1443 119729 1.19 121172 70 1378 115712 1.18 117090 71 1512 114247 1.31 115759 72 1336 111655 1.18 112991 73 1260 107297 1.16 108557 74 1282 104820 1.21 106102 75 1365 103182 1.31 104547 76 1274 98443 1.28 99717 77 1180 93007 1.25 94187 78 1046 87002 1.19 88048 79 844 69188 1.21 70032 80 440 33468 1.30 33908 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16452 641011 2.50 657463 2 14895 637685 2.28 652580 3 13052 647994 1.97 661046 4 12068 646705 1.83 658773 5 12281 636247 1.89 648528 6 11861 617354 1.89 629215 7 11145 616871 1.77 628016 8 10802 610480 1.74 621282 9 11038 613116 1.77 624154 10 11145 620989 1.76 632134 11 10945 603392 1.78 614337 12 10864 603946 1.77 614810 13 11614 608812 1.87 620426 14 10798 603159 1.76 613957 15 11121 610014 1.79 621135 16 11187 615902 1.78 627089 17 11140 608965 1.80 620105 18 10982 615999 1.75 626981 19 11043 619978 1.75 631021 20 10981 612497 1.76 623478 21 11146 615266 1.78 626412 22 11067 614015 1.77 625082 23 10821 612070 1.74 622891 24 10872 611385 1.75 622257 25 10396 614342 1.66 624738 26 10067 607633 1.63 617700 27 9769 606301 1.59 616070 28 9652 608206 1.56 617858 29 9429 598334 1.55 607763 30 9196 595761 1.52 604957 31 9476 606004 1.54 615480 32 8641 589031 1.45 597672 33 9107 583607 1.54 592714 34 9021 584189 1.52 593210 35 7930 578560 1.35 586490 36 7839 572769 1.35 580608 37 7783 570368 1.35 578151 38 7568 561484 1.33 569052 39 7440 556316 1.32 563756 40 7299 556793 1.29 564092 41 7247 547317 1.31 554564 42 6931 539942 1.27 546873 43 6911 535713 1.27 542624 44 6858 522304 1.30 529162 45 6739 515933 1.29 522672 46 6504 514322 1.25 520826 47 6633 504527 1.30 511160 48 6316 502738 1.24 509054 49 6276 499090 1.24 505366 50 5924 481177 1.22 487101 51 6281 472346 1.31 478627 52 5916 473977 1.23 479893 53 5684 456442 1.23 462126 54 5703 448366 1.26 454069 55 5440 443841 1.21 449281 56 5283 435876 1.20 441159 57 5332 432280 1.22 437612 58 5130 423567 1.20 428697 59 5749 417036 1.36 422785 60 5007 409251 1.21 414258 61 4906 399160 1.21 404066 62 5045 389198 1.28 394243 63 4494 382740 1.16 387234 64 4546 379838 1.18 384384 65 4598 367163 1.24 371761 66 4207 357582 1.16 361789 67 4210 352073 1.18 356283 68 4078 347220 1.16 351298 69 4089 338791 1.19 342880 70 3945 330049 1.18 333994 71 4115 319621 1.27 323736 72 3739 313636 1.18 317375 73 3593 303221 1.17 306814 74 3486 293539 1.17 297025 75 3753 283945 1.30 287698 76 3475 276031 1.24 279506 77 3111 262263 1.17 265374 78 2932 243371 1.19 246303 79 2363 198480 1.18 200843 80 1106 91938 1.19 93044 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 56190 24055 70.02 80245 2 46230 17119 72.98 63349 3 40085 15074 72.67 55159 4 35111 13589 72.10 48700 5 34767 13043 72.72 47810 6 33494 12865 72.25 46359 7 33869 13276 71.84 47145 8 32036 12146 72.51 44182 9 31091 11629 72.78 42720 10 31268 11498 73.11 42766 11 30921 11685 72.57 42606 12 29704 10960 73.05 40664 13 29364 10462 73.73 39826 14 28483 10446 73.17 38929 15 27875 10144 73.32 38019 16 27160 9724 73.64 36884 17 25806 9289 73.53 35095 18 24874 9139 73.13 34013 19 24430 8710 73.72 33140 20 23519 8482 73.49 32001 21 22985 8357 73.34 31342 22 22344 8054 73.50 30398 23 21891 7656 74.09 29547 24 20797 7432 73.67 28229 25 20671 7294 73.92 27965 26 19726 7306 72.97 27032 27 19146 6795 73.81 25941 28 18804 6643 73.89 25447 29 17835 6402 73.59 24237 30 17400 6245 73.59 23645 31 16845 6096 73.43 22941 32 16602 5952 73.61 22554 33 15966 5596 74.05 21562 34 15937 5601 73.99 21538 35 15270 5405 73.86 20675 36 14698 5124 74.15 19822 37 14230 5035 73.86 19265 38 13795 4909 73.75 18704 39 13412 4802 73.64 18214 40 13208 4733 73.62 17941 41 12570 4503 73.63 17073 42 11925 4280 73.59 16205 43 11877 4253 73.63 16130 44 11311 4104 73.38 15415 45 10997 3987 73.39 14984 46 10755 3963 73.07 14718 47 10414 3881 72.85 14295 48 10071 3564 73.86 13635 49 9808 3509 73.65 13317 50 9243 3507 72.49 12750 51 8913 3294 73.02 12207 52 8847 3133 73.85 11980 53 8489 3081 73.37 11570 54 8147 3091 72.50 11238 55 8042 3074 72.35 11116 56 7668 2921 72.41 10589 57 7735 2869 72.94 10604 58 7209 2694 72.80 9903 59 7114 2670 72.71 9784 60 6637 2552 72.23 9189 61 6715 2487 72.97 9202 62 6507 2420 72.89 8927 63 6160 2316 72.68 8476 64 6069 2193 73.46 8262 65 5919 2202 72.89 8121 66 5658 2090 73.03 7748 67 5540 2057 72.92 7597 68 5278 2017 72.35 7295 69 4991 1952 71.89 6943 70 5027 1915 72.41 6942 71 4983 1885 72.55 6868 72 4684 1802 72.22 6486 73 4650 1818 71.89 6468 74 4364 1762 71.24 6126 75 4225 1630 72.16 5855 76 4038 1492 73.02 5530 77 3878 1545 71.51 5423 78 3508 1395 71.55 4903 79 2981 1238 70.66 4219 80 1961 828 70.31 2789 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4529 139490 3.14 144019 2 2066 103599 1.96 105665 3 2256 96444 2.29 98700 4 1247 89211 1.38 90458 5 1420 82261 1.70 83681 6 1624 80757 1.97 82381 7 1072 80103 1.32 81175 8 1180 79960 1.45 81140 9 895 74495 1.19 75390 10 938 72409 1.28 73347 11 874 70346 1.23 71220 12 842 69869 1.19 70711 13 818 67201 1.20 68019 14 797 64834 1.21 65631 15 786 64296 1.21 65082 16 704 61543 1.13 62247 17 714 59309 1.19 60023 18 712 57695 1.22 58407 19 713 55764 1.26 56477 20 677 53358 1.25 54035 21 621 52632 1.17 53253 22 555 50077 1.10 50632 23 662 49356 1.32 50018 24 556 49196 1.12 49752 25 544 46269 1.16 46813 26 561 44639 1.24 45200 27 557 44262 1.24 44819 28 495 42587 1.15 43082 29 523 41431 1.25 41954 30 457 39694 1.14 40151 31 525 38684 1.34 39209 32 491 37398 1.30 37889 33 442 37380 1.17 37822 34 414 35098 1.17 35512 35 453 34018 1.31 34471 36 397 33041 1.19 33438 37 371 31888 1.15 32259 38 391 30914 1.25 31305 39 332 30628 1.07 30960 40 365 29451 1.22 29816 41 352 28736 1.21 29088 42 307 27524 1.10 27831 43 317 26518 1.18 26835 44 296 25609 1.14 25905 45 270 25446 1.05 25716 46 270 24610 1.09 24880 47 289 23869 1.20 24158 48 275 22769 1.19 23044 49 254 22188 1.13 22442 50 283 21383 1.31 21666 51 217 21033 1.02 21250 52 246 19896 1.22 20142 53 219 19431 1.11 19650 54 229 19353 1.17 19582 55 213 18810 1.12 19023 56 217 17951 1.19 18168 57 200 17691 1.12 17891 58 198 17204 1.14 17402 59 194 16256 1.18 16450 60 188 16182 1.15 16370 61 193 15213 1.25 15406 62 180 14768 1.20 14948 63 181 14625 1.22 14806 64 159 13968 1.13 14127 65 156 13565 1.14 13721 66 155 13408 1.14 13563 67 162 12687 1.26 12849 68 152 12411 1.21 12563 69 143 11925 1.18 12068 70 130 11597 1.11 11727 71 146 11238 1.28 11384 72 120 11010 1.08 11130 73 123 10596 1.15 10719 74 122 10232 1.18 10354 75 110 9982 1.09 10092 76 97 9589 1.00 9686 77 121 9000 1.33 9121 78 91 8501 1.06 8592 79 107 7240 1.46 7347 80 64 4913 1.29 4977 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9967 422418 2.31 432385 2 6414 302666 2.08 309080 3 4644 273900 1.67 278544 4 3670 252292 1.43 255962 5 3711 240733 1.52 244444 6 3757 225835 1.64 229592 7 2757 219743 1.24 222500 8 2598 213484 1.20 216082 9 2526 211106 1.18 213632 10 2504 206105 1.20 208609 11 2305 195759 1.16 198064 12 2355 189725 1.23 192080 13 2103 187293 1.11 189396 14 2212 180222 1.21 182434 15 2093 177663 1.16 179756 16 2093 174618 1.18 176711 17 2069 167475 1.22 169544 18 1955 163961 1.18 165916 19 1756 158529 1.10 160285 20 1743 153507 1.12 155250 21 1785 149740 1.18 151525 22 1727 144559 1.18 146286 23 1633 140445 1.15 142078 24 1609 137120 1.16 138729 25 1614 133862 1.19 135476 26 1477 129216 1.13 130693 27 1606 125543 1.26 127149 28 1374 122703 1.11 124077 29 1453 118580 1.21 120033 30 1370 115357 1.17 116727 31 1487 114689 1.28 116176 32 1298 108533 1.18 109831 33 1362 105444 1.28 106806 34 1248 103470 1.19 104718 35 1178 100905 1.15 102083 36 1208 98426 1.21 99634 37 1100 95777 1.14 96877 38 1108 92209 1.19 93317 39 1062 89990 1.17 91052 40 1018 88427 1.14 89445 41 1016 85812 1.17 86828 42 943 82476 1.13 83419 43 931 80566 1.14 81497 44 990 77543 1.26 78533 45 846 75158 1.11 76004 46 908 74301 1.21 75209 47 850 71836 1.17 72686 48 844 71457 1.17 72301 49 819 69905 1.16 70724 50 792 65690 1.19 66482 51 771 63743 1.20 64514 52 751 63738 1.16 64489 53 758 59302 1.26 60060 54 673 57982 1.15 58655 55 677 57518 1.16 58195 56 636 55358 1.14 55994 57 699 54902 1.26 55601 58 628 51863 1.20 52491 59 615 51688 1.18 52303 60 612 49702 1.22 50314 61 592 47276 1.24 47868 62 552 46183 1.18 46735 63 535 45545 1.16 46080 64 538 45071 1.18 45609 65 511 42579 1.19 43090 66 474 41153 1.14 41627 67 510 40413 1.25 40923 68 497 40423 1.21 40920 69 486 39185 1.23 39671 70 436 37631 1.15 38067 71 480 36248 1.31 36728 72 430 36012 1.18 36442 73 395 34173 1.14 34568 74 389 32512 1.18 32901 75 382 31801 1.19 32183 76 339 30375 1.10 30714 77 343 29018 1.17 29361 78 300 27197 1.09 27497 79 254 24129 1.04 24383 80 191 16257 1.16 16448