CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 143126 32793 81.36 175919 2 155494 31567 83.12 187061 3 145318 30912 82.46 176230 4 144936 30510 82.61 175446 5 146200 29709 83.11 175909 6 145407 29808 82.99 175215 7 149841 32341 82.25 182182 8 148484 30119 83.14 178603 9 146964 29461 83.30 176425 10 152997 30553 83.35 183550 11 155052 30525 83.55 185577 12 153014 29840 83.68 182854 13 156193 30328 83.74 186521 14 154587 30303 83.61 184890 15 154243 29962 83.73 184205 16 155984 30381 83.70 186365 17 155037 29691 83.93 184728 18 153062 29885 83.66 182947 19 153889 29830 83.76 183719 20 154187 29724 83.84 183911 21 154447 29763 83.84 184210 22 155146 30125 83.74 185271 23 155423 29511 84.04 184934 24 153949 29409 83.96 183358 25 156685 29630 84.10 186315 26 154737 29725 83.89 184462 27 152883 28746 84.17 181629 28 153908 29621 83.86 183529 29 152077 29038 83.97 181115 30 150230 28757 83.93 178987 31 151796 29681 83.64 181477 32 151713 28707 84.09 180420 33 149320 28173 84.13 177493 34 151101 28913 83.94 180014 35 148700 28261 84.03 176961 36 146107 27421 84.20 173528 37 146361 27800 84.04 174161 38 145292 27775 83.95 173067 39 143919 27373 84.02 171292 40 143500 27559 83.89 171059 41 140125 26664 84.01 166789 42 137973 25902 84.19 163875 43 137340 26106 84.03 163446 44 136791 25966 84.05 162757 45 133517 25357 84.04 158874 46 134448 25350 84.14 159798 47 132760 25695 83.78 158455 48 129803 24254 84.26 154057 49 129190 24929 83.82 154119 50 127610 24808 83.72 152418 51 122422 23284 84.02 145706 52 122929 23306 84.06 146235 53 121257 23058 84.02 144315 54 119702 22795 84.00 142497 55 120075 23099 83.87 143174 56 118213 22593 83.95 140806 57 116622 22027 84.11 138649 58 114618 21986 83.91 136604 59 112199 21487 83.93 133686 60 108907 20824 83.95 129731 61 108606 20909 83.86 129515 62 105673 20236 83.93 125909 63 102798 19670 83.94 122468 64 102434 19398 84.08 121832 65 100101 19057 84.01 119158 66 97774 18563 84.04 116337 67 95980 18269 84.01 114249 68 94620 18318 83.78 112938 69 92249 17679 83.92 109928 70 91015 17661 83.75 108676 71 88634 17348 83.63 105982 72 86149 16864 83.63 103013 73 84363 16593 83.56 100956 74 82529 16000 83.76 98529 75 79381 15157 83.97 94538 76 78087 14979 83.90 93066 77 74292 14522 83.65 88814 78 67955 13676 83.25 81631 79 55161 10886 83.52 66047 80 26617 5340 83.29 31957 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 10225 266257 3.70 276482 2 5247 270396 1.90 275643 3 4999 281675 1.74 286674 4 3880 279862 1.37 283742 5 4496 275891 1.60 280387 6 4460 281451 1.56 285911 7 3817 282582 1.33 286399 8 3807 285933 1.31 289740 9 3556 282719 1.24 286275 10 3644 280819 1.28 284463 11 3657 279432 1.29 283089 12 3595 284331 1.25 287926 13 3847 278793 1.36 282640 14 3603 279767 1.27 283370 15 3709 286964 1.28 290673 16 3650 283334 1.27 286984 17 3772 278899 1.33 282671 18 3799 287017 1.31 290816 19 3781 281421 1.33 285202 20 3722 280626 1.31 284348 21 3664 286472 1.26 290136 22 3625 280121 1.28 283746 23 3819 280947 1.34 284766 24 4012 285197 1.39 289209 25 3698 280455 1.30 284153 26 3870 277098 1.38 280968 27 3562 283426 1.24 286988 28 3627 278699 1.28 282326 29 3777 277553 1.34 281330 30 3705 277672 1.32 281377 31 3559 277091 1.27 280650 32 3587 272778 1.30 276365 33 3862 275730 1.38 279592 34 3799 267907 1.40 271706 35 3541 266340 1.31 269881 36 3455 267242 1.28 270697 37 3357 260019 1.27 263376 38 3456 257889 1.32 261345 39 3417 262479 1.29 265896 40 3267 255096 1.26 258363 41 3433 251858 1.34 255291 42 3330 253999 1.29 257329 43 3106 247561 1.24 250667 44 3236 242072 1.32 245308 45 3079 245611 1.24 248690 46 3019 239093 1.25 242112 47 3281 234530 1.38 237811 48 3017 235025 1.27 238042 49 2979 230124 1.28 233103 50 3071 224671 1.35 227742 51 3097 227263 1.34 230360 52 2949 220147 1.32 223096 53 2885 216629 1.31 219514 54 2839 216190 1.30 219029 55 2738 212709 1.27 215447 56 2739 209178 1.29 211917 57 2704 211147 1.26 213851 58 2644 203869 1.28 206513 59 2943 200517 1.45 203460 60 2568 200666 1.26 203234 61 2565 192904 1.31 195469 62 2755 188492 1.44 191247 63 2548 188624 1.33 191172 64 2277 182173 1.23 184450 65 2369 179111 1.31 181480 66 2165 176650 1.21 178815 67 2118 172141 1.22 174259 68 2172 168861 1.27 171033 69 2060 166246 1.22 168306 70 1976 161614 1.21 163590 71 2163 158508 1.35 160671 72 1955 156858 1.23 158813 73 1928 152465 1.25 154393 74 1910 147907 1.27 149817 75 1973 146893 1.33 148866 76 1815 139922 1.28 141737 77 1684 133701 1.24 135385 78 1599 124943 1.26 126542 79 1244 100340 1.22 101584 80 669 48687 1.36 49356 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 18299 759347 2.35 777646 2 16371 750674 2.13 767045 3 14061 762162 1.81 776223 4 12965 762461 1.67 775426 5 13155 747454 1.73 760609 6 12522 726873 1.69 739395 7 11762 730969 1.58 742731 8 11444 719939 1.56 731383 9 11559 724141 1.57 735700 10 11680 733862 1.57 745542 11 11436 714901 1.57 726337 12 11397 711824 1.58 723221 13 12239 721079 1.67 733318 14 11308 712104 1.56 723412 15 11534 720187 1.58 731721 16 11308 728877 1.53 740185 17 11544 718010 1.58 729554 18 11381 726037 1.54 737418 19 11849 733426 1.59 745275 20 11446 721585 1.56 733031 21 11591 723256 1.58 734847 22 11518 726254 1.56 737772 23 11490 723569 1.56 735059 24 11869 723279 1.61 735148 25 11241 727674 1.52 738915 26 11021 717933 1.51 728954 27 10699 717250 1.47 727949 28 10397 724352 1.42 734749 29 10262 708533 1.43 718795 30 10023 706828 1.40 716851 31 10367 720132 1.42 730499 32 9754 703176 1.37 712930 33 10067 694760 1.43 704827 34 10223 700346 1.44 710569 35 9376 691394 1.34 700770 36 9052 690000 1.29 699052 37 9106 689128 1.30 698234 38 8970 677693 1.31 686663 39 8705 674431 1.27 683136 40 8608 676297 1.26 684905 41 8525 665398 1.26 673923 42 8168 657571 1.23 665739 43 8230 658178 1.23 666408 44 8233 642635 1.26 650868 45 8093 637134 1.25 645227 46 7823 639064 1.21 646887 47 8111 626473 1.28 634584 48 7787 624381 1.23 632168 49 7734 624613 1.22 632347 50 7443 603290 1.22 610733 51 7853 592981 1.31 600834 52 7301 599833 1.20 607134 53 7285 577120 1.25 584405 54 6972 569102 1.21 576074 55 6691 566762 1.17 573453 56 6832 553720 1.22 560552 57 6669 552273 1.19 558942 58 6588 543327 1.20 549915 59 7193 534782 1.33 541975 60 6539 528080 1.22 534619 61 6431 518266 1.23 524697 62 6625 506130 1.29 512755 63 6144 500529 1.21 506673 64 6047 500441 1.19 506488 65 5932 483794 1.21 489726 66 5685 472638 1.19 478323 67 5525 467355 1.17 472880 68 5533 460432 1.19 465965 69 5336 452240 1.17 457576 70 5196 442816 1.16 448012 71 5376 431358 1.23 436734 72 4977 424817 1.16 429794 73 4951 413589 1.18 418540 74 4738 400918 1.17 405656 75 5108 390326 1.29 395434 76 4663 381386 1.21 386049 77 4315 362518 1.18 366833 78 4021 337986 1.18 342007 79 3429 278278 1.22 281707 80 1619 129496 1.23 131115 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 90062 22511 80.00 112573 2 79283 17000 82.34 96283 3 71008 15361 82.21 86369 4 63939 14185 81.84 78124 5 63003 13484 82.37 76487 6 61170 13406 82.02 74576 7 61272 14008 81.39 75280 8 59640 12727 82.41 72367 9 57975 11948 82.91 69923 10 58817 12265 82.75 71082 11 58533 12199 82.75 70732 12 56145 11384 83.14 67529 13 55593 11254 83.16 66847 14 54023 10881 83.24 64904 15 53022 10609 83.33 63631 16 52365 10455 83.36 62820 17 50162 10278 82.99 60440 18 48046 9738 83.15 57784 19 46831 9442 83.22 56273 20 45741 8925 83.67 54666 21 45283 8810 83.71 54093 22 43887 8572 83.66 52459 23 42691 8455 83.47 51146 24 41583 8207 83.52 49790 25 41267 8326 83.21 49593 26 40140 7828 83.68 47968 27 38023 7495 83.53 45518 28 37656 7356 83.66 45012 29 36423 7198 83.50 43621 30 35396 6834 83.82 42230 31 34837 6800 83.67 41637 32 34537 6642 83.87 41179 33 33118 6429 83.74 39547 34 32691 6310 83.82 39001 35 31392 6251 83.39 37643 36 30232 5742 84.04 35974 37 29956 5887 83.58 35843 38 29272 5658 83.80 34930 39 28332 5746 83.14 34078 40 27770 5476 83.53 33246 41 26194 5319 83.12 31513 42 25751 4985 83.78 30736 43 25330 4870 83.87 30200 44 24488 4776 83.68 29264 45 24109 4540 84.15 28649 46 23332 4747 83.09 28079 47 22670 4600 83.13 27270 48 22042 4337 83.56 26379 49 21344 4251 83.39 25595 50 20638 4100 83.43 24738 51 19943 3853 83.81 23796 52 19434 3930 83.18 23364 53 19087 3771 83.50 22858 54 18623 3607 83.77 22230 55 18443 3643 83.51 22086 56 17881 3525 83.53 21406 57 17527 3595 82.98 21122 58 16561 3390 83.01 19951 59 16151 3172 83.58 19323 60 15527 3094 83.38 18621 61 15215 3128 82.95 18343 62 14816 2922 83.53 17738 63 14402 2749 83.97 17151 64 14065 2745 83.67 16810 65 13631 2655 83.70 16286 66 13192 2673 83.15 15865 67 12966 2515 83.75 15481 68 12421 2530 83.08 14951 69 11975 2504 82.71 14479 70 11837 2391 83.20 14228 71 11645 2363 83.13 14008 72 11218 2241 83.35 13459 73 10715 2303 82.31 13018 74 10498 2160 82.94 12658 75 9936 2036 82.99 11972 76 9623 2018 82.66 11641 77 9012 1788 83.44 10800 78 8508 1830 82.30 10338 79 7255 1533 82.56 8788 80 4637 1055 81.47 5692 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6529 179021 3.52 185550 2 3053 141778 2.11 144831 3 3127 136909 2.23 140036 4 1847 129287 1.41 131134 5 2103 120483 1.72 122586 6 2395 118890 1.97 121285 7 1657 118151 1.38 119808 8 1877 118191 1.56 120068 9 1476 111252 1.31 112728 10 1406 108323 1.28 109729 11 1394 105206 1.31 106600 12 1353 104451 1.28 105804 13 1211 100872 1.19 102083 14 1212 97570 1.23 98782 15 1252 97436 1.27 98688 16 1104 95339 1.14 96443 17 1176 90048 1.29 91224 18 1108 90249 1.21 91357 19 1088 86144 1.25 87232 20 1101 83210 1.31 84311 21 1043 82748 1.24 83791 22 1038 79402 1.29 80440 23 1021 78043 1.29 79064 24 968 76570 1.25 77538 25 900 72829 1.22 73729 26 956 70547 1.34 71503 27 937 71481 1.29 72418 28 862 68392 1.24 69254 29 810 66818 1.20 67628 30 844 64205 1.30 65049 31 867 63614 1.34 64481 32 749 61206 1.21 61955 33 759 60134 1.25 60893 34 723 57123 1.25 57846 35 684 55682 1.21 56366 36 652 54929 1.17 55581 37 648 52538 1.22 53186 38 606 51448 1.16 52054 39 609 51193 1.18 51802 40 618 49371 1.24 49989 41 589 48254 1.21 48843 42 561 47118 1.18 47679 43 546 44660 1.21 45206 44 571 43522 1.29 44093 45 582 43193 1.33 43775 46 522 41735 1.24 42257 47 492 41072 1.18 41564 48 465 39379 1.17 39844 49 466 38050 1.21 38516 50 506 36746 1.36 37252 51 501 36787 1.34 37288 52 454 34984 1.28 35438 53 446 34377 1.28 34823 54 430 33869 1.25 34299 55 389 32363 1.19 32752 56 414 31958 1.28 32372 57 445 31572 1.39 32017 58 341 29776 1.13 30117 59 381 28800 1.31 29181 60 354 29012 1.21 29366 61 364 27413 1.31 27777 62 373 26924 1.37 27297 63 348 26375 1.30 26723 64 327 25214 1.28 25541 65 344 24614 1.38 24958 66 298 24248 1.21 24546 67 314 23382 1.33 23696 68 297 22825 1.28 23122 69 288 21979 1.29 22267 70 260 21550 1.19 21810 71 285 21077 1.33 21362 72 256 20287 1.25 20543 73 246 19911 1.22 20157 74 264 18810 1.38 19074 75 225 19007 1.17 19232 76 214 18080 1.17 18294 77 206 16885 1.21 17091 78 207 15800 1.29 16007 79 173 13715 1.25 13888 80 106 8934 1.17 9040 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12025 529622 2.22 541647 2 8597 403352 2.09 411949 3 6109 376562 1.60 382671 4 5088 352592 1.42 357680 5 5137 339283 1.49 344420 6 5495 319257 1.69 324752 7 3946 313931 1.24 317877 8 3858 304347 1.25 308205 9 3663 301431 1.20 305094 10 3492 297115 1.16 300607 11 3402 282530 1.19 285932 12 3244 275435 1.16 278679 13 3221 271909 1.17 275130 14 3008 263130 1.13 266138 15 3034 261155 1.15 264189 16 2812 256533 1.08 259345 17 2899 246436 1.16 249335 18 2806 242455 1.14 245261 19 2759 237846 1.15 240605 20 2630 229513 1.13 232143 21 2599 224690 1.14 227289 22 2454 217484 1.12 219938 23 2454 213312 1.14 215766 24 2419 206886 1.16 209305 25 2346 203550 1.14 205896 26 2295 196981 1.15 199276 27 2368 193058 1.21 195426 28 2265 189449 1.18 191714 29 2144 182865 1.16 185009 30 2090 179070 1.15 181160 31 2308 178239 1.28 180547 32 2048 169861 1.19 171909 33 2055 165423 1.23 167478 34 1849 163218 1.12 165067 35 1896 159186 1.18 161082 36 1827 155725 1.16 157552 37 1807 152185 1.17 153992 38 1685 147400 1.13 149085 39 1671 144062 1.15 145733 40 1642 141419 1.15 143061 41 1608 137856 1.15 139464 42 1544 134153 1.14 135697 43 1473 131392 1.11 132865 44 1513 126801 1.18 128314 45 1373 123360 1.10 124733 46 1391 122547 1.12 123938 47 1315 118851 1.09 120166 48 1396 117395 1.18 118791 49 1343 115705 1.15 117048 50 1325 108856 1.20 110181 51 1264 106766 1.17 108030 52 1229 106316 1.14 107545 53 1189 100294 1.17 101483 54 1188 97806 1.20 98994 55 1085 96329 1.11 97414 56 1120 93255 1.19 94375 57 1138 92721 1.21 93859 58 1038 89302 1.15 90340 59 1080 87860 1.21 88940 60 944 84770 1.10 85714 61 1027 81688 1.24 82715 62 908 79785 1.13 80693 63 847 78323 1.07 79170 64 913 78147 1.15 79060 65 898 74198 1.20 75096 66 827 72103 1.13 72930 67 806 71117 1.12 71923 68 868 70205 1.22 71073 69 778 68295 1.13 69073 70 725 65896 1.09 66621 71 791 63733 1.23 64524 72 760 62975 1.19 63735 73 722 60147 1.19 60869 74 655 57958 1.12 58613 75 688 57115 1.19 57803 76 639 55020 1.15 55659 77 619 52656 1.16 53275 78 594 48569 1.21 49163 79 488 43128 1.12 43616 80 357 28278 1.25 28635