CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 118783 36434 76.53 155217 2 128347 34795 78.67 163142 3 119646 34545 77.60 154191 4 120058 34348 77.75 154406 5 121751 33663 78.34 155414 6 120801 33931 78.07 154732 7 123747 35734 77.59 159481 8 122025 34744 77.84 156769 9 122494 33443 78.55 155937 10 126521 34647 78.50 161168 11 128893 35081 78.61 163974 12 127364 34025 78.92 161389 13 129221 34131 79.11 163352 14 127961 34395 78.82 162356 15 128143 33803 79.13 161946 16 129290 34394 78.99 163684 17 127728 34264 78.85 161992 18 127166 33784 79.01 160950 19 128151 34040 79.01 162191 20 127515 33971 78.96 161486 21 127607 33622 79.15 161229 22 128020 34002 79.01 162022 23 128454 34162 78.99 162616 24 127655 33924 79.00 161579 25 129293 34459 78.96 163752 26 127882 34110 78.94 161992 27 125485 32982 79.19 158467 28 126009 33541 78.98 159550 29 125270 33395 78.95 158665 30 123420 32543 79.13 155963 31 124953 33144 79.04 158097 32 122883 32529 79.07 155412 33 121383 31842 79.22 153225 34 122258 32303 79.10 154561 35 120325 31586 79.21 151911 36 117365 30760 79.23 148125 37 117569 30925 79.17 148494 38 117006 30704 79.21 147710 39 114431 30017 79.22 144448 40 113695 30212 79.01 143907 41 111073 29687 78.91 140760 42 108413 28591 79.13 137004 43 108042 28285 79.25 136327 44 107682 28390 79.14 136072 45 104514 27465 79.19 131979 46 104261 27368 79.21 131629 47 102083 27312 78.89 129395 48 99281 26313 79.05 125594 49 98203 26158 78.97 124361 50 96453 25776 78.91 122229 51 93272 24663 79.09 117935 52 92070 24576 78.93 116646 53 90814 24272 78.91 115086 54 89732 23912 78.96 113644 55 88607 23408 79.10 112015 56 86280 23275 78.75 109555 57 84985 22715 78.91 107700 58 83454 22322 78.90 105776 59 80862 21862 78.72 102724 60 79311 21394 78.76 100705 61 77866 20713 78.99 98579 62 75255 20373 78.70 95628 63 73270 19449 79.02 92719 64 71932 19126 79.00 91058 65 69695 18924 78.65 88619 66 67937 18014 79.04 85951 67 66640 17898 78.83 84538 68 64953 17335 78.93 82288 69 62851 17106 78.61 79957 70 61806 16775 78.65 78581 71 59882 16538 78.36 76420 72 57514 15730 78.52 73244 73 56097 15519 78.33 71616 74 54563 15043 78.39 69606 75 51870 14255 78.44 66125 76 50917 13579 78.95 64496 77 47886 13037 78.60 60923 78 43711 12120 78.29 55831 79 35115 9460 78.78 44575 80 16645 4705 77.96 21350 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8550 252515 3.28 261065 2 4855 256576 1.86 261431 3 4387 266930 1.62 271317 4 3602 263371 1.35 266973 5 4033 259696 1.53 263729 6 3886 265125 1.44 269011 7 3511 266919 1.30 270430 8 3485 269371 1.28 272856 9 3332 267850 1.23 271182 10 3425 265717 1.27 269142 11 3475 263648 1.30 267123 12 3520 268994 1.29 272514 13 3585 263219 1.34 266804 14 3527 264884 1.31 268411 15 3467 271088 1.26 274555 16 3533 267136 1.31 270669 17 3434 264455 1.28 267889 18 3589 271698 1.30 275287 19 3418 267144 1.26 270562 20 3451 265849 1.28 269300 21 3406 270407 1.24 273813 22 3416 266401 1.27 269817 23 3509 267442 1.30 270951 24 3685 270071 1.35 273756 25 3519 265970 1.31 269489 26 3710 261991 1.40 265701 27 3351 268759 1.23 272110 28 3337 261921 1.26 265258 29 3421 261694 1.29 265115 30 3270 260528 1.24 263798 31 3354 259166 1.28 262520 32 3326 255463 1.29 258789 33 3549 256134 1.37 259683 34 3458 248373 1.37 251831 35 3199 246017 1.28 249216 36 3061 247253 1.22 250314 37 3079 240957 1.26 244036 38 3051 236607 1.27 239658 39 3003 239292 1.24 242295 40 2857 233623 1.21 236480 41 2976 229314 1.28 232290 42 2904 228884 1.25 231788 43 2843 222629 1.26 225472 44 2738 217460 1.24 220198 45 2842 219048 1.28 221890 46 2642 212469 1.23 215111 47 2858 208765 1.35 211623 48 2596 207498 1.24 210094 49 2577 202606 1.26 205183 50 2473 196950 1.24 199423 51 2638 197506 1.32 200144 52 2517 191275 1.30 193792 53 2368 187403 1.25 189771 54 2357 186114 1.25 188471 55 2272 181556 1.24 183828 56 2326 177777 1.29 180103 57 2253 177237 1.26 179490 58 2154 170919 1.24 173073 59 2452 166925 1.45 169377 60 2136 167289 1.26 169425 61 2034 160173 1.25 162207 62 2163 155595 1.37 157758 63 1909 154849 1.22 156758 64 1854 148603 1.23 150457 65 1905 144611 1.30 146516 66 1759 142660 1.22 144419 67 1709 137332 1.23 139041 68 1747 134176 1.29 135923 69 1687 131416 1.27 133103 70 1654 126184 1.29 127838 71 1698 123356 1.36 125054 72 1527 121162 1.24 122689 73 1448 116414 1.23 117862 74 1399 113171 1.22 114570 75 1508 111328 1.34 112836 76 1410 105218 1.32 106628 77 1279 99578 1.27 100857 78 1166 92308 1.25 93474 79 964 73312 1.30 74276 80 435 34660 1.24 35095 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19118 709966 2.62 729084 2 17020 703491 2.36 720511 3 15367 713440 2.11 728807 4 14424 711746 1.99 726170 5 14413 698054 2.02 712467 6 14057 679502 2.03 693559 7 13198 681555 1.90 694753 8 13001 671099 1.90 684100 9 13329 676340 1.93 689669 10 13185 682349 1.90 695534 11 12871 665823 1.90 678694 12 13216 663457 1.95 676673 13 14079 672892 2.05 686971 14 13017 665422 1.92 678439 15 13375 672990 1.95 686365 16 13426 678174 1.94 691600 17 13338 670852 1.95 684190 18 13328 676018 1.93 689346 19 13353 683098 1.92 696451 20 13243 673772 1.93 687015 21 13263 676436 1.92 689699 22 13262 676552 1.92 689814 23 12981 675722 1.88 688703 24 13258 672783 1.93 686041 25 12353 676671 1.79 689024 26 11890 667565 1.75 679455 27 11629 666531 1.71 678160 28 11232 669343 1.65 680575 29 11166 656401 1.67 667567 30 10798 653362 1.63 664160 31 10749 663251 1.59 674000 32 10188 645334 1.55 655522 33 10500 637904 1.62 648404 34 10570 640220 1.62 650790 35 9617 631629 1.50 641246 36 9262 626790 1.46 636052 37 9108 625375 1.44 634483 38 8794 610884 1.42 619678 39 8697 608270 1.41 616967 40 8610 606759 1.40 615369 41 8489 594517 1.41 603006 42 8097 585829 1.36 593926 43 8048 581352 1.37 589400 44 7794 567735 1.35 575529 45 7734 558960 1.36 566694 46 7566 559225 1.33 566791 47 7514 545625 1.36 553139 48 7226 541738 1.32 548964 49 7269 537124 1.34 544393 50 6894 518309 1.31 525203 51 7035 508937 1.36 515972 52 6554 509418 1.27 515972 53 6465 489601 1.30 496066 54 6098 479722 1.26 485820 55 6117 476459 1.27 482576 56 6031 465408 1.28 471439 57 5934 459910 1.27 465844 58 5849 448876 1.29 454725 59 6306 440568 1.41 446874 60 5529 431899 1.26 437428 61 5676 421574 1.33 427250 62 5609 410487 1.35 416096 63 5213 402732 1.28 407945 64 5151 399711 1.27 404862 65 5118 383873 1.32 388991 66 4834 373413 1.28 378247 67 4566 368308 1.22 372874 68 4675 359372 1.28 364047 69 4410 352079 1.24 356489 70 4231 341658 1.22 345889 71 4383 330647 1.31 335030 72 4056 323227 1.24 327283 73 4011 311786 1.27 315797 74 3778 300168 1.24 303946 75 4001 291348 1.35 295349 76 3732 283007 1.30 286739 77 3349 267514 1.24 270863 78 3075 246308 1.23 249383 79 2470 200170 1.22 202640 80 1132 92331 1.21 93463 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 67445 23070 74.51 90515 2 53525 15771 77.24 69296 3 46547 13738 77.21 60285 4 40204 12250 76.65 52454 5 39142 11682 77.01 50824 6 37656 11415 76.74 49071 7 37657 11835 76.09 49492 8 36109 10494 77.48 46603 9 35146 10281 77.37 45427 10 35198 10150 77.62 45348 11 34522 9944 77.64 44466 12 33328 9423 77.96 42751 13 32583 9103 78.16 41686 14 31732 8875 78.14 40607 15 30721 8785 77.76 39506 16 29782 8396 78.01 38178 17 28945 8177 77.97 37122 18 27654 7764 78.08 35418 19 26248 7357 78.11 33605 20 25278 7168 77.91 32446 21 24823 6894 78.26 31717 22 24155 6760 78.13 30915 23 23365 6517 78.19 29882 24 22455 6215 78.32 28670 25 22105 6291 77.85 28396 26 21442 5996 78.15 27438 27 20587 5633 78.52 26220 28 19827 5462 78.40 25289 29 19105 5306 78.26 24411 30 18347 4919 78.86 23266 31 18145 4973 78.49 23118 32 17595 4975 77.96 22570 33 16962 4779 78.02 21741 34 16533 4632 78.11 21165 35 16127 4425 78.47 20552 36 15085 4211 78.18 19296 37 14674 4069 78.29 18743 38 14526 3880 78.92 18406 39 13935 3869 78.27 17804 40 13423 3816 77.86 17239 41 12779 3559 78.22 16338 42 12306 3344 78.63 15650 43 12043 3292 78.53 15335 44 11706 3264 78.20 14970 45 11221 3089 78.41 14310 46 10809 3026 78.13 13835 47 10468 3027 77.57 13495 48 10033 2813 78.10 12846 49 9786 2767 77.96 12553 50 9369 2702 77.62 12071 51 8994 2542 77.96 11536 52 8702 2390 78.45 11092 53 8413 2355 78.13 10768 54 8423 2307 78.50 10730 55 8044 2222 78.36 10266 56 7700 2241 77.46 9941 57 7701 2245 77.43 9946 58 7254 2042 78.03 9296 59 7039 1972 78.12 9011 60 6607 1829 78.32 8436 61 6417 1798 78.11 8215 62 6407 1807 78.00 8214 63 6077 1711 78.03 7788 64 5961 1669 78.13 7630 65 5648 1630 77.60 7278 66 5551 1554 78.13 7105 67 5121 1568 76.56 6689 68 5061 1477 77.41 6538 69 4970 1407 77.94 6377 70 4860 1389 77.77 6249 71 4567 1389 76.68 5956 72 4467 1289 77.61 5756 73 4307 1325 76.47 5632 74 4122 1201 77.44 5323 75 4004 1166 77.45 5170 76 3828 1176 76.50 5004 77 3502 1037 77.15 4539 78 3304 1013 76.53 4317 79 2728 873 75.76 3601 80 1854 612 75.18 2466 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5285 153490 3.33 158775 2 2442 111158 2.15 113600 3 2403 103119 2.28 105522 4 1302 94254 1.36 95556 5 1540 86294 1.75 87834 6 1775 84109 2.07 85884 7 1171 83595 1.38 84766 8 1295 83855 1.52 85150 9 904 77501 1.15 78405 10 928 75071 1.22 75999 11 966 73000 1.31 73966 12 874 72144 1.20 73018 13 838 68656 1.21 69494 14 797 66237 1.19 67034 15 800 65480 1.21 66280 16 767 63244 1.20 64011 17 723 59878 1.19 60601 18 744 59052 1.24 59796 19 662 55791 1.17 56453 20 701 54201 1.28 54902 21 647 52654 1.21 53301 22 657 50369 1.29 51026 23 610 49241 1.22 49851 24 628 48532 1.28 49160 25 569 45302 1.24 45871 26 592 44316 1.32 44908 27 592 43830 1.33 44422 28 565 41885 1.33 42450 29 515 40685 1.25 41200 30 486 38665 1.24 39151 31 510 38221 1.32 38731 32 451 36663 1.22 37114 33 497 35931 1.36 36428 34 377 33792 1.10 34169 35 419 33080 1.25 33499 36 409 31913 1.27 32322 37 348 30263 1.14 30611 38 382 29589 1.27 29971 39 386 29107 1.31 29493 40 329 27946 1.16 28275 41 342 26970 1.25 27312 42 359 26406 1.34 26765 43 340 24797 1.35 25137 44 310 24090 1.27 24400 45 299 23643 1.25 23942 46 303 22680 1.32 22983 47 290 22104 1.29 22394 48 247 21317 1.15 21564 49 255 20425 1.23 20680 50 267 19670 1.34 19937 51 233 19540 1.18 19773 52 227 18358 1.22 18585 53 227 17878 1.25 18105 54 198 17539 1.12 17737 55 200 16835 1.17 17035 56 197 16129 1.21 16326 57 215 15992 1.33 16207 58 200 14986 1.32 15186 59 179 14340 1.23 14519 60 175 14602 1.18 14777 61 183 13715 1.32 13898 62 157 13171 1.18 13328 63 167 12997 1.27 13164 64 166 12357 1.33 12523 65 155 11936 1.28 12091 66 129 11727 1.09 11856 67 153 10978 1.37 11131 68 140 10785 1.28 10925 69 145 10584 1.35 10729 70 118 10233 1.14 10351 71 141 9775 1.42 9916 72 107 9504 1.11 9611 73 121 9059 1.32 9180 74 115 8941 1.27 9056 75 97 8762 1.09 8859 76 96 8121 1.17 8217 77 100 7695 1.28 7795 78 88 7118 1.22 7206 79 83 6131 1.34 6214 80 55 4009 1.35 4064 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11729 456484 2.51 468213 2 7369 315317 2.28 322686 3 5038 283240 1.75 288278 4 4017 256119 1.54 260136 5 4146 242264 1.68 246410 6 4232 227327 1.83 231559 7 2912 221145 1.30 224057 8 2711 213626 1.25 216337 9 2696 209403 1.27 212099 10 2664 205316 1.28 207980 11 2421 194151 1.23 196572 12 2363 188315 1.24 190678 13 2319 184439 1.24 186758 14 2269 177364 1.26 179633 15 2111 174348 1.20 176459 16 2093 169960 1.22 172053 17 2019 162967 1.22 164986 18 1962 158933 1.22 160895 19 1951 153937 1.25 155888 20 1837 148291 1.22 150128 21 1775 143762 1.22 145537 22 1741 137922 1.25 139663 23 1711 134015 1.26 135726 24 1605 129073 1.23 130678 25 1665 126322 1.30 127987 26 1530 121851 1.24 123381 27 1612 118164 1.35 119776 28 1420 114629 1.22 116049 29 1438 109979 1.29 111417 30 1317 107341 1.21 108658 31 1374 106325 1.28 107699 32 1226 100430 1.21 101656 33 1375 97316 1.39 98691 34 1230 95705 1.27 96935 35 1191 92284 1.27 93475 36 1143 89886 1.26 91029 37 1119 87681 1.26 88800 38 1063 83971 1.25 85034 39 1032 81338 1.25 82370 40 949 79407 1.18 80356 41 970 77092 1.24 78062 42 915 73892 1.22 74807 43 926 72451 1.26 73377 44 885 69139 1.26 70024 45 887 67196 1.30 68083 46 816 66021 1.22 66837 47 852 63675 1.32 64527 48 809 63133 1.27 63942 49 771 61347 1.24 62118 50 701 57924 1.20 58625 51 710 55826 1.26 56536 52 719 55726 1.27 56445 53 699 51993 1.33 52692 54 621 50439 1.22 51060 55 629 49722 1.25 50351 56 585 47784 1.21 48369 57 625 46743 1.32 47368 58 558 44636 1.23 45194 59 552 43798 1.24 44350 60 491 42091 1.15 42582 61 560 40129 1.38 40689 62 485 39226 1.22 39711 63 486 38408 1.25 38894 64 491 37650 1.29 38141 65 443 35496 1.23 35939 66 394 34058 1.14 34452 67 436 33386 1.29 33822 68 369 33139 1.10 33508 69 389 32214 1.19 32603 70 406 30862 1.30 31268 71 395 29835 1.31 30230 72 393 29334 1.32 29727 73 321 27704 1.15 28025 74 348 26507 1.30 26855 75 319 25372 1.24 25691 76 316 24371 1.28 24687 77 293 23509 1.23 23802 78 253 21994 1.14 22247 79 231 19061 1.20 19292 80 170 12652 1.33 12822