CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 71877 24987 74.20 96864 2 77425 24453 76.00 101878 3 75675 24252 75.73 99927 4 76116 23932 76.08 100048 5 75734 23841 76.06 99575 6 75949 23907 76.06 99856 7 78232 25303 75.56 103535 8 77758 24464 76.07 102222 9 76023 23433 76.44 99456 10 79569 23940 76.87 103509 11 79763 24401 76.57 104164 12 79952 23630 77.19 103582 13 80640 24228 76.90 104868 14 80642 24238 76.89 104880 15 80822 23672 77.35 104494 16 82121 24356 77.13 106477 17 81022 24220 76.99 105242 18 79827 23832 77.01 103659 19 80776 23491 77.47 104267 20 80320 23860 77.10 104180 21 80426 23504 77.38 103930 22 81297 23737 77.40 105034 23 81362 24142 77.12 105504 24 80574 23846 77.16 104420 25 81655 24063 77.24 105718 26 81142 24172 77.05 105314 27 79161 23645 77.00 102806 28 80384 23902 77.08 104286 29 79038 23571 77.03 102609 30 78969 23001 77.44 101970 31 79985 23754 77.10 103739 32 79457 23197 77.40 102654 33 78544 23130 77.25 101674 34 79456 23475 77.19 102931 35 78243 23039 77.25 101282 36 76801 22276 77.52 99077 37 76730 22557 77.28 99287 38 76757 22826 77.08 99583 39 76726 22414 77.39 99140 40 75987 22590 77.08 98577 41 74837 21920 77.35 96757 42 73095 21512 77.26 94607 43 73248 21284 77.48 94532 44 72596 21583 77.08 94179 45 71393 20892 77.36 92285 46 71812 21018 77.36 92830 47 70836 20973 77.16 91809 48 69328 20209 77.43 89537 49 69302 20092 77.52 89394 50 68369 20173 77.22 88542 51 65964 19550 77.14 85514 52 66184 19655 77.10 85839 53 65551 19132 77.41 84683 54 64472 19103 77.14 83575 55 64474 18841 77.39 83315 56 63720 18769 77.25 82489 57 62788 18523 77.22 81311 58 61614 18415 76.99 80029 59 60372 17975 77.06 78347 60 58956 17808 76.80 76764 61 58696 17754 76.78 76450 62 57180 17014 77.07 74194 63 55948 16740 76.97 72688 64 55404 16531 77.02 71935 65 54125 16208 76.96 70333 66 52632 15751 76.97 68383 67 52397 15771 76.86 68168 68 51328 15330 77.00 66658 69 49738 15192 76.60 64930 70 49473 15151 76.56 64624 71 48305 14819 76.52 63124 72 46434 14229 76.54 60663 73 45892 14113 76.48 60005 74 45057 13645 76.76 58702 75 42893 12904 76.87 55797 76 41958 12996 76.35 54954 77 40100 12233 76.62 52333 78 36691 11287 76.47 47978 79 29417 9101 76.37 38518 80 13300 4272 75.69 17572 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4804 154635 3.01 159439 2 3172 157900 1.97 161072 3 2965 162901 1.79 165866 4 2684 162540 1.62 165224 5 2905 159111 1.79 162016 6 2769 162796 1.67 165565 7 2680 164233 1.61 166913 8 2722 164876 1.62 167598 9 2573 164762 1.54 167335 10 2631 162452 1.59 165083 11 2689 161735 1.64 164424 12 2611 163745 1.57 166356 13 2564 162476 1.55 165040 14 2689 161706 1.64 164395 15 2686 166095 1.59 168781 16 2606 164350 1.56 166956 17 2666 161464 1.62 164130 18 2600 166056 1.54 168656 19 2610 163645 1.57 166255 20 2541 162336 1.54 164877 21 2632 164728 1.57 167360 22 2530 162780 1.53 165310 23 2641 163034 1.59 165675 24 2566 165981 1.52 168547 25 2541 163018 1.53 165559 26 2617 160603 1.60 163220 27 2540 164583 1.52 167123 28 2552 161887 1.55 164439 29 2591 162267 1.57 164858 30 2598 161565 1.58 164163 31 2510 161412 1.53 163922 32 2520 159056 1.56 161576 33 2547 161101 1.56 163648 34 2487 157940 1.55 160427 35 2459 154953 1.56 157412 36 2442 156280 1.54 158722 37 2405 152083 1.56 154488 38 2424 150611 1.58 153035 39 2340 153864 1.50 156204 40 2324 151463 1.51 153787 41 2355 149029 1.56 151384 42 2292 150004 1.50 152296 43 2202 145940 1.49 148142 44 2268 143158 1.56 145426 45 2224 145561 1.50 147785 46 2131 142029 1.48 144160 47 2193 140181 1.54 142374 48 2103 139714 1.48 141817 49 2140 137517 1.53 139657 50 2453 134028 1.80 136481 51 2149 135706 1.56 137855 52 2205 131990 1.64 134195 53 2066 130204 1.56 132270 54 2026 130021 1.53 132047 55 2019 128092 1.55 130111 56 1988 126065 1.55 128053 57 1910 126252 1.49 128162 58 1884 122442 1.52 124326 59 1887 121290 1.53 123177 60 1824 121037 1.48 122861 61 1830 116670 1.54 118500 62 1866 113908 1.61 115774 63 1753 114453 1.51 116206 64 1747 111135 1.55 112882 65 1607 108614 1.46 110221 66 1674 107536 1.53 109210 67 1619 104729 1.52 106348 68 1609 102746 1.54 104355 69 1504 101579 1.46 103083 70 1463 98470 1.46 99933 71 1460 96671 1.49 98131 72 1491 95896 1.53 97387 73 1378 92587 1.47 93965 74 1410 89772 1.55 91182 75 1333 89730 1.46 91063 76 1244 85370 1.44 86614 77 1238 80423 1.52 81661 78 1134 74576 1.50 75710 79 928 58626 1.56 59554 80 466 27066 1.69 27532 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11543 452277 2.49 463820 2 10260 447381 2.24 457641 3 9406 452762 2.04 462168 4 8819 450640 1.92 459459 5 8355 437939 1.87 446294 6 8179 430399 1.86 438578 7 7757 430181 1.77 437938 8 7685 425211 1.78 432896 9 7907 427157 1.82 435064 10 8078 431898 1.84 439976 11 7592 419813 1.78 427405 12 7612 417219 1.79 424831 13 7632 422925 1.77 430557 14 7680 416054 1.81 423734 15 7704 419825 1.80 427529 16 7618 424575 1.76 432193 17 7582 418750 1.78 426332 18 7541 422553 1.75 430094 19 7821 426494 1.80 434315 20 7626 420902 1.78 428528 21 7796 423060 1.81 430856 22 7710 422887 1.79 430597 23 7651 421620 1.78 429271 24 7583 422747 1.76 430330 25 7478 422650 1.74 430128 26 7319 418122 1.72 425441 27 7170 418932 1.68 426102 28 7188 421318 1.68 428506 29 7276 414311 1.73 421587 30 6935 414784 1.64 421719 31 6960 423094 1.62 430054 32 6881 413809 1.64 420690 33 6808 410288 1.63 417096 34 6643 413158 1.58 419801 35 6720 409757 1.61 416477 36 6446 407727 1.56 414173 37 6398 409140 1.54 415538 38 6374 401774 1.56 408148 39 6218 400137 1.53 406355 40 6404 401904 1.57 408308 41 6194 395109 1.54 401303 42 5938 392616 1.49 398554 43 6022 392373 1.51 398395 44 6021 384241 1.54 390262 45 5740 380123 1.49 385863 46 5645 382275 1.46 387920 47 5769 376128 1.51 381897 48 5697 375504 1.49 381201 49 5783 375306 1.52 381089 50 6464 360639 1.76 367103 51 5432 360388 1.48 365820 52 5764 360477 1.57 366241 53 5323 347940 1.51 353263 54 5095 343559 1.46 348654 55 5135 343069 1.47 348204 56 5113 336547 1.50 341660 57 5042 335609 1.48 340651 58 4897 331462 1.46 336359 59 4898 326686 1.48 331584 60 4843 321583 1.48 326426 61 4758 316425 1.48 321183 62 4619 309230 1.47 313849 63 4633 306471 1.49 311104 64 4653 305890 1.50 310543 65 4275 296652 1.42 300927 66 4200 289202 1.43 293402 67 4184 287102 1.44 291286 68 4021 283229 1.40 287250 69 4164 277100 1.48 281264 70 3944 271112 1.43 275056 71 3850 264647 1.43 268497 72 3789 260502 1.43 264291 73 3697 253270 1.44 256967 74 3641 245448 1.46 249089 75 3484 239006 1.44 242490 76 3481 233435 1.47 236916 77 3318 220359 1.48 223677 78 2975 202706 1.45 205681 79 2550 162732 1.54 165282 80 1158 71814 1.59 72972 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47984 18233 72.46 66217 2 41380 14124 74.55 55504 3 37810 12861 74.62 50671 4 35128 11941 74.63 47069 5 34747 11404 75.29 46151 6 33744 11310 74.90 45054 7 33754 11697 74.26 45451 8 32611 10753 75.20 43364 9 31669 10300 75.46 41969 10 32033 10435 75.43 42468 11 31787 10125 75.84 41912 12 30242 9681 75.75 39923 13 30537 9569 76.14 40106 14 29656 9464 75.81 39120 15 29237 8941 76.58 38178 16 28500 8908 76.19 37408 17 27576 8917 75.57 36493 18 26473 8359 76.00 34832 19 26170 8029 76.52 34199 20 25188 7953 76.00 33141 21 24632 7746 76.08 32378 22 24104 7486 76.30 31590 23 23546 7425 76.03 30971 24 23125 7133 76.43 30258 25 23062 7119 76.41 30181 26 21957 6959 75.93 28916 27 21181 6620 76.19 27801 28 20856 6371 76.60 27227 29 20051 6214 76.34 26265 30 19469 6128 76.06 25597 31 19311 6088 76.03 25399 32 18617 5824 76.17 24441 33 18129 5812 75.72 23941 34 18113 5830 75.65 23943 35 17471 5362 76.52 22833 36 16759 5019 76.95 21778 37 16200 5155 75.86 21355 38 15826 5046 75.82 20872 39 15774 4984 75.99 20758 40 15536 4810 76.36 20346 41 14490 4674 75.61 19164 42 13907 4465 75.70 18372 43 13889 4217 76.71 18106 44 13642 4217 76.39 17859 45 13058 4114 76.04 17172 46 12737 4229 75.07 16966 47 12560 4080 75.48 16640 48 12020 3838 75.80 15858 49 11619 3776 75.47 15395 50 11352 3696 75.44 15048 51 10742 3373 76.10 14115 52 10687 3449 75.60 14136 53 10525 3366 75.77 13891 54 10159 3288 75.55 13447 55 9963 3145 76.01 13108 56 9830 3172 75.60 13002 57 9436 3058 75.52 12494 58 9172 3055 75.01 12227 59 8823 2799 75.92 11622 60 8359 2774 75.08 11133 61 8349 2764 75.13 11113 62 7958 2654 74.99 10612 63 7882 2605 75.16 10487 64 7797 2427 76.26 10224 65 7415 2354 75.90 9769 66 6974 2315 75.08 9289 67 6973 2319 75.04 9292 68 6704 2207 75.23 8911 69 6572 2135 75.48 8707 70 6425 2112 75.26 8537 71 6382 2023 75.93 8405 72 5923 2127 73.58 8050 73 5769 2037 73.90 7806 74 5702 1973 74.29 7675 75 5409 1771 75.33 7180 76 5155 1783 74.30 6938 77 4949 1648 75.02 6597 78 4530 1618 73.68 6148 79 3907 1412 73.45 5319 80 2545 957 72.67 3502 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3209 108744 2.87 111953 2 1845 87673 2.06 89518 3 1656 84519 1.92 86175 4 1287 78191 1.62 79478 5 1453 74130 1.92 75583 6 1406 73090 1.89 74496 7 1118 72480 1.52 73598 8 1162 72010 1.59 73172 9 1034 68236 1.49 69270 10 1119 66377 1.66 67496 11 1052 64705 1.60 65757 12 960 63619 1.49 64579 13 942 61192 1.52 62134 14 939 59837 1.55 60776 15 952 59929 1.56 60881 16 914 58319 1.54 59233 17 869 55734 1.54 56603 18 841 55479 1.49 56320 19 817 53675 1.50 54492 20 802 51309 1.54 52111 21 804 50820 1.56 51624 22 735 48406 1.50 49141 23 806 48171 1.65 48977 24 784 47531 1.62 48315 25 719 45265 1.56 45984 26 717 43791 1.61 44508 27 626 43913 1.41 44539 28 640 42468 1.48 43108 29 666 41979 1.56 42645 30 594 39921 1.47 40515 31 595 39187 1.50 39782 32 582 38002 1.51 38584 33 600 37484 1.58 38084 34 558 35919 1.53 36477 35 523 34588 1.49 35111 36 551 33986 1.60 34537 37 522 32335 1.59 32857 38 492 31565 1.53 32057 39 504 31534 1.57 32038 40 462 30630 1.49 31092 41 488 29878 1.61 30366 42 455 28489 1.57 28944 43 456 28063 1.60 28519 44 391 26691 1.44 27082 45 395 26615 1.46 27010 46 391 25816 1.49 26207 47 398 24727 1.58 25125 48 373 24240 1.52 24613 49 346 23763 1.44 24109 50 355 22935 1.52 23290 51 319 22522 1.40 22841 52 292 21746 1.32 22038 53 335 20745 1.59 21080 54 299 20625 1.43 20924 55 284 20093 1.39 20377 56 293 19411 1.49 19704 57 297 19568 1.50 19865 58 251 18352 1.35 18603 59 269 17878 1.48 18147 60 255 17631 1.43 17886 61 284 17073 1.64 17357 62 245 16358 1.48 16603 63 237 16017 1.46 16254 64 239 15467 1.52 15706 65 240 15194 1.56 15434 66 209 14955 1.38 15164 67 246 14147 1.71 14393 68 225 13539 1.63 13764 69 210 13269 1.56 13479 70 211 13291 1.56 13502 71 199 12784 1.53 12983 72 188 12493 1.48 12681 73 193 12041 1.58 12234 74 199 11571 1.69 11770 75 181 11560 1.54 11741 76 179 10836 1.63 11015 77 167 10222 1.61 10389 78 147 9471 1.53 9618 79 118 8124 1.43 8242 80 83 5434 1.50 5517 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8306 332321 2.44 340627 2 5939 257553 2.25 263492 3 4707 238094 1.94 242801 4 3957 223563 1.74 227520 5 4009 212139 1.85 216148 6 3568 202755 1.73 206323 7 3002 197172 1.50 200174 8 2824 191149 1.46 193973 9 2704 188900 1.41 191604 10 2689 185916 1.43 188605 11 2557 176821 1.43 179378 12 2463 171887 1.41 174350 13 2389 169366 1.39 171755 14 2400 163218 1.45 165618 15 2353 160942 1.44 163295 16 2245 158854 1.39 161099 17 2189 151881 1.42 154070 18 2142 150402 1.40 152544 19 2159 147498 1.44 149657 20 2111 142368 1.46 144479 21 2093 139710 1.48 141803 22 1986 135091 1.45 137077 23 2057 131495 1.54 133552 24 1899 128451 1.46 130350 25 1861 125425 1.46 127286 26 1841 121429 1.49 123270 27 1845 120290 1.51 122135 28 1726 117056 1.45 118782 29 1663 113251 1.45 114914 30 1750 110917 1.55 112667 31 1580 110695 1.41 112275 32 1610 105629 1.50 107239 33 1529 102325 1.47 103854 34 1498 100921 1.46 102419 35 1444 98311 1.45 99755 36 1433 95996 1.47 97429 37 1463 94812 1.52 96275 38 1378 91217 1.49 92595 39 1345 89324 1.48 90669 40 1281 87889 1.44 89170 41 1247 85355 1.44 86602 42 1216 82741 1.45 83957 43 1178 81102 1.43 82280 44 1162 78228 1.46 79390 45 1125 75812 1.46 76937 46 1107 75109 1.45 76216 47 1053 73286 1.42 74339 48 1065 72185 1.45 73250 49 1038 70993 1.44 72031 50 952 67394 1.39 68346 51 942 66035 1.41 66977 52 917 65337 1.38 66254 53 940 61659 1.50 62599 54 846 60128 1.39 60974 55 862 59359 1.43 60221 56 820 57542 1.41 58362 57 837 57042 1.45 57879 58 820 54624 1.48 55444 59 784 54083 1.43 54867 60 760 51591 1.45 52351 61 738 50394 1.44 51132 62 686 48676 1.39 49362 63 696 47651 1.44 48347 64 739 47382 1.54 48121 65 699 45319 1.52 46018 66 641 43492 1.45 44133 67 608 43500 1.38 44108 68 619 42730 1.43 43349 69 716 41477 1.70 42193 70 594 39996 1.46 40590 71 548 38656 1.40 39204 72 595 38075 1.54 38670 73 543 36805 1.45 37348 74 537 35331 1.50 35868 75 472 34205 1.36 34677 76 540 33309 1.60 33849 77 466 31800 1.44 32266 78 431 29331 1.45 29762 79 341 25516 1.32 25857 80 270 17011 1.56 17281