File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr2096_10_s1_R1_val_1_bismark_bt2_pe.bam	17448883	3589133	11875220	1984530	0	148497	3440636	60999626	6819051	2077910	225305	13890217	619709	37367434
zr2096_1_s1_R1_val_1_bismark_bt2_pe.bam	28603346	2302830	24953237	1347279	0	72478	2230352	39610515	4262217	1132294	121896	8785918	373166	24935024
zr2096_2_s1_R1_val_1_bismark_bt2_pe.bam	30325606	5902757	20848282	3574566	1	352744	5550013	84517743	9427156	2561796	271268	19763996	838898	51654629
zr2096_3_s1_R1_val_1_bismark_bt2_pe.bam	29548753	6150617	19650356	3747780	0	349765	5800852	102150544	12815986	2515171	326140	23373619	875233	62244395
zr2096_4_s1_R1_val_1_bismark_bt2_pe.bam	23970516	5198840	15690210	3081466	0	165220	5033620	77932605	7773253	2720600	237616	17753002	732930	48715204
zr2096_5_s1_R1_val_1_bismark_bt2_pe.bam	31503281	6219368	21809764	3474149	0	368499	5850869	96605990	9593092	3141103	342331	21368806	1027003	61133655
zr2096_6_s1_R1_val_1_bismark_bt2_pe.bam	23909493	5131970	15685955	3091568	0	183661	4948309	77647178	8757761	1950354	236078	17635336	714406	48353243
zr2096_7_s1_R1_val_1_bismark_bt2_pe.bam	29273635	5566738	20689666	3017231	0	219653	5347085	92519366	9731682	2516381	345132	20714887	999433	58211851
zr2096_8_s1_R1_val_1_bismark_bt2_pe.bam	29483218	5167109	21488098	2828011	0	250978	4916131	81886486	7710965	2681620	300605	18415677	928128	51849491
zr2096_9_s1_R1_val_1_bismark_bt2_pe.bam	31847541	6036617	22269593	3541331	0	818091	5218526	90345021	10966031	2192935	354330	20397321	968298	55466106