Alignment Stats
| Sequences analysed in total |
38697189 |
| Single-end alignments with a unique best hit |
12100337 |
| Sequences without alignments under any condition |
11378609 |
| Sequences that did not map uniquely |
15218243 |
| Genomic sequence context not extractable (edges of chromosomes) |
10261 |
|
|
Cytosine Methylation
| Total C's analysed |
74300289 |
| Methylated C's in CpG context |
10570191 |
| Methylated C's in CHG context |
337701 |
| Methylated C's in CHH context |
4071416 |
| Methylated C's in Unknown context |
2038 |
| Unmethylated C's in CpG context |
1613143 |
| Unmethylated C's in CHG context |
14787632 |
| Unmethylated C's in CHH context |
42920206 |
| Unmethylated C's in Unknown context |
13522 |
| Percentage methylation (CpG context) |
86.8% |
| Percentage methylation (CHG context) |
2.2% |
| Percentage methylation (CHH context) |
8.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
2680074 |
original top strand |
| CTOT |
3383610 |
complementary to original top strand |
| CTOB |
3361667 |
complementary to original bottom strand |
| OB |
2664725 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
12090076 |
| Unique alignments |
8537033 |
| Duplicates removed |
3553043 |
| Duplicated alignments were found at 1455924 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
51677627 |
| Methylated C's in CpG context |
6649597 |
| Methylated C's in CHG context |
247967 |
| Methylated C's in CHH context |
3261945 |
| Unmethylated C's in CpG context |
1131323 |
| Unmethylated C's in CHG context |
9857922 |
| Unmethylated C's in CHH context |
30528873 |
| Percentage methylation (CpG context) |
85.5% |
| Percentage methylation (CHG context) |
2.5% |
| Percentage methylation (CHH context) |
9.7% |
|
|
M-Bias Plot
|
