Alignment Stats
| Sequences analysed in total |
46105140 |
| Single-end alignments with a unique best hit |
14905949 |
| Sequences without alignments under any condition |
13855099 |
| Sequences that did not map uniquely |
17344092 |
| Genomic sequence context not extractable (edges of chromosomes) |
12908 |
|
|
Cytosine Methylation
| Total C's analysed |
89997267 |
| Methylated C's in CpG context |
11472605 |
| Methylated C's in CHG context |
410681 |
| Methylated C's in CHH context |
5226271 |
| Methylated C's in Unknown context |
2218 |
| Unmethylated C's in CpG context |
2334664 |
| Unmethylated C's in CHG context |
18029891 |
| Unmethylated C's in CHH context |
52523155 |
| Unmethylated C's in Unknown context |
15400 |
| Percentage methylation (CpG context) |
83.1% |
| Percentage methylation (CHG context) |
2.2% |
| Percentage methylation (CHH context) |
9.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3323802 |
original top strand |
| CTOT |
4149123 |
complementary to original top strand |
| CTOB |
4116561 |
complementary to original bottom strand |
| OB |
3303555 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
14893041 |
| Unique alignments |
10344013 |
| Duplicates removed |
4549028 |
| Duplicated alignments were found at 1976360 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
61756286 |
| Methylated C's in CpG context |
7131612 |
| Methylated C's in CHG context |
297938 |
| Methylated C's in CHH context |
4106610 |
| Unmethylated C's in CpG context |
1653180 |
| Unmethylated C's in CHG context |
11820461 |
| Unmethylated C's in CHH context |
36746485 |
| Percentage methylation (CpG context) |
81.2% |
| Percentage methylation (CHG context) |
2.5% |
| Percentage methylation (CHH context) |
10.1% |
|
|
M-Bias Plot
