Alignment Stats
| Sequences analysed in total |
46792286 |
| Single-end alignments with a unique best hit |
14613325 |
| Sequences without alignments under any condition |
13908254 |
| Sequences that did not map uniquely |
18270707 |
| Genomic sequence context not extractable (edges of chromosomes) |
13389 |
|
|
Cytosine Methylation
| Total C's analysed |
88932661 |
| Methylated C's in CpG context |
11765630 |
| Methylated C's in CHG context |
420023 |
| Methylated C's in CHH context |
5013472 |
| Methylated C's in Unknown context |
2315 |
| Unmethylated C's in CpG context |
2476805 |
| Unmethylated C's in CHG context |
17514384 |
| Unmethylated C's in CHH context |
51742347 |
| Unmethylated C's in Unknown context |
15939 |
| Percentage methylation (CpG context) |
82.6% |
| Percentage methylation (CHG context) |
2.3% |
| Percentage methylation (CHH context) |
8.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
3305147 |
original top strand |
| CTOT |
4025896 |
complementary to original top strand |
| CTOB |
3988767 |
complementary to original bottom strand |
| OB |
3280126 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
14599936 |
| Unique alignments |
10263164 |
| Duplicates removed |
4336772 |
| Duplicated alignments were found at 1757896 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
61540104 |
| Methylated C's in CpG context |
7261799 |
| Methylated C's in CHG context |
303140 |
| Methylated C's in CHH context |
3988762 |
| Unmethylated C's in CpG context |
1790508 |
| Unmethylated C's in CHG context |
11577501 |
| Unmethylated C's in CHH context |
36618394 |
| Percentage methylation (CpG context) |
80.2% |
| Percentage methylation (CHG context) |
2.6% |
| Percentage methylation (CHH context) |
9.8% |
|
|
M-Bias Plot
|
