[2025-02-12 19:05:31,517] multiqc [DEBUG ] This is MultiQC v1.14 [2025-02-12 19:05:31,518] multiqc [DEBUG ] Found command line config: {'sp': {'fastp': {'fn': '*report.json'}}} [2025-02-12 19:05:31,519] multiqc [DEBUG ] Added to filename patterns: [{'fastp': {'fn': '*report.json'}}] [2025-02-12 19:05:31,519] multiqc [DEBUG ] Command used: /home/sam/programs/mambaforge/bin/multiqc . --cl-config sp: { fastp: { fn: '*report.json' } } --interactive [2025-02-12 19:05:32,442] multiqc [WARNING] MultiQC Version v1.27 now available! [2025-02-12 19:05:32,442] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/F-Ptua/output/01.00-F-Ptua-WGBS-trimming-fastp-FastQC-MultiQC [2025-02-12 19:05:32,442] multiqc [DEBUG ] Template : default [2025-02-12 19:05:32,442] multiqc [DEBUG ] Running Python 3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:08:06) [GCC 11.3.0] [2025-02-12 19:05:32,443] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umitools, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, cellranger, snpsplit, odgi, pangolin, nextclade, humid, kat, leehom, adapterRemoval, bbduk, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-02-12 19:05:32,444] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp3ci291sc [2025-02-12 19:05:32,957] multiqc [INFO ] Search path : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/F-Ptua/output/01.00-F-Ptua-WGBS-trimming-fastp-FastQC-MultiQC [2025-02-12 19:05:37,647] multiqc [DEBUG ] Summary of files that were skipped by the search: [skipped_module_specific_max_filesize: 992] // [skipped_no_match: 256] // [skipped_ignore_pattern: 128] [2025-02-12 19:05:38,625] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.7.1 [2025-02-12 19:05:38,633] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.7.1 [2025-02-12 19:05:38,634] multiqc [DEBUG ] No samples found: custom_content [2025-02-12 19:05:38,642] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-53-TP3_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,667] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-40-TP1_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,680] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-255-TP2_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,688] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-255-TP3_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,694] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-222-TP1_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,699] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-57-TP4_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,703] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-259-TP2_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,707] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-53-TP4_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,711] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-219-TP3_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,714] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-42-TP4_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,716] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-40-TP4_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,719] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-52-TP3_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,726] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-201-TP1_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,733] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-40-TP2_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,737] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-42-TP2_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,742] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-201-TP2_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,745] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-52-TP1_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,749] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-222-TP3_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,752] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-52-TP4_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,754] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-57-TP1_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,757] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-219-TP2_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,759] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-57-TP2_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,763] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-255-TP1_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,766] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-219-TP4_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,769] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-57-TP3_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,772] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-219-TP1_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,774] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-259-TP1_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,777] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-53-TP2_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,779] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-52-TP2_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,782] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-222-TP4_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,784] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-40-TP3_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,787] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-53-TP1_R1_001.fastp-trim.report.json [2025-02-12 19:05:38,787] multiqc.modules.fastp.fastp [INFO ] Found 32 reports [2025-02-12 19:05:46,029] multiqc.modules.fastqc.fastqc [INFO ] Found 64 reports [2025-02-12 19:05:46,916] multiqc [INFO ] Compressing plot data [2025-02-12 19:05:49,171] multiqc [INFO ] Report : multiqc_report.html [2025-02-12 19:05:49,171] multiqc [INFO ] Data : multiqc_data [2025-02-12 19:05:49,171] multiqc [DEBUG ] Moving data file from '/tmp/tmp3ci291sc/multiqc_data' to '/home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/F-Ptua/output/01.00-F-Ptua-WGBS-trimming-fastp-FastQC-MultiQC/multiqc_data' [2025-02-12 19:05:49,312] multiqc [INFO ] MultiQC complete