[2025-02-24 14:07:59,309] multiqc [DEBUG ] This is MultiQC v1.14 [2025-02-24 14:07:59,310] multiqc [DEBUG ] Found command line config: {'sp': {'fastp': {'fn': '*report.json'}}} [2025-02-24 14:07:59,310] multiqc [DEBUG ] Added to filename patterns: [{'fastp': {'fn': '*report.json'}}] [2025-02-24 14:07:59,310] multiqc [DEBUG ] Command used: /home/sam/programs/mambaforge/bin/multiqc . --cl-config sp: { fastp: { fn: '*report.json' } } --interactive [2025-02-24 14:08:00,168] multiqc [WARNING] MultiQC Version v1.27 now available! [2025-02-24 14:08:00,168] multiqc [DEBUG ] Working dir : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/F-Ptua/output/01.00-F-Ptua-RNAseq-trimming-fastp-FastQC-MultiQC [2025-02-24 14:08:00,168] multiqc [DEBUG ] Template : default [2025-02-24 14:08:00,168] multiqc [DEBUG ] Running Python 3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:08:06) [GCC 11.3.0] [2025-02-24 14:08:00,169] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umitools, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, cellranger, snpsplit, odgi, pangolin, nextclade, humid, kat, leehom, adapterRemoval, bbduk, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap [2025-02-24 14:08:00,169] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpuj8u1vuz [2025-02-24 14:08:00,637] multiqc [INFO ] Search path : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/F-Ptua/output/01.00-F-Ptua-RNAseq-trimming-fastp-FastQC-MultiQC [2025-02-24 14:08:08,297] multiqc [DEBUG ] Summary of files that were skipped by the search: [skipped_module_specific_max_filesize: 1097] // [skipped_no_match: 275] // [skipped_ignore_pattern: 157] [2025-02-24 14:08:09,268] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.7.1 [2025-02-24 14:08:09,270] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.7.1 [2025-02-24 14:08:09,271] multiqc [DEBUG ] No samples found: custom_content [2025-02-24 14:08:09,281] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-259-TP2.fastp-trim.report.json [2025-02-24 14:08:09,300] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-201-TP1.fastp-trim.report.json [2025-02-24 14:08:09,327] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-255-TP4.fastp-trim.report.json [2025-02-24 14:08:09,333] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-255-TP1.fastp-trim.report.json [2025-02-24 14:08:09,338] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-259-TP1.fastp-trim.report.json [2025-02-24 14:08:09,343] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-42-TP4.fastp-trim.report.json [2025-02-24 14:08:09,352] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-40-TP2.fastp-trim.report.json [2025-02-24 14:08:09,357] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-222-TP4.fastp-trim.report.json [2025-02-24 14:08:09,363] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-53-TP1.fastp-trim.report.json [2025-02-24 14:08:09,368] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-57-TP1.fastp-trim.report.json [2025-02-24 14:08:09,374] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-52-TP1.fastp-trim.report.json [2025-02-24 14:08:09,379] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-40-TP4.fastp-trim.report.json [2025-02-24 14:08:09,384] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-52-TP4.fastp-trim.report.json [2025-02-24 14:08:09,389] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-42-TP2.fastp-trim.report.json [2025-02-24 14:08:09,394] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-53-TP4.fastp-trim.report.json [2025-02-24 14:08:09,399] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-42-TP1.fastp-trim.report.json [2025-02-24 14:08:09,408] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-53-TP3.fastp-trim.report.json [2025-02-24 14:08:09,414] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-259-TP3.fastp-trim.report.json [2025-02-24 14:08:09,418] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-57-TP4.fastp-trim.report.json [2025-02-24 14:08:09,424] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-259-TP4.fastp-trim.report.json [2025-02-24 14:08:09,429] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-42-TP3.fastp-trim.report.json [2025-02-24 14:08:09,434] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-53-TP2.fastp-trim.report.json [2025-02-24 14:08:09,439] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-219-TP1.fastp-trim.report.json [2025-02-24 14:08:09,447] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-219-TP4.fastp-trim.report.json [2025-02-24 14:08:09,453] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-222-TP1.fastp-trim.report.json [2025-02-24 14:08:09,458] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-255-TP3.fastp-trim.report.json [2025-02-24 14:08:09,463] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-57-TP3.fastp-trim.report.json [2025-02-24 14:08:09,469] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-52-TP2.fastp-trim.report.json [2025-02-24 14:08:09,474] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-222-TP2.fastp-trim.report.json [2025-02-24 14:08:09,479] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-201-TP3.fastp-trim.report.json [2025-02-24 14:08:09,490] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-40-TP3.fastp-trim.report.json [2025-02-24 14:08:09,495] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-57-TP2.fastp-trim.report.json [2025-02-24 14:08:09,501] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-201-TP2.fastp-trim.report.json [2025-02-24 14:08:09,506] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-219-TP2.fastp-trim.report.json [2025-02-24 14:08:09,511] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-222-TP3.fastp-trim.report.json [2025-02-24 14:08:09,516] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-52-TP3.fastp-trim.report.json [2025-02-24 14:08:09,521] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-219-TP3.fastp-trim.report.json [2025-02-24 14:08:09,527] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-255-TP2.fastp-trim.report.json [2025-02-24 14:08:09,541] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: POC-40-TP1.fastp-trim.report.json [2025-02-24 14:08:09,542] multiqc.modules.fastp.fastp [INFO ] Found 39 reports [2025-02-24 14:08:21,700] multiqc.modules.fastqc.fastqc [INFO ] Found 78 reports [2025-02-24 14:08:23,122] multiqc [INFO ] Compressing plot data [2025-02-24 14:08:27,050] multiqc [INFO ] Report : multiqc_report.html [2025-02-24 14:08:27,050] multiqc [INFO ] Data : multiqc_data [2025-02-24 14:08:27,050] multiqc [DEBUG ] Moving data file from '/tmp/tmpuj8u1vuz/multiqc_data' to '/home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/F-Ptua/output/01.00-F-Ptua-RNAseq-trimming-fastp-FastQC-MultiQC/multiqc_data' [2025-02-24 14:08:27,213] multiqc [INFO ] MultiQC complete