Module	Section	Sample Name	Source
Bismark	alignment	1A5_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A5_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1D7_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1D7_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1C9_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1C9_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1A3_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A3_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1F5_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1F5_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1B2_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1B2_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	6--1E3_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/6--1E3_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1D3_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1D3_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	2D2_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2D2_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	2H3_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2H3_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1H6_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H6_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1B4_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1B4_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1B10_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1B10_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1F9_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1F9_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	2D1_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2D1_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1D8_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1D8_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1G5_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1G5_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1A6_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A6_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1C8_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1C8_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	10--1E7_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/10--1E7_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	2C2_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2C2_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1B1_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1B1_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	2G2_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2G2_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1G4_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1G4_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1D9_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1D9_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1C6_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1C6_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1A8_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A8_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1F1_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1F1_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1A1_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A1_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	2A3_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2A3_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1H9_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H9_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1H3_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H3_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1H2_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H2_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1A12_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A12_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1H5_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H5_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1A10_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A10_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1B5_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1B5_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1F7_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1F7_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	39--2E2_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/39--2E2_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bismark	alignment	1H11_R1_001	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H11_R1_001.fastp-trim_bismark_bt2_PE_report.txt
Bowtie 2 / HiSAT2	all_sections	1C9-16-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1C9-16-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1A8-8-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A8-8-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1D3-17-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1D3-17-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	2G2-37-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2G2-37-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1H6-31-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H6-31-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1A12-3-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A12-3-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1B5-13-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1B5-13-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1B10-9-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1B10-9-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	2A3-33-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2A3-33-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	39--2E2-39-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/39--2E2-39-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	2D2-36-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2D2-36-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1C6-14-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1C6-14-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1D9-20-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1D9-20-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1H11-27-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H11-27-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1H3-29-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H3-29-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	10--1E7-1-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/10--1E7-1-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1H9-32-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H9-32-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1F9-24-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1F9-24-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1A10-2-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A10-2-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1A6-7-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A6-7-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1D8-19-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1D8-19-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1H2-28-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H2-28-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	2C2-34-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2C2-34-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1A1-4-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A1-4-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	6--1E3-40-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/6--1E3-40-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1B4-12-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1B4-12-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1F5-22-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1F5-22-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1C8-15-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1C8-15-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1G4-25-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1G4-25-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1A3-5-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A3-5-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1A5-6-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1A5-6-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1F7-23-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1F7-23-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1G5-26-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1G5-26-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	2H3-38-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2H3-38-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1B2-11-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1B2-11-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1F1-21-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1F1-21-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	2D1-35-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/2D1-35-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1B1-10-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1B1-10-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1H5-30-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1H5-30-bismark_summary.txt
Bowtie 2 / HiSAT2	all_sections	1D7-18-bismark	/gscratch/srlab/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/02.20-D-Apul-WGBS-alignment-SLURM_array-bismark/1D7-18-bismark_summary.txt