Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000017l:7471118-7471210 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9532.ps.pdf
Locus Name: Cluster_9532
GACUUUUUCUGGUUAAGAAAUGGACAAAGGCUCCAAGCAAAUGUUUAUCAUUUGCUAGUUGCUUUUGUCCCGUUCUUAAACUAGAUAUUCAUA
.......((((((((((((..((((((((((..(.((((((((.....)))))))).)..))))))))))..))))).)))))))........ (-37.60)
..CUUUUUCUGGUUAAGAAA......................................................................... len:18 al:1
...............AGAAAUGGACAAAGGCUCCAAGCAAAUGU................................................. len:29 al:1
....................UGGACgAAGGCUCCAAGCAAAUG.................................................. len:23 al:2
....................UGGACAAAGGCUCCAAGCAAAUu.................................................. len:23 al:2
....................UGGACAAAGGCUCCAAGCAAAUGU................................................. len:24 al:18
....................UGGACAAAGGCUCCAAGa....................................................... len:18 al:1
....................UGGACAAAGGCUCCuAGCAAAU................................................... len:22 al:1
....................UGGACAAAGGCUCCAAGCAAAUGg................................................. len:24 al:1
....................UGGACAAAGGCUCCAAGu....................................................... len:18 al:1
....................UGGACAAAGGCUCCAAGCAA..................................................... len:20 al:2
....................UGGACAAAGGCUCCAAGuAAAUG.................................................. len:23 al:5
....................UGGACAAAGGCUCCgAGCAAAUG.................................................. len:23 al:4
....................UGGACAAAGGCUCCAAGCAAA.................................................... len:21 al:4
....................UGGACAAAaGCUCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAgGGCUCCAAGCAAAUG.................................................. len:23 al:2
....................UGGACAAAGGCUCCAAGCAAAcG.................................................. len:23 al:1
....................UGGACAAAGGCUCCAAGCAAAgG.................................................. len:23 al:2
....................UGGACAAAGGCUCCAAGCA...................................................... len:19 al:4
....................UGGACAAAGGCUCCAAGCAAAUc.................................................. len:23 al:1
....................UGGACAAAGGCUCCAAGCAgAUG.................................................. len:23 al:3
....................UGGACAAAGGCUCCAuGCAAAUG.................................................. len:23 al:1
....................UGGcCAAAGGCUCCAAGCAAAU................................................... len:22 al:1
....................UGGACAAAGGCUCCAAGC....................................................... len:18 al:14
....................UGGcCAAAGGCUCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGGCUCCAAGCAAAa................................................... len:22 al:1
....................cGGACAAAGGCUCCAAGCAAAUG.................................................. len:23 al:5
....................UGGACAAAGGCUCCAAGCAAAU................................................... len:22 al:27
....................UGGACAAuGGCUCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGGCUCCAgGCAAAUG.................................................. len:23 al:3
....................UGGACAAAGGCUCCAAGCAAAUG.................................................. len:23 al:522
....................UGGACAAAGGCcCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGGCUCCAAGCAAAaGU................................................. len:24 al:1
....................UGGACAcAGGCUCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAcGGCUCCAAGCAAAUG.................................................. len:23 al:2
....................UGGACAAAGGCUCCAAGCAAAc................................................... len:22 al:1
....................UGGACAAAGGCUCCAAGCAAAUa.................................................. len:23 al:18
....................UGGgCAAAGGCUCCAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGGCUCuAAGCAAAUG.................................................. len:23 al:1
....................UGGACAAAGaCUCCAAGCAAAUG.................................................. len:23 al:1
.....................uGACAAAGGCUCCAAGCAAAUG.................................................. len:22 al:1
.....................GGACAAAGGCUCCAAGCAAAUG.................................................. len:22 al:1
..........................................GUUUAUCAUUUGCUAGUUGCUUUUGUCCCa..................... len:30 al:1
..........................................GUUUAUCAUUUGCUAGUUGCUUUUGUCCCGc.................... len:31 al:4
..........................................GUUUAUCAUUUGCUgGUUGCUUUUGUCCCGU.................... len:31 al:1
..........................................GUUUAUCAUUUGCUAGUUGCUUUUGUCCCGa.................... len:31 al:1
..........................................GUUUAUCAUUUGCUAGUUGCUUUUGUCCCGU.................... len:31 al:6
...........................................UUUAUCAUUUaCUAGUUGCUUUUGUCCCGU.................... len:30 al:1
...........................................UUUAUCAUUUGCUAGUUGCUUUUGUCCCGU.................... len:30 al:1
.................................................cUUUGCUAGUUGCUUUUGUCCCGU.................... len:24 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCGa.................... len:23 al:42
..................................................UUUGCUAGUUGCUUUUGUCCCGUUaUU................ len:27 al:2
..................................................UUUGCUAGUUGCUUUUGUCCCuU.................... len:23 al:4
..................................................cUUGCUAGUUGCUUUUGUCCCGU.................... len:23 al:8
..................................................UUUGCUAGUUGCUUUUGUCCC...................... len:21 al:12
..................................................UUUGCUAGUUGCUUUUGUCCCGUg................... len:24 al:3
..................................................UUUGCUAGUUGCUUUUGUuCCGU.................... len:23 al:3
..................................................UUUGCUcGUUGCUUUUGUCCCGU.................... len:23 al:4
..................................................UUUGCUAGUUGCcUUUGUCCCGU.................... len:23 al:9
..................................................UUUGCUAGUUGCUUcUGUCCCGU.................... len:23 al:4
..................................................UUUGCUAGUUGCUUUUGUCCCcU.................... len:23 al:11
..................................................UUUGCUAGUUGCUUUUGUCCCGU.................... len:23 al:1590
..................................................UUUGCUAGUUGCUcUUGUCCC...................... len:21 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCGc.................... len:23 al:382
..................................................UcUGCUAGUUGCUUUUGUCCCGUU................... len:24 al:1
..................................................UUUGCUAGUUGCUUUUGcCCCGUU................... len:24 al:2
..................................................UUUGCUAGUUGCUUUUGUCCCGcU................... len:24 al:54
..................................................UUUGCUAGUUGCUcUUGUCCCGU.................... len:23 al:7
..................................................UUUGCUAGUUGCUUUUGUCCCu..................... len:22 al:7
..................................................UUUGCUAGUUGCUUUUGUCCCGUUu.................. len:25 al:22
..................................................UUUGCUAGUUGCUUUUGUCCaGU.................... len:23 al:7
..................................................UUUGCUAGUcGCUUUUGUCCCGU.................... len:23 al:4
..................................................UUUGCUAGcUGCUUUUGUCCCGU.................... len:23 al:7
..................................................UUUGCUAGUUGCUUUUGUCCCGUUC.................. len:25 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCG..................... len:22 al:46
..................................................UcUGCUAGUUGCUUUUGUCCCGU.................... len:23 al:6
..................................................UUUGCUAGUUGCUUUUGUCCCuUU................... len:24 al:2
..................................................UUUaCUAGUUGCUUUUGUCCCGU.................... len:23 al:2
..................................................UUUGCUAGUUGCUUUUGUCa....................... len:20 al:7
..................................................UUUGCUAGUUGCUUUUGUCCCGUUuUU................ len:27 al:2
..................................................UUUGCUAGcUGCUUUUGUCCCGUU................... len:24 al:2
..................................................UUUGCUAGUUGCUUUUGUCCCGcUC.................. len:25 al:2
..................................................UUUGCUAGUUGCUUUgGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGUUGCUUUUGUCCa...................... len:21 al:2
..................................................UUUGCUgGUUGCUUUUGUCCCGUU................... len:24 al:2
..................................................UUUGCUAGUUGCUUUUGUCCCc..................... len:22 al:2
..................................................UUUGCUgGUUGCUUUUGUCCC...................... len:21 al:1
..................................................UUUGCUAGUcGCUUUUGUCC....................... len:20 al:1
..................................................UUUGCUAGUUaCUUUUGUCCCGU.................... len:23 al:2
..................................................UUUGCUAGUUGCUUUUGUCCCGUc................... len:24 al:17
..................................................UUUGCUgGUUGCUUUUGUCCCGU.................... len:23 al:10
..................................................UUUGCUAuUUGCUUUUGUCCCGU.................... len:23 al:2
..................................................UUUGCUAGUUGCUUUUGUCCCGUUa.................. len:25 al:2
..................................................UaUGCUAGUUGCUUUUGUCCCGU.................... len:23 al:1
..................................................UUcGCUAGUUGCUUUUGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGUUGgUUUUGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGUUGCUcUUGUCCCGUU................... len:24 al:1
..................................................UUUGCUAGUUGCUUUUGUCC....................... len:20 al:33
..................................................UUUGCUAGUUGCUUUUGcCCCGU.................... len:23 al:9
..................................................UUUGCUAGUUGCUUUUGUC........................ len:19 al:5
..................................................cUUGCUAGUUGCUUUUGUCCCGUU................... len:24 al:1
..................................................gUUGCUAGUUGCUUUUGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGUUGCcUUUGUCCCGUU................... len:24 al:1
..................................................UUUGCUAGUUGCUUUcGUCCCGU.................... len:23 al:5
..................................................UUUGCUAGUcGCUUUUGUCCCG..................... len:22 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCGUU................... len:24 al:232
..................................................UUUGCUAGUUGCUUUUGUCuCGU.................... len:23 al:3
..................................................UUUGCUAGUUGCUUUUGUCCCGg.................... len:23 al:30
..................................................UUUGCUAGUUGCUUUUGUCu....................... len:20 al:9
..................................................UUUGCUAGUUGCUUUUGaCCCGU.................... len:23 al:2
..................................................UUUGCcAGUUGCUUUUGUCCCGU.................... len:23 al:4
..................................................UUUGCUAGUUGCUUUUGUCCCGUa................... len:24 al:19
..................................................UUUGCUAGUUGCUUUUGUCCCa..................... len:22 al:6
..................................................UUUGuUAGUUGCUUUUGUCCCGUU................... len:24 al:1
..................................................UUUGCUAaUUGCUUUUGUCCCGU.................... len:23 al:1
..................................................UUUGCUAGUUGCUUUUGUCCCaU.................... len:23 al:5
..................................................UUUGCUAGUUGCUUUUGUCCCGUUuU................. len:26 al:6
...................................................UUGCUAGUUGCUUUUGUCCCGUaC.................. len:24 al:1
...................................................UUGCUAGUUGCUUUUGUCCCGcU................... len:23 al:6
...................................................UUGCUAGUUGCUUUUGUCCCGU.................... len:22 al:19
...................................................UUGCUAGUUGCUUUUGUCCCu..................... len:21 al:1
...................................................UUGCUAGUUGCUUUUGUCCCGUUu.................. len:24 al:1
...................................................UUGCUAGUUGCUUUUGUCCCGUc................... len:23 al:1
...................................................UUGCUAGUUGCUUUUGUCCCGUa................... len:23 al:1
...................................................UUGCUAGUUGCUUUUGUCCCG..................... len:21 al:6
...................................................UUGCUAGUUGCUUUUGUCCCGa.................... len:22 al:2
...................................................UUGCUAGUUGCUUUUGUCCCGUU................... len:23 al:17
...................................................UUGCUAGUUGCUUUUGUCCCGc.................... len:22 al:8
....................................................UGCUAGUUGCUUUUGUCCCGa.................... len:21 al:2
....................................................UGCUAGUUGCUUUUGUCCCGc.................... len:21 al:3
....................................................UGCUAGUUGCUUcUGUCCCGU.................... len:21 al:1
....................................................UGCUAGUUGCUUUUGUCCCGUU................... len:22 al:1
....................................................UGCUAGUUGCUUUUGUCCCGU.................... len:21 al:9
....................................................UGCUAGUUGCUUUUGUCCCG..................... len:20 al:1
.....................................................uCUAGUUGCUUUUGUCCCGU.................... len:20 al:2
......................................................CUAGUUGCUUUUGUCCCGUa................... len:20 al:1
.......................................................UAGUUGCUUUUGUCCCGU.................... len:18 al:1