Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000016l:11751358-11751448 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9420.ps.pdf
Locus Name: Cluster_9420
CCUGACGGGCUCUGGGAGUGAGUGCACUUUUCUCAGGAUGAAUUGAAUUCUUCUUGAGAAAAUUUCACCCACUCCUGGAACCAAUGAGAAU
.((.(..((.((((((((((.(((...(((((((((((.((((...)))).)))))))))))...))).)))))))))).))..).))... (-39.80)
CCUGACaGGCUCUGGGAGUG....................................................................... len:20 al:13
CCUGACGGGCUCUGGGAGUG....................................................................... len:20 al:32
CCUGACGGGCUCUGGGAGUa....................................................................... len:20 al:1
.CUGACGGGCUCUGGGAGU........................................................................ len:18 al:5
.CUGACGGGCUCUGGGAGcG....................................................................... len:19 al:2
.uUGACGGGCUCUGGGAGUG....................................................................... len:19 al:1
.CUGACaGGCUCUGGGAGUG....................................................................... len:19 al:41
.CUGACGGGCUCUGGGAGUG....................................................................... len:19 al:143
.CUGACGGGCcCUGGGAGUG....................................................................... len:19 al:1
.CUGACGGGCUuUGGGAGUG....................................................................... len:19 al:1
.CUGACGGGCUCUGGGAGUa....................................................................... len:19 al:14
.CUGACGGGCUCUGGGAGUu....................................................................... len:19 al:1
.CUGACaGGCUCUGGGAGU........................................................................ len:18 al:5
..UGACGGGCUCUGGGAGUG....................................................................... len:18 al:275
..UGAaGGGCUCUGGGAGUG....................................................................... len:18 al:1
..UGACGGGCUCUGGGAGUa....................................................................... len:18 al:36
..UGACGGGCUCUGGGAGU........................................................................ len:17 al:5
..UGACGGGCUCUGGGAGcG....................................................................... len:18 al:3
..UGACGGGCUCUGGGgGUG....................................................................... len:18 al:1
..UGACaGGCUCUGGGAGUG....................................................................... len:18 al:33
..UGACGGGCUCUGGGAGUu....................................................................... len:18 al:4
..cGACGGGCUCUGGGAGUG....................................................................... len:18 al:1
..UGACGGGCUCUGGGAGUc....................................................................... len:18 al:3
..UGACGGGCcCUGGGAGUG....................................................................... len:18 al:1
...GACGGGCUCUGGGAGUGAa..................................................................... len:19 al:1
...................GAGUGCACUUUUCUCAGGAUGAAa................................................ len:24 al:1
...................cAGUGCACUUUUCUCAGGAUGA.................................................. len:22 al:3
...................cAGUGCACUUUUCUCAGGAUGAAU................................................ len:24 al:3
...................cAGUGCACUUUUCUCAGGA..................................................... len:19 al:1
....................AGUGCACUUUcCUCAGGAUGAA................................................. len:22 al:21
....................AGUcCACUUUUCUCAGGAUGAA................................................. len:22 al:1
....................uGUGCACUUUUCUCAGGAU.................................................... len:19 al:1
....................AuUGCACUUUUCUCAGGAUGA.................................................. len:21 al:3
....................AGUGCACUgUUCUCAGGAUGAAU................................................ len:23 al:1
....................AGUGgACUUUUCUCAGGAUGA.................................................. len:21 al:2
....................uGUGCACUUUUCUCAGGAUGA.................................................. len:21 al:10
....................AGUGCACUUUUCUCAGGAUGu.................................................. len:21 al:103
....................AGUGCACUUUUCUCAGGAUGAAUg............................................... len:24 al:6
....................AGUGCACUUUUCUCgGGA..................................................... len:18 al:2
....................AGUGCACUUUUCUCAGGAUu................................................... len:20 al:39
....................AGUGCACUUUUCUCAGGg..................................................... len:18 al:1
....................AGUGCACUUcUCUCAGGAUGAAU................................................ len:23 al:2
....................AGUGCACUUcUCUCAGGAU.................................................... len:19 al:5
....................AGUaCACUUUUCUCAGGAUG................................................... len:20 al:1
....................AGUuCACUUUUCUCAGGAUGA.................................................. len:21 al:3
....................AGUGCACUUUUCUCgGGAUG................................................... len:20 al:11
....................AGUGCgCUUUUCUCAGGAUG................................................... len:20 al:7
....................AaUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:1
....................gGUGCACUUUUCUCAGGAUG................................................... len:20 al:9
....................AGUGCACUUUUCUCcGGAUG................................................... len:20 al:3
....................AGUGCACUcUUCUCAGGAUGAAUU............................................... len:24 al:1
....................AGUGCACUUUUCUCAGGAUGAAa................................................ len:23 al:766
....................AGUGCACUUUUCUCuGGAUG................................................... len:20 al:2
....................AGUGCACUUUUCUCAGGAUGAAUUGAAUUC......................................... len:30 al:1
....................AGUGCACUUUUCUCuGGAU.................................................... len:19 al:2
....................gGUGCACUUUUCUCAGGA..................................................... len:18 al:1
....................AGUGCuCUUUUCUCAGGAUGA.................................................. len:21 al:2
....................AGUGCACUUUUCUCAGGAU.................................................... len:19 al:2015
....................AGUGCACUUUUCUCAGuAUGAAU................................................ len:23 al:1
....................AGUGCACUUUUCUCAGGAUGgAU................................................ len:23 al:16
....................AGUGCACUUcUCUCAGGAUGAAUU............................................... len:24 al:1
....................AGUGCACUUUUCUuAGGAUGAA................................................. len:22 al:3
....................AGUGCACUUUUCUCAGGuUGAAU................................................ len:23 al:1
....................AGUGCACgUUUCUCAGGAUGAA................................................. len:22 al:1
....................cGUGCACUUUUCUCAGGAUGA.................................................. len:21 al:9
....................AGUGCACUUUUCUaAGGAUGAA................................................. len:22 al:4
....................AGUGCACUUUUCUCAGGAUGAAUa............................................... len:24 al:51
....................AGUGCACUUUUCcCAGGAU.................................................... len:19 al:8
....................AGUGCACUUUUCUCAGGgU.................................................... len:19 al:9
....................AGUGCgCUUUUCUCAGGA..................................................... len:18 al:1
....................AGUGCACUUUUCUCAGGAcGA.................................................. len:21 al:7
....................AGUGuACUUUUCUCAGGAUGA.................................................. len:21 al:17
....................AGUGCACUUUUuUCAGGA..................................................... len:18 al:1
....................AGcGCACUUUUCUCAGGAUGA.................................................. len:21 al:27
....................AGUGCACUUUUCcCAGGA..................................................... len:18 al:1
....................AGUGCACUUUUCUCAGGAUG................................................... len:20 al:2130
....................AGUGCACUUUUCUCcGGAUGA.................................................. len:21 al:2
....................AGUGCAaUUUUCUCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAGGcUGAA................................................. len:22 al:1
....................AGcGCACUUUUCUCAGGAUGAA................................................. len:22 al:22
....................AGUGCgCUUUUCUCAGGAUGAAUU............................................... len:24 al:1
....................AGUGCACUUUUCUaAGGAUG................................................... len:20 al:1
....................AGUGCACUUUUCUCAGGAUGg.................................................. len:21 al:104
....................AGUaCACUUUUCUCAGGAUGA.................................................. len:21 al:9
....................AGUGCACUUcUCUCAGGAUG................................................... len:20 al:1
....................AGUGCACUUUUCUCAGGA..................................................... len:18 al:445
....................AGUGCACUUUUCcCAGGAUG................................................... len:20 al:6
....................AGUGCACUcUUCUCAGGAUG................................................... len:20 al:4
....................AGUGCACUgUUCUCAGGAUGA.................................................. len:21 al:2
....................gGUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:15
....................AGUGCAaUUUUCUCAGGAUGA.................................................. len:21 al:1
....................AGUGCACUcUUCUCAGGAUGAA................................................. len:22 al:21
....................AGUGCACUUUUCUCAGGAUGAAUUu.............................................. len:25 al:7
....................AGUGCACcUUUCUCAGGAU.................................................... len:19 al:11
....................AGUGCACUUUUgUCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAGGAUGc.................................................. len:21 al:9
....................AGUGCACUUUUCaCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAGGAUGAA................................................. len:22 al:6298
....................AGUGCACUUUUCUuAGGAUGA.................................................. len:21 al:5
....................AGUGCACUaUUCUCAGGAU.................................................... len:19 al:2
....................AGUGCACUUUUCUCAaGAUGAA................................................. len:22 al:2
....................AGUcCACUUUUCUCAGGAUGAAU................................................ len:23 al:2
....................AGUGCACUUUgCUCAGGAUGA.................................................. len:21 al:1
....................AGUGCACcUUUCUCAGGAUGA.................................................. len:21 al:46
....................AGUGCACUUUUCcCAGGAUGA.................................................. len:21 al:21
....................AGUGCACUUUaCUCAGG...................................................... len:17 al:1
....................AGUGCACUUUUCUCAGa...................................................... len:17 al:2
....................AuUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:1
....................AGUGCACUUUUCUCgGGAUGAA................................................. len:22 al:31
....................AGUGCACUUUUCUCAGGAUGAAUUGAAUUCc........................................ len:31 al:1
....................AGUGCACUUUUCUCAGGAUGAuU................................................ len:23 al:42
....................AGUGCACUUUUCUCgGGAUGA.................................................. len:21 al:45
....................AGUGCACUUUUCUCAuGAUGAAU................................................ len:23 al:1
....................AGUGCACUUUUCUaAGGAUGAAUU............................................... len:24 al:1
....................AGUuCACUUUUCUCAGGAUGAAU................................................ len:23 al:1
....................AGUGCuCUUUUCUCAGGAU.................................................... len:19 al:1
....................AGUaCACUUUUCUCAGGA..................................................... len:18 al:6
....................AGUGCACUUUUCUCcGGAUGAA................................................. len:22 al:3
....................AGUGCACUUUUCUCAGGc..................................................... len:18 al:1
....................cGUGCACUUUUCUCAGGAU.................................................... len:19 al:4
....................AGUGCACUUUUCUCAaGAUG................................................... len:20 al:2
....................AGUGCACUUUUCUCAGGAUaAAU................................................ len:23 al:3
....................AGUGCACUUUUCUCAGGAUGAAUUa.............................................. len:25 al:1
....................AGUGCACUUUUCUCAGGgUGAAU................................................ len:23 al:13
....................AGUGCACUUUUuUCAGGAUG................................................... len:20 al:1
....................AaUGCACUUUUCUCAGGAUGA.................................................. len:21 al:8
....................AuUGCACUUUUCUCAGGAUG................................................... len:20 al:1
....................AGcGCACUUUUCUCAGGAUGAAU................................................ len:23 al:8
....................AGUGCACUUUUCgCAGGAUGAAU................................................ len:23 al:2
....................AGUGCACcUUUCUCAGGAUGAAU................................................ len:23 al:15
....................AGUGCACUUUUCUCAG....................................................... len:16 al:7
....................AGUGCACUUUUCUCAGGAgG................................................... len:20 al:5
....................AGUGCACUUUUCUCuGGAUGA.................................................. len:21 al:15
....................AGgGCACUUUUCUCAGGAUGA.................................................. len:21 al:1
....................AGUGCACUUUUCUCAGGgUGAA................................................. len:22 al:13
....................AGUGCACUUUUCUCAGGAUGcA................................................. len:22 al:3
....................AGUGuACUUUUCUCAGGAUG................................................... len:20 al:4
....................AGUGCACUUUUCUCAGGAUa................................................... len:20 al:155
....................AGUGCgCUUUUCUCAGGAUGAAU................................................ len:23 al:21
....................AGUGCACUUUUCUCAGGAUGAgU................................................ len:23 al:14
....................AGUGCACUUUcCUCAGGAU.................................................... len:19 al:4
....................AGUGCcCUUUUCUCAGGAUG................................................... len:20 al:1
....................AGUGCACUUcUCUCAGGA..................................................... len:18 al:1
....................AGUGCACUUUUCUCAGGcU.................................................... len:19 al:1
....................AuUGCACUUUUCUCAGGAUGAA................................................. len:22 al:5
....................AaUGCACUUUUCUCAGGAUGAA................................................. len:22 al:6
....................AGUGCACUUUUCUCgGGAU.................................................... len:19 al:19
....................AGUGCACUUUUCcCAGGAUGAAUU............................................... len:24 al:3
....................AGUGuACUUUUCUCAGGAUGAAU................................................ len:23 al:5
....................AGaGCACUUUUCUCAGGAUGAA................................................. len:22 al:3
....................AGUGCACUUUUCaCAGGAUG................................................... len:20 al:1
....................AGUGCACUUUUuUCAGGAU.................................................... len:19 al:1
....................AGUGCACcUUUCUCAGGAUG................................................... len:20 al:15
....................AGUGCACUUUcCUCAGGAUGA.................................................. len:21 al:20
....................uGUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:2
....................gGUGCACUUUUCUCAGGAUGAAUU............................................... len:24 al:1
....................AGUGCACUUUUCUCAGGAgGAAU................................................ len:23 al:1
....................AGUaCACUUUUCUCAGGAUGAA................................................. len:22 al:7
....................AGUGCACUUUUCUCAGGgUG................................................... len:20 al:3
....................AGUGCACUUUUCUCAGaAU.................................................... len:19 al:2
....................AGUGCcCUUUUCUCAGGAUGAA................................................. len:22 al:2
....................AGUGCACUUUUCUCAGGAUGuAU................................................ len:23 al:1
....................AGUGCACUUUUCUCAGGAUGAAUUuA............................................. len:26 al:1
....................AGUGCACUUUUCUCAGaAUGAAU................................................ len:23 al:2
....................AGUGCACUUUUCUCAGGAUGAAgU............................................... len:24 al:2
....................AGUGCACUUUUCUCAGGAg.................................................... len:19 al:13
....................AGUGCAuUUUUCUCAGGAUGAA................................................. len:22 al:8
....................AGUaCACUUUUCUCAGGAUGAAU................................................ len:23 al:4
....................AGUGCACUUUUCUCAGGAUuAA................................................. len:22 al:1
....................AGUGuACUUUUCUCAGGAUGAA................................................. len:22 al:8
....................AGUGCACUUUUCUCAGGAUGAAUc............................................... len:24 al:12
....................AGUGCACUUUUCUCAGaAUG................................................... len:20 al:1
....................AGUGCcCUUUUCUCAGGAU.................................................... len:19 al:1
....................gGUGCACUUUUCUCA........................................................ len:15 al:1
....................AGUGCACUUcUCUCAGGAUGAA................................................. len:22 al:11
....................AGUGCAuUUUUCUCAGGAUGA.................................................. len:21 al:5
....................uGUGCACUUUUCUCAGGAUGAA................................................. len:22 al:5
....................AGUGCACUUUcCUCAGGAUGAAU................................................ len:23 al:8
....................gGUGCACUUUUCUCAGGAU.................................................... len:19 al:8
....................AGUGCACUUUUgUCAGGAU.................................................... len:19 al:1
....................AGUGCACUUUUCcCAGGAUGAA................................................. len:22 al:22
....................AGUuCACUUUUCUCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUaUCAGGAUGA.................................................. len:21 al:4
....................cGUGCACUUUUCUCAGGAUGAA................................................. len:22 al:3
....................AGUGCACUUUUCUCAaGAUGA.................................................. len:21 al:1
....................AGUGCACUcUUCUCAGGAUGA.................................................. len:21 al:22
....................AGUGCACUUUUCUCAaGAUGAAUU............................................... len:24 al:1
....................AGUGCACUcUUCUCAGGAUGAAU................................................ len:23 al:9
....................AGUGCcCUUUUCUCAGGAUGA.................................................. len:21 al:6
....................AGUGCACUUUUCUCAGGAUuA.................................................. len:21 al:1
....................AGaGCACUUUUCUCAGGAUG................................................... len:20 al:1
....................AGUGCACUUUUCUCAGGAUGAc................................................. len:22 al:13
....................AGUGCACUUUUuUCAGGAUGAAU................................................ len:23 al:1
....................AGUaCACUUUUCUCAGGAUGAAUU............................................... len:24 al:1
....................AGUGCgCUUUUCUCAGGAUGAA................................................. len:22 al:33
....................AGUGCuCUUUUCUCAGGAUGAA................................................. len:22 al:2
....................AGUGCACUcUUCUCAGGAU.................................................... len:19 al:11
....................AGUGCACUUUUCUCAGGAUGuA................................................. len:22 al:6
....................AGUGCACUaUUCUCAGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAGGgUGA.................................................. len:21 al:18
....................AGUGCACUUUaCUCAGGAUGAAU................................................ len:23 al:1
....................AGUGCACUUUUCUCAGGAUc................................................... len:20 al:16
....................AGUGCACUUUUCUCAGGAUGA.................................................. len:21 al:8399
....................AGUGCACUUUUCUCAGGAUGAAg................................................ len:23 al:18
....................AGUGCACUUUUCUCAuGAUG................................................... len:20 al:1
....................AGUGCACUUUUCUCAGGAc.................................................... len:19 al:178
....................AGcGCACUUUUCUCAGGAU.................................................... len:19 al:9
....................AGUGCACUUUUCUCAGGcUGAAU................................................ len:23 al:1
....................AuUGCACUUUUCUCAGGAUGAAUU............................................... len:24 al:1
....................AGUGCACUUUUCUCAGu...................................................... len:17 al:1
....................AGUGCACUUUUCUCAGaAUGAA................................................. len:22 al:2
....................AGUGCACUUUUCUaAGGAUGAAU................................................ len:23 al:1
....................AGUGCACUUUUCUCuGGAUGAA................................................. len:22 al:1
....................AGUGCACUUUUCUCAGGAUGAAc................................................ len:23 al:227
....................AGUGCACcUUUCUCAGGAUGAA................................................. len:22 al:26
....................AGUGCACUUUUuUCAGGAUGA.................................................. len:21 al:2
....................AGUGCACUUUUCUCAGGAUGAAUUc.............................................. len:25 al:1
....................AGUGCACUUUUCUCAGGAUaA.................................................. len:21 al:12
....................AGUGCcCUUUUCUCAGGAUGAAU................................................ len:23 al:3
....................AGUGCACUUUUCUCAGGAUGAAUUGAAUUCU........................................ len:31 al:1
....................cGUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:1
....................AGUGCACUUUUCUCA........................................................ len:15 al:40
....................AGUGCACUUUUCUCAGGAgGA.................................................. len:21 al:4
....................AGUGCACcUUUCUCAGGAUGAAUU............................................... len:24 al:1
....................AGUGCACUUUUCUCAGGAUGgA................................................. len:22 al:31
....................AGUGCgCUUUUCUCAGGAUGA.................................................. len:21 al:23
....................AGUGgACUUUUCUCAGGAUGAA................................................. len:22 al:1
....................AGUGCgCUUUUCUCAGGAU.................................................... len:19 al:2
....................AGUGCACUUUUCUCAGGAUGAAcU............................................... len:24 al:1
....................AGUGCACUUUUCUCAGGAUGAuUU............................................... len:24 al:3
....................AGUGCACUUUUCgCAGGAUGA.................................................. len:21 al:3
....................AuUGCACUUUUCUCAGGAU.................................................... len:19 al:1
....................AGUGCACUUUUCUCAGGAUGAcU................................................ len:23 al:2
....................uGUGCACUUUUCUCAGGAUG................................................... len:20 al:3
....................AGUGCAuUUUUCUCAGGAUGAAU................................................ len:23 al:3
....................AGUGCACUUUUCUuAGGAUGAAU................................................ len:23 al:2
....................AGUGCACUUUUCUCAGGAgGAA................................................. len:22 al:1
....................AGUGCACUUUUCUaAGGAUGA.................................................. len:21 al:2
....................AGUGCACUUUUCUCAGGAUGAu................................................. len:22 al:113
....................AGUGCACUUUcCUCAGGA..................................................... len:18 al:1
....................AGUGCACUUUUCUCgGGAUGAAUU............................................... len:24 al:1
....................AGaGCACUUUUCUCAGGAUGA.................................................. len:21 al:1
....................gGUGCACUUUUCUCAGGAUGAA................................................. len:22 al:23
....................AGUGCACUaUUCUCAGGAUGAAU................................................ len:23 al:2
....................AGUGCACUUUUCUCAGGAUaAA................................................. len:22 al:3
....................AGUGCACUUUUCcCAGGAUGAAU................................................ len:23 al:10
....................AGUGCACUUUaCUCAGGAUG................................................... len:20 al:1
....................AGUGCACUUUUuUCAGGAUGAA................................................. len:22 al:1
....................AGcGCACUUUUCUCAGGAUG................................................... len:20 al:4
....................AGUGCACUUUUCUCAGaAUGA.................................................. len:21 al:2
....................AGUGCACUUUUCUCAGG...................................................... len:17 al:8
....................AGUGCACUUUUCUCgGGAUGAAU................................................ len:23 al:16
....................AGUGCACUUUUCUCAGGAa.................................................... len:19 al:18
....................AGUGCACUUUUCUCAGcA..................................................... len:18 al:1
....................AGUGCACUUUcCUCAGGAUG................................................... len:20 al:7
....................AGUGCACUUUUCUCAGGAUGAAUU............................................... len:24 al:205
....................AGUGaACUUUUCUCAGGAUG................................................... len:20 al:1
....................AGUGCACUUUUgUCAGGAUGA.................................................. len:21 al:3
....................AGUGCACUUUUCUCAGGAaG................................................... len:20 al:1
....................gGUGCACUUUUCUCAGGAUGA.................................................. len:21 al:38
....................AGUGCACUUUUCaCAGGAUGA.................................................. len:21 al:3
....................AGaGCACUUUUCUCAGGAU.................................................... len:19 al:1
....................AGUGCACUUaUCUCAGGAUG................................................... len:20 al:1
....................AGUGCACUUUaCUCAGGAUGA.................................................. len:21 al:3
....................AGUGuACUUUUCUCAGGAU.................................................... len:19 al:4
....................AaUGCACUUUUCUCAGGAU.................................................... len:19 al:4
....................AGUGCACUUUUCUCAGGAcGAAU................................................ len:23 al:10
....................AGUGCACaUUUCUCAGGAUGAAU................................................ len:23 al:2
....................AGUGCACUUUUCUCAGGAUGAAU................................................ len:23 al:3247
....................AGUGCACUUUUCUCAaGAUGAAU................................................ len:23 al:3
....................AGUGaACUUUUCUCAGGAUGA.................................................. len:21 al:2
....................AGUGCACUUcUCUCAGGAUGA.................................................. len:21 al:18
....................AGUGCACUUUUCUCAGGAUcA.................................................. len:21 al:6
....................AGUGCACUUUUCUCAGGAcGAA................................................. len:22 al:9
....................AGUGCACUUUUCUCAGGAcG................................................... len:20 al:20
....................AGUGCACUUUUCUCAGGAUGAg................................................. len:22 al:41
.....................GUGCACUUUUCUCAGGAUG................................................... len:19 al:9
.....................GUGCACUUUUCUCAGGAUGAAU................................................ len:22 al:8
.....................GUGCACUUUUCUCAGGAUGAAa................................................ len:22 al:2
.....................GUGCACUUUUCUCAGGAU.................................................... len:18 al:9
.....................GUGCACUUUUCUCAGGgUGAA................................................. len:21 al:1
.....................GUGCACUUUUCUCAGGAUGgA................................................. len:21 al:1
.....................GUGCACUUUUCUCAGGAUGAu................................................. len:21 al:2
.....................GUGCACUUUUCUCAGGAUGu.................................................. len:20 al:1
.....................GcGCACUUUUCUCAGGAUGA.................................................. len:20 al:1
.....................GUGCACUUUUCUCAGGAUGA.................................................. len:20 al:13
.....................GUGCACUcUUCUCAGGAUG................................................... len:19 al:1
.....................GUGCACUUUUCUCAGGAUGAA................................................. len:21 al:29
......................UGCACUUUUCUgAGGAUG................................................... len:18 al:1
......................UGCACUUUUCUCAGGAUGAAa................................................ len:21 al:1
......................UGCACUUUUCUCAGGAUGc.................................................. len:19 al:1
......................UGCACUUUUCUCAGGAUGAu................................................. len:20 al:1
......................UGCACUUUUCUCAGGAUGAA................................................. len:20 al:44
......................UGCACUUUUCUCAGGAUGgA................................................. len:20 al:1
......................UGCACUUUUCUCAGGAUGAAUU............................................... len:22 al:2
......................UGCACUUUUCUCAGGAUGAAU................................................ len:21 al:21
......................UGCACUcUUCUCAGGAUGA.................................................. len:19 al:1
......................UGCACUUUUCcCAGGAUGAA................................................. len:20 al:1
......................UGCACUUUUCUCAGGAUGA.................................................. len:19 al:34
......................UGCACUUUUCUCAGGAUGAAUUGAAUUCUU....................................... len:30 al:1
......................UGCACUUUUCUCAGGAUGAg................................................. len:20 al:1
......................UGCACUUUcCUCAGGAUGA.................................................. len:19 al:1
......................UaCACUUUUCUCAGGAUGAA................................................. len:20 al:1
......................UaCACUUUUCUCAGGAUGA.................................................. len:19 al:1
......................UGCACUUUUCUCAGGAU.................................................... len:17 al:3
......................UGCACUUUUCUCAGGAUa................................................... len:18 al:3
......................UGCACUUUUCUCAGGAUG................................................... len:18 al:8
........................CACUUUUCUCAGGAUGAA................................................. len:18 al:1
...........................UUUUCUCAGGAUGAAUUu.............................................. len:18 al:1
........................................AAUUGAAUUCUUCUUGAGAAAAUUUCgCCCA.................... len:31 al:1
........................................AAUUGAAUUCUUCUUGAGAAAAUUUCACCCA.................... len:31 al:1
.........................................AUUGAAUUCUUCUUGAGAAAAUUUCACCCAC................... len:31 al:1
..........................................UUGAAUUCUUCUUGAGAAAAUUUCACCCA.................... len:29 al:1
..............................................AUUCUUCUUGAGAAAAUUUCACCCA.................... len:25 al:1
................................................UCUUCUUGAGAAAAUUUCACu...................... len:21 al:1
.................................................CUUCUUGAGgAAAUUUCACCCA.................... len:22 al:1
.................................................CUUCUUGAGAAAAUUUCAuCCA.................... len:22 al:6
.................................................CUUCUUGAGAAAAUUUCACa...................... len:20 al:1
.................................................CUUCUUGAGAAAAUUUCACCu..................... len:21 al:6
.................................................CUUCUUGAGAAAAUUUCgCCCA.................... len:22 al:1
.................................................CUUCUUGAGAAAAUUUCACu...................... len:20 al:1
.................................................CUUCUUGAGAAAAUUUCACCC..................... len:21 al:23
.................................................CUUCUUGAGAAAAUUUCACCCc.................... len:22 al:5
.................................................CUUCUUGAGAAAAUUUCACCa..................... len:21 al:2
.................................................CUcCUUGAGAAAAUUUCACCCA.................... len:22 al:2
.................................................CUUCUUGAGAAAAUUUCACCCu.................... len:22 al:3
.................................................CUUCUUGAGAAAAUUUCACCaA.................... len:22 al:1
.................................................CUUCUUGAGAAAAUUUCACCCAuU.................. len:24 al:5
.................................................CUUCUUGAGAAAAUUUCACC...................... len:20 al:6
.................................................CUUCUUGAGAAAAUUUCACCCACc.................. len:24 al:1
.................................................CUUCUUGAGAAAAUUUCACCCAu................... len:23 al:16
.................................................CUUCcUGAGAAAAUUUCACCCA.................... len:22 al:1
.................................................CUUCUUGAGAAAAUUUCA........................ len:18 al:1
.................................................CUUCUUGAGAAAAUUUCACCCACU.................. len:24 al:3
.................................................CUUCUUGAGAAAAUUUCACCCg.................... len:22 al:6
.................................................CUUCUUGAGAAAAUUUCACCCA.................... len:22 al:183
..................................................UUCUUGAGAAAcUUUCACCCA.................... len:21 al:1
..................................................UUCUUGAGAAAAUUUCACCCAu................... len:22 al:2
..................................................UUCUUGAGAAAAUUUCACCCc.................... len:21 al:1
..................................................UUCUUGAGAAAAUUUCACCCACU.................. len:23 al:2
..................................................UUCUUGAGAAAAUUUCACCCA.................... len:21 al:3
...................................................UCUUGAGAAAAUUUCACCCACc.................. len:22 al:1
...................................................UCUUGAGAAAAUUUCACCCA.................... len:20 al:2
...................................................UCUUGAGAAAAUUUCACCCg.................... len:20 al:1
..................................................................ACCCACUCCUGGuACCA........ len:17 al:1
...................................................................CCCACUCCUGGuACCA........ len:16 al:4
.......................................................................CUCCUGGAACCAAUGAGA.. len:18 al:1