Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000016l:7795508-7795602 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_9366.ps.pdf
Locus Name: Cluster_9366
UAGAAAAUGUGGGAUGAGUGCCUGGGUGUCAUCUAUUAUGUUUUUGCUUGUUAAAACAUAAAAGAUGGCACCAGACAUUCAUCUCAAAAACUUGG
.........(((((((((((.((((.((((((((.(((((((((........))))))))).)))))))))))).)))))))))))......... (-41.10)
UAGAAAAUGUGGGAUGAGUGCC......................................................................... len:22 al:9
.AGAAAAUGUGGGAUGAGUGCu......................................................................... len:21 al:2
.AGAAAAUGUGGGAUGAGUGCa......................................................................... len:21 al:1
.AGAAAAUGUGGGAUGAGUGCC......................................................................... len:21 al:3
..GAAAAUGUGGGAUGAGUGCC......................................................................... len:20 al:8
..GAAAAUGUGGGAUGAaUGCC......................................................................... len:20 al:1
..GAAAAUGUGGGAUGAGUGCa......................................................................... len:20 al:1
..GAAAAUGUGGGAUGAGUGCu......................................................................... len:20 al:2
..GAgAAUGUGGGAUGAGUGCC......................................................................... len:20 al:1
...AAAAUGUGGGAUGAGUGCu......................................................................... len:19 al:17
...gAAAUGUGGGAUGAGUGCC......................................................................... len:19 al:1
...AAAAUGUGGGAUGAGUGCC......................................................................... len:19 al:39
...AAAAUGUGGGAUGAGUGa.......................................................................... len:18 al:2
...AAAAUGUGGGAUGAGUGCa......................................................................... len:19 al:4
....AAAUGUGGGAUGAGUGCa......................................................................... len:18 al:4
....AAAUGUGGGAUGAGUGCC......................................................................... len:18 al:36
....AAAUGUGGGAUGAGUGCu......................................................................... len:18 al:13
.....AAUGUGGGAUGAGUGCu......................................................................... len:17 al:1
.....AAUGUGGGAUGAGUGCa......................................................................... len:17 al:1
.....................CUGGGUGUCAUCUAUUAUGUUUU................................................... len:23 al:6
......................UGGGUGUCAcCUAUUAUGUUUU................................................... len:22 al:20
......................UGGGUGUCcUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAaCUAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGUUUcU.................................................. len:23 al:1
......................UGGGgGUCAUCUAUUAUGUUUU................................................... len:22 al:3
......................UGGGUGUCAUCUAUUAUGUUa.................................................... len:21 al:9
......................UGGGUGUCAUCcAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGcGUCAUCUAUUAUGUUU.................................................... len:21 al:2
......................UGGuUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:3
......................UGGGUGUCgUCUAUUAUGUUUU................................................... len:22 al:48
......................UGGGUGUCAUCUAUUA......................................................... len:16 al:1
......................UGGGUGUCcUCUAUUAUGUUUU................................................... len:22 al:10
......................UGGGUGUCgUCUAUUAUGUUU.................................................... len:21 al:2
......................UGGGUGUCAUCUAaUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUcAUGUUUU................................................... len:22 al:20
......................UGGGUGUCAUCUAUUAUGUUUc................................................... len:22 al:420
......................UGGGUGUCAUCUAUUAUGcUUUU.................................................. len:23 al:2
......................UuGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGUUU.................................................... len:21 al:508
......................UGGGUGUCAUCUAcUAUGUUUU................................................... len:22 al:21
......................UGGGUGUCAUCUAUUAcG....................................................... len:18 al:2
......................UGGaUGUCAUCUAUUAUGUUUU................................................... len:22 al:15
......................UGGGUGUCAUCUAgUAUGUUUU................................................... len:22 al:1
......................UGGGUGUCAUCUAUUAUGUgU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUGa...................................................... len:19 al:4
......................UGGGUGUCAUCcAUUAUGUUUU................................................... len:22 al:13
......................UGGGUGcCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGaGUGUCAUCUAUUAUGUUUU................................................... len:22 al:11
......................UGGGUGUCAUCUgUUAUGUUUU................................................... len:22 al:20
......................gGGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUAUGUUg.................................................... len:21 al:2
......................UGGGUaUCAUCUAUUAUGUUUU................................................... len:22 al:6
......................UGGGUGUCAUCUcUUAUGUUUU................................................... len:22 al:9
......................UGGGUGUCAUCUAUUAUGUUUaU.................................................. len:23 al:17
......................UGGGUGUCAUCUAUUAUGUUc.................................................... len:21 al:34
......................UGGGcGUCAUCUAUUAUGUUUUU.................................................. len:23 al:2
......................UGGGaGUCAUCUAUUAUGUUUU................................................... len:22 al:8
......................UGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:9294
......................UGGGUGcCAUCUAUUAUGU...................................................... len:19 al:1
......................UGGGUGUCAUCaAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUa....................................................... len:18 al:3
......................UaGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:6
......................UGGGUGUCAUCUAUUAUGUUUUUa................................................. len:24 al:5
......................UGGGUGcCAUCUAUUAUGUUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUGgUUU................................................... len:22 al:2
......................UGGGUGUCAcCUAUUAUGU...................................................... len:19 al:1
......................UGGGUGUCAUCUAcUAUGUUU.................................................... len:21 al:1
......................aGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:10
......................UGGGUGUCAUCUAUUgUGUUUU................................................... len:22 al:27
......................UGGGUGUCAUCUAUUAUGUgUU................................................... len:22 al:4
......................UGGGUGUCAUCUAUUAUGUcUU................................................... len:22 al:12
......................UGGGUaUCAUCUAUUAUGUUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUGUU..................................................... len:20 al:187
......................UGGGUGUCAUCUuUUAUGUUUU................................................... len:22 al:1
......................UGGGUGUCAUCUAUUAUGU...................................................... len:19 al:176
......................UGGGUGUCAUCUAUUcUGUUUU................................................... len:22 al:4
......................UGGGUGUCAUCUAUaAUGUUUU................................................... len:22 al:5
......................UGGGUGUCgUCUAUUAUGUU..................................................... len:20 al:2
......................UGGGUGaCAUCUAUUAUGUUUU................................................... len:22 al:5
......................UGGGUGUCAUCUAUUAaGUUUU................................................... len:22 al:2
......................UGGGcGUCAUCUAUUAUGUUUU................................................... len:22 al:26
......................UGGGUGUCAUCUAUUAUGgUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAcUAUGUUUUU.................................................. len:23 al:2
......................UGGGUGUCAUCUAUUAUGUUUUUu................................................. len:24 al:29
......................UGGGUGUCAUCUAUUAUGUUUa................................................... len:22 al:129
......................UGGGUGcCAUCUAUUAUGUUUU................................................... len:22 al:29
......................UGGGUGUCAUCUAUUAU........................................................ len:17 al:1
......................UGGGUGUCAUCUAUUAUGUcU.................................................... len:21 al:2
......................UGGGUGaCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUAUGUUUUa.................................................. len:23 al:265
......................UGGGUGUCAUCUAUUAUuUUUU................................................... len:22 al:2
......................UGGGUGUCAgCUAUUAUGUUUU................................................... len:22 al:1
......................UGGGUGUCAUCUAUUAUGg...................................................... len:19 al:3
......................UGGGUGUCAUCUAUUAUaUUUU................................................... len:22 al:1
......................UGGGUGUCAUCUcUUAUGU...................................................... len:19 al:1
......................UGGGUGUCAUCUAUUAUGc...................................................... len:19 al:19
......................UGGGUGUCcUCUAUUAUGU...................................................... len:19 al:1
......................UGGGUGUCAUCUAUaAUGUUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAcGUUUU................................................... len:22 al:29
......................UGGGUGUCAcCUAUUAUGUUUUU.................................................. len:23 al:2
......................UuGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUaUAUUAUGUUUU................................................... len:22 al:3
......................cGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:22
......................UGGGUGUCAUCUAUUAUGUUUUUc................................................. len:24 al:1
......................UGGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:669
......................UGGGUGUCAUCUAUUAUcUUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUGUUcU................................................... len:22 al:24
......................UGGGUGUCAUCUAUUAUGcUU.................................................... len:21 al:2
......................UGGGUGUCAUCUAUUAUGcU..................................................... len:20 al:1
......................UGGGUGUCAUCUAUUAUGUUUUUGCUUGUU........................................... len:30 al:2
......................UGGGUGUCAUCUAUUAUGUUUUUGCUUGU............................................ len:29 al:3
......................UGGGUGUCAUCUAUUAUGUUUg................................................... len:22 al:24
......................UGGGUGUCgUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUgUGUUU.................................................... len:21 al:2
......................UaGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:3
......................UGGGUGUCAUCUAUUAUGUa..................................................... len:20 al:2
......................UGGGUGUCAUCUAUUAUG....................................................... len:18 al:44
......................UGGGcGUCAUCUAUUAUGU...................................................... len:19 al:1
......................UGGGUGUCuUCUAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCcUCUAUUAUGUU..................................................... len:20 al:1
......................UGGGUGUCAUuUAUUAUGUUUU................................................... len:22 al:4
......................UGGGUGUCAUCUAUUAUGUUaU................................................... len:22 al:11
......................UGGGUGUCAUCUAUUAUGUaUU................................................... len:22 al:1
......................UGGGUGUCAUCUAUUAUGUUgU................................................... len:22 al:6
......................UGGGUGUCAUCUAUUAUGUc..................................................... len:20 al:18
......................UGGGUGUCAcCUAUUAUGUU..................................................... len:20 al:3
......................UGGGUGUCAUCUAUU.......................................................... len:15 al:13
......................UGaGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUuAUCUAUUAUGUUUU................................................... len:22 al:17
......................UGGGUGUCAUCUAUUAUGUg..................................................... len:20 al:1
......................cGGGUGUCAUCUAUUAUGUUU.................................................... len:21 al:1
......................UGGGaGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................gGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:2
......................UGGaUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:2
......................UGGGUGUCAUCUAUUAUGUUUUc.................................................. len:23 al:24
......................UGGGUGUCAUCUAUUAUGcUUU................................................... len:22 al:12
......................UGGGUuUCAUCUAUUAUGUUUU................................................... len:22 al:2
......................UGGuUGUCAUCUAUUAUGUUUU................................................... len:22 al:2
.......................GGGUGUCAUCUAUUAUGUUUU................................................... len:21 al:1
.......................uGGUGUCAUCUAUUAUGUUUU................................................... len:21 al:3
.........................GUGUCAUCUAUUAUGUUUU................................................... len:19 al:1
..........................................UUUGCUUGUUAAAACAUAAAAGAUGGCACCA...................... len:31 al:2
............................................UGCUUGUUAAAACAUAAAAGAUGGCACCAGA.................... len:31 al:1
............................................UGCUUGUUAAAACAUAAAAGAUGGCACuAGA.................... len:31 al:2
.............................................GCUUGUUAAAACAUAAAAGAUGGCACuAGA.................... len:30 al:1
.............................................GCUUGUUAAAACAUAAAAGAUGGCACCAG..................... len:29 al:1
...............................................UUGUUAAAACAUAAAAGAUGGCACuAGA.................... len:28 al:1
...................................................UAAAACAUAAAAGAUGGCACu....................... len:21 al:1
.....................................................AAACAUAAAAGAUGGCACCAGc.................... len:22 al:1
......................................................AACAUAAAAGAUGGCACCAGu.................... len:21 al:49
......................................................AACAUAAAAGAUGGCACCAGg.................... len:21 al:2
......................................................AACAUAAAAGAUGGCACC....................... len:18 al:59
......................................................AACAUAAAAGAUGGuACCA...................... len:19 al:1
......................................................AACAUAAAAGAUGGCACCAGA.................... len:21 al:51
......................................................AACAUAAAAGAUGGCACCAGACu.................. len:23 al:6
......................................................AACAUAAAAGAUGGCACCAGAuAUU................ len:25 al:1
......................................................AACAUAAAAGAUGGCACCAGACc.................. len:23 al:1
......................................................AACAUAAAAGAUGGCACCuG..................... len:20 al:1
......................................................AACAUAAAAGAUGGCACu....................... len:18 al:201
......................................................AACAUAAAAGAUGGCACCAGAa................... len:22 al:1
......................................................AACAUAAAAGAUGGCACuAG..................... len:20 al:61
......................................................AACAUAAAAGAUGGCACCAGc.................... len:21 al:5
......................................................AACAUAAAAaAUGGCACCAGA.................... len:21 al:1
......................................................AACAUAAAAGAUGGCACCAGAC................... len:22 al:1
......................................................AACAUAAAAGAUGGCACa....................... len:18 al:7
......................................................AACAUAAAAGAcGGCACC....................... len:18 al:1
......................................................AACAUAAAAGAUGGCACCAG..................... len:20 al:12
......................................................AACAUAAAAGAUGGCACCAGAu................... len:22 al:25
......................................................AACAUAAAAGAUGGCACCAGACg.................. len:23 al:1
......................................................AACAUAAAAGAUGGCACuAGA.................... len:21 al:268
......................................................gACAUAAAAGAUGGCACCAG..................... len:20 al:1
......................................................AACAUAAAAGAUGGCACCAGAuA.................. len:23 al:7
......................................................AACAUAAAAGAUGGCACuAGACA.................. len:23 al:5
......................................................AACAUAAAAGAUGGCACg....................... len:18 al:1
......................................................AACAUAAAAGAUGGCACCA...................... len:19 al:2
......................................................AACAUAAAAGAUGGCACCAGACA.................. len:23 al:1
......................................................AACAUAAAAGAUGGCgCC....................... len:18 al:1
......................................................AcCAUAAAAGAUGGCACC....................... len:18 al:1
......................................................AACAUAAAAGAUGGCACuAGAC................... len:22 al:12
......................................................AACAUAAAAGAUGGCACuA...................... len:19 al:5
.......................................................ACAUAAAAGAUGGCACuAGA.................... len:20 al:2
.......................................................ACAUAAAAGAUGGCACCAG..................... len:19 al:1
.........................................................AUAAAAGAUGGCACCAGAu................... len:19 al:1