Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam Location: ptg000017l:6374963-6375054 minus PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_9148.ps.pdf Locus Name: Cluster_9148 UUACCUGAUAACCUAUGUAGUAGGCGUAUUUCCGAUUGUCCUUUUACUACGACAACCGGAACUACGUCUGUCACGUAGGCUUAUACUGUUAU .......(((((((((((.(((((((((.(((((.(((((..........))))).))))).)))))))).)))))))).))))........ (-32.10) UUACCUGAUAACCUAUGUAG........................................................................ len:20 al:41 UUACCUGAUAACCUAUGc.......................................................................... len:18 al:1 UUACCUGAUAACCUAUGU.......................................................................... len:18 al:4 UUACCUGAUAACCUAUGUA......................................................................... len:19 al:2 UUACCUGAUAACCcAUGUAG........................................................................ len:20 al:1 UUACCUGAUAACCUAUGUAa........................................................................ len:20 al:3 UUACCUGAUgACCUAUGUAG........................................................................ len:20 al:1 UUgCCUGAUAACCUAUGUAG........................................................................ len:20 al:1 .UuCCUGAUAACCUAUGUAG........................................................................ len:19 al:1 .UACCUGAUgACCUAUGUAG........................................................................ len:19 al:2 .cACCUGAUAACCUAUGUAG........................................................................ len:19 al:1 .UACCUGAUAACCUAUGUAG........................................................................ len:19 al:177 .UACCUGAUAACCUAUGUgG........................................................................ len:19 al:2 .UACCUGAUAACCUAUGUAa........................................................................ len:19 al:9 ..ACCUGAUAACCUAUGUAa........................................................................ len:18 al:5 ..ACCUGAUAACCUAUGUAG........................................................................ len:18 al:62 ..ACCUGAUAACCUAUGUgG........................................................................ len:18 al:1 ..ACCUGAUAACCUAUGcAG........................................................................ len:18 al:1 ..ACCUGAUAACCcAUGUAG........................................................................ len:18 al:1 ..gCCUGAUAACCUAUGUAG........................................................................ len:18 al:1 ..................gGUAGGCGUAUUUCCGAUUGUC.................................................... len:22 al:1 ..................AGUAGGCGUAUUUCCGAUUGUCa................................................... len:23 al:8 ..................gGUAGGCGUAUUUCCGAUUGUCC................................................... len:23 al:2 ..................AGUAGGCGUAUUUCCGAUUGUCu................................................... len:23 al:1 ..................AGUAGGCGUAUUUCCGAUUGUC.................................................... len:22 al:18 ..................gGUAGGCGUAUUUCCGAUUGU..................................................... len:21 al:2 ..................AGUgGGCGUAUUUCCGAUUGUC.................................................... len:22 al:1 ..................AGUAGGCGUAUUUCCGAUUGUu.................................................... len:22 al:2 ..................AGUAGGCGUAUUUCCGAUUGUa.................................................... len:22 al:2 ...................cUAGGCGUAUUUCCGAUUGUC.................................................... len:21 al:3 ...................cUAGGCGUAUUUCCGAUUGUCC................................................... len:22 al:7 ...................GUAGGCGUAUUUCCGAUUGUCa................................................... len:22 al:9 ...................aUAGGCGUAUUUCCGAUUGUCC................................................... len:22 al:2 ...................GUAGGCGUAUUUCCGAUUGUCC................................................... len:22 al:3 ...................GUAGGCGUAUUUCCGAUUGUu.................................................... len:21 al:1 ...................GUAGGCGUAUUUCCGAUUGUC.................................................... len:21 al:25 ...................GUAGGCGUAUUUCCGAUUGU..................................................... len:20 al:3 ...................GUAGGCGUAUUUCCGAUUGa..................................................... len:20 al:1 ....................UcGGCGUAUUUCCGAUUGU..................................................... len:19 al:2 ....................UAGGCGUAUUUCCGAUUGUCCUUUUc.............................................. len:26 al:1 ....................UAGGCGUgUUUCCGAUUGUCC................................................... len:21 al:121 ....................UAuGCGUAUUUCCGAUUGUC.................................................... len:20 al:4 ....................UAGGCGUAUUUCCGgUUGUCC................................................... len:21 al:121 ....................UAGGCGUAUUUCuGAUUGUCCU.................................................. len:22 al:1 ....................UAGGCGUAUUaCCGAUUGUCCU.................................................. len:22 al:2 ....................UAGGCGUAUUUCCGAUUcU..................................................... len:19 al:1 ....................UAuGCGUAUUUCCGAUUGUCC................................................... len:21 al:14 ....................UAGGCGUAUUUCCGcUUGUCCU.................................................. len:22 al:1 ....................UAGGgGUAUUUCCGAUUGUCC................................................... len:21 al:12 ....................UAGuCGUAUUUCCGAUUGUC.................................................... len:20 al:9 ....................UAGGCGUAUUUCCGcUUGUCC................................................... len:21 al:32 ....................UAGGCGgAUUUCCGAUUGUCC................................................... len:21 al:2 ....................UAGGCGUAUUUCCGAUUGg..................................................... len:19 al:34 ....................UAGGCGUAUUUuCGAUUGUCC................................................... len:21 al:12 ....................UAGGCaUAUUUCCGAUUGUCCUU................................................. len:23 al:1 ....................UAGGCGUAUcUCCGAUUGUCCU.................................................. len:22 al:4 ....................UAGaCGUAUUUCCGAUUGUCCU.................................................. len:22 al:3 ....................UAGGCGUAUUUCCGcUUGU..................................................... len:19 al:2 ....................UAGuCGUAUUUCCGAUUGUCC................................................... len:21 al:11 ....................UgGGCGUAUUUCCGAUUG...................................................... len:18 al:1 ....................UAGGCGUAUUUCCGAUUGUCCaUU................................................ len:24 al:429 ....................UAGGCGUAUUUCCGAUUGUa.................................................... len:20 al:492 ....................UAGGCGUAUUUCCGAUUa...................................................... len:18 al:4 ....................UAGGCGUAUUUCCGAUUGUCCUUg................................................ len:24 al:7 ....................UAGGCGUAUUUCCGAUUGUCCUcU................................................ len:24 al:49 ....................UAGGCGUAUUUCCGAUUaUC.................................................... len:20 al:9 ....................UAGGCGUAcUUCCGAUUGUCCU.................................................. len:22 al:3 ....................UAGGCGUAgUUCCGAUUGUCC................................................... len:21 al:5 ....................UAGGCGUAUUUCCGAUUGcCCU.................................................. len:22 al:7 ....................UAGGuGUAUUUCCGAUUGUCCU.................................................. len:22 al:1 ....................UAGGCGaAUUUCCGAUUGU..................................................... len:19 al:1 ....................UAGGCGUAUUUCCGAUUGUCCa.................................................. len:22 al:2288 ....................UAGGCaUAUUUCCGAUUGU..................................................... len:19 al:2 ....................UAaGCGUAUUUCCGAUUGUCC................................................... len:21 al:33 ....................UAGGCGUAUUUCCGAUUGUCa................................................... len:21 al:10783 ....................UAGGCGUAUUaCCGAUUGUC.................................................... len:20 al:1 ....................UAGGCGUAUUUCCGAUUGUCCUUU................................................ len:24 al:165 ....................UAGGCGUAUUUCCGAUUGUCCUUc................................................ len:24 al:12 ....................UAGGCGUAUUUCCGAUUGUCCUUUa............................................... len:25 al:6 ....................UAGGCGUAUUUCCGAUUGU..................................................... len:19 al:2586 ....................UAGGgGUAUUUCCGAUUGUCCU.................................................. len:22 al:1 ....................UAGGCGUAUUUCCGAUgGUC.................................................... len:20 al:5 ....................UAGGCGUAUUUgCGAUUGUCC................................................... len:21 al:6 ....................gAGGCGUAUUUCCGAUUGU..................................................... len:19 al:1 ....................UAGGCGUAUUUCCGAUUGUCaU.................................................. len:22 al:162 ....................UAGGCGUAUUcCCGAUUGUCC................................................... len:21 al:182 ....................UAGGCGUAaUUCCGAUUGUCC................................................... len:21 al:13 ....................UAGGCGUAUUUCCGAUUGUCCUUUU............................................... len:25 al:27 ....................UAGGCGUAUUUCCGAUUGUuCUUU................................................ len:24 al:1 ....................UAGGCGUAUUUCCGAUgGUCC................................................... len:21 al:5 ....................UAGGCGUAUUUCCGAUUGUCCcUUU............................................... len:25 al:1 ....................UAGcCGUAUUUCCGAUUGUC.................................................... len:20 al:4 ....................UAGGCGUAUaUCCGAUUGUCC................................................... len:21 al:1 ....................UAGGCGUAUUUCCGAgUGUC.................................................... len:20 al:5 ....................UAGGCGUAUUUCCGAUUGUCCUUcU............................................... len:25 al:1 ....................UAGGCGUAUUUCCGAUUGUCCUUa................................................ len:24 al:21 ....................UAGGCGUAUUUCCaAUUGUCCU.................................................. len:22 al:1 ....................UAGGCGUAUUUCCGAUUGUCC................................................... len:21 al:56142 ....................UAGGCGUAUUUCCGAUUGaCC................................................... len:21 al:20 ....................UAGGCGUAUUUCCGAUUGcC.................................................... len:20 al:208 ....................UAGGCGUAUUUCCGAUUGUCCUcUU............................................... len:25 al:8 ....................UAGGCGUAUUUCCGAUUGUuCUU................................................. len:23 al:4 ....................UAGGCGUAUUUCCGuUUGUCC................................................... len:21 al:5 ....................UAGGCGUAUUUCCGAUUGUCCaU................................................. len:23 al:631 ....................UAGGCGUAUUUCCGAUUGc..................................................... len:19 al:266 ....................UAGaCGUAUUUCCGAUUGUC.................................................... len:20 al:9 ....................UAGGCGUAUUUCCGAU........................................................ len:16 al:5 ....................UAGGCGUAUUcCCGAUUGUCCUUU................................................ len:24 al:1 ....................UAGGCGUAUUUCgGAUUGUCC................................................... len:21 al:2 ....................UuGGCGUAUUUCCGAUUGUC.................................................... len:20 al:11 ....................UAGGCGUAUUUCCGAUaGUC.................................................... len:20 al:2 ....................UAGGCGUAUUUCCGAcUGUCC................................................... len:21 al:110 ....................UAGGCGUAUUUCCGAUUGUg.................................................... len:20 al:13 ....................UAGGCGUAgUUCCGAUUGU..................................................... len:19 al:1 ....................UgGGCGUAUUUCCGAUUGU..................................................... len:19 al:4 ....................UAGGCGUAUUUCCGAUUGUCuU.................................................. len:22 al:6 ....................UAGGCGUgUUUCCGAUUGUCCU.................................................. len:22 al:5 ....................UAGGCGUAUUUCCGAUUGUCCUUUg............................................... len:25 al:3 ....................gAGGCGUAUUUCCGAUUGUCCUUU................................................ len:24 al:2 ....................UAGGCGUAUUUCCGAUUG...................................................... len:18 al:51 ....................UAGGCGUAUUUCCuAUUGUCC................................................... len:21 al:6 ....................UAGGCGUAUUUCCGAUUGUu.................................................... len:20 al:1127 ....................UAGGCGUAUUUCCGAUUGUCCUgU................................................ len:24 al:1 ....................UAGGCGUAUUUCCaAUUGU..................................................... len:19 al:2 ....................UAGGCGUAUUUCCGAUUGUCCUUUUA.............................................. len:26 al:1 ....................UAGGCGUAUUUCCGAcUGU..................................................... len:19 al:1 ....................UAGGCGcAUUUCCGAUUGUCC................................................... len:21 al:101 ....................cAGGCGUAUUUCCGAUUGUCCU.................................................. len:22 al:1 ....................UAGGCGUAUUUCCGcUUGUC.................................................... len:20 al:6 ....................UAGGCGUAUcUCCGAUUGUC.................................................... len:20 al:37 ....................UAGGgGUAUUUCCGAUUGUC.................................................... len:20 al:2 ....................UAGGCGUAUUUCCGAUUGcCCUUU................................................ len:24 al:1 ....................UAGGCGUAUUUCCGAUcGUCCU.................................................. len:22 al:6 ....................UAGGCGUAUUUCCGuUUGUC.................................................... len:20 al:2 ....................UAGGCcUAUUUCCGAUUGUCC................................................... len:21 al:4 ....................UgGGCGUAUUUCCGAUUGUC.................................................... len:20 al:61 ....................UAGGCGUcUUUCCGAUUGU..................................................... len:19 al:4 ....................UAGcCGUAUUUCCGAUUGUCC................................................... len:21 al:2 ....................UuGGCGUAUUUCCGAUUGUCCUU................................................. len:23 al:1 ....................UAGGCGUAUUUCCGAUUGUuCU.................................................. len:22 al:35 ....................UAGGCGUAUUUCCGAUUGUCCUa................................................. len:23 al:20 ....................UAGGCGUAUUUCCGAUUGUCu................................................... len:21 al:13303 ....................UAGuCGUAUUUCCGAUUGUCCU.................................................. len:22 al:1 ....................UAGGCGUAUUUCCGAcUGUCCU.................................................. len:22 al:3 ....................gAGGCGUAUUUCCGAUUGUC.................................................... len:20 al:14 ....................UAGGCGUAUUUCCaAUUGUCC................................................... len:21 al:25 ....................UAGGCGUAUUUCCGAUUaUCC................................................... len:21 al:31 ....................UAGGCGUAUUUCCGAUUcUC.................................................... len:20 al:8 ....................UAGGCGUAUUUCCGAUUGUCCUUUUACUAC.......................................... len:30 al:9 ....................UAGGCGcAUUUCCGAUUGU..................................................... len:19 al:5 ....................UAGGCGUAUUcCCGAUUGUCCU.................................................. len:22 al:3 ....................UAGGCGUAcUUCCGAUUGUC.................................................... len:20 al:39 ....................UAGGCGUAUcUCCGAUUGU..................................................... len:19 al:12 ....................aAGGCGUAUUUCCGAUUGUC.................................................... len:20 al:1 ....................UAGGCGUAUUUCCGAUUGUCCUUUc............................................... len:25 al:3 ....................UAGGCGUAUUUCCGAUUGUCgU.................................................. len:22 al:1 ....................UAGGCGUAUUUCCGAUUGUCCUc................................................. len:23 al:91 ....................UuGGCGUAUUUCCGAUUGUCC................................................... len:21 al:29 ....................UAGGCGUAUUUCCGAUaGUCCU.................................................. len:22 al:1 ....................UAGGCGUgUUUCCGAUUGU..................................................... len:19 al:2 ....................UgGGCGUAUUUCCGAUUGUCC................................................... len:21 al:145 ....................UAuGCGUAUUUCCGAUUGU..................................................... len:19 al:1 ....................UAGGCGUAcUUCCGAUUGUCCUU................................................. len:23 al:1 ....................UAGGCGaAUUUCCGAUUGUC.................................................... len:20 al:1 ....................UAGGCGUAUUUCCGAUUGUCCaUUU............................................... len:25 al:22 ....................UAGGCGUcUUUCCGAUUGUC.................................................... len:20 al:13 ....................UgGGCGUAUUUCCGAUUGUCCU.................................................. len:22 al:4 ....................UAGGCGUgUUUCCGAUUG...................................................... len:18 al:1 ....................UAaGCGUAUUUCCGAUUGU..................................................... len:19 al:1 ....................UAGGCGUAUUUCCGgUUGUCCU.................................................. len:22 al:5 ....................UAGGaGUAUUUCCGAUUGUCCUUUU............................................... len:25 al:1 ....................UAGGCGUAUUUCCGAgUGUCC................................................... len:21 al:9 ....................UcGGCGUAUUUCCGAUUGUCCU.................................................. len:22 al:1 ....................UAGGCGcAUUUCCGAUUGUCCU.................................................. len:22 al:7 ....................UAGGuGUAUUUCCGAUUGUCC................................................... len:21 al:64 ....................gAGGCGUAUUUCCGAUUGUCC................................................... len:21 al:22 ....................UAGGCGUAUUUCCGcUUGUCCUUU................................................ len:24 al:1 ....................UAGGCGUAUUUCCGAUUGUCaUU................................................. len:23 al:43 ....................UAGGCGcAUUUCCGAUUGUC.................................................... len:20 al:29 ....................UAGGCGUAUUUCCGAUUGUCCUUUUu.............................................. len:26 al:8 ....................UAGGCGUAUUUCCGAUUGcCC................................................... len:21 al:183 ....................UAGGaGUAUUUCCGAUUGUC.................................................... len:20 al:3 ....................UAGGCGUAUUUCCGcUUGUCCUU................................................. len:23 al:1 ....................UAGGCGUAUcUCCGAUUGUCC................................................... len:21 al:112 ....................UAGGCGUAUUUCCGAUUGUCCUg................................................. len:23 al:6 ....................UAGaCGUAUUUCCGAUUGU..................................................... len:19 al:1 ....................UAGGCGUAUUUCCGgUUGU..................................................... len:19 al:4 ....................UAGGCGUAUUUCCGAUUGUCCUaU................................................ len:24 al:5 ....................UAGGCGUAUgUCCGAUUGUCC................................................... len:21 al:4 ....................UAGGCGUAUUUCuGAUUGU..................................................... len:19 al:6 ....................aAGGCGUAUUUCCGAUUGU..................................................... len:19 al:1 ....................UuGGCGUAUUUCCGAUUGU..................................................... len:19 al:2 ....................UAGGCGUAUUUCCGAUUGUgC................................................... len:21 al:4 ....................UAGGCGUAUUUCCGAUUGcCCUU................................................. len:23 al:3 ....................UAGGCGUAUUgCCGAUUGUCC................................................... len:21 al:1 ....................UAGGCGUAUUUCCGAUUGUaC................................................... len:21 al:28 ....................UAGGCGUAUUUCCGAUUGUCCU.................................................. len:22 al:1348 ....................UAGGCGUAUUaCCGAUUGU..................................................... len:19 al:2 ....................UAGGCGUAUUUCCGAUUGUCCUUUUACUACu......................................... len:31 al:4 ....................UAGGCGUAUUUCCGAUUGUCCUUUUACUACG......................................... len:31 al:1 ....................UAGGCGUAaUUCCGAUUGUC.................................................... len:20 al:1 ....................UAGGCGUAUUUCCGAUUGgCC................................................... len:21 al:123 ....................UAGGCaUAUUUCCGAUUGUC.................................................... len:20 al:19 ....................UAGGuGUAUUUCCGAUUGU..................................................... len:19 al:4 ....................UAGGCGUAUUcCCGAUUGUCCUU................................................. len:23 al:1 ....................UAGGCGUAUUUuCGAUUGUC.................................................... len:20 al:6 ....................UAGGCGUAcUUCCGAUUGU..................................................... len:19 al:5 ....................UAGGCGUAUUUCCGAUUGUCCcU................................................. len:23 al:6 ....................UAGGCGUAUUUCCGAUUGUCaUUU................................................ len:24 al:2 ....................UAGGCGUAUUUCCGAUc....................................................... len:17 al:2 ....................cAGGCGUAUUUCCGAUUGUC.................................................... len:20 al:37 ....................UAGGCGUuUUUCCGAUUGUCC................................................... len:21 al:1 ....................UAGGCGUAUUUCCGAUUGUuC................................................... len:21 al:129 ....................UAGGCaUAUUUCCGAUUGUCC................................................... len:21 al:47 ....................UAGGCGUAUUUCCGAUUGUCgUU................................................. len:23 al:1 ....................UAGGCGUAUUUCCGAUUGaC.................................................... len:20 al:8 ....................UAGGCuUAUUUCCGAUUGUCC................................................... len:21 al:5 ....................UAGGCGUAcUUCCGAUUG...................................................... len:18 al:1 ....................UAGGCGUAUUUCCGAUUGUCCg.................................................. len:22 al:92 ....................UAGGCGUAUUUCCGAUUGUCCUUUUAC............................................. len:27 al:3 ....................UAGGCGUAUUUCCGAUUaU..................................................... len:19 al:8 ....................gAGGCGUAUUUCCGAUUGUCCU.................................................. len:22 al:2 ....................UAGGCGUAUUUCCGAUUaUCCUU................................................. len:23 al:1 ....................UAGGCGUAUUUCCGAUUGUCCaUUUA.............................................. len:26 al:6 ....................UAGGCGUAUUUCCGAUUGUCCc.................................................. len:22 al:208 ....................UAGGCGaAUUUCCGAUUGUCC................................................... len:21 al:3 ....................UAGGCGUAUUUCCGAUUuUCC................................................... len:21 al:4 ....................cAGGCGUAUUUCCGAUUGUCCUU................................................. len:23 al:2 ....................UAGGCGUAUUUaCGAUUGUCC................................................... len:21 al:5 ....................UAGGCGUAUUUuCGAUUGUCCU.................................................. len:22 al:1 ....................UAGGaGUAUUUCCGAUUGUCC................................................... len:21 al:9 ....................UAGGCGUAUUUCCGAUaGUCC................................................... len:21 al:6 ....................UcGGCGUAUUUCCGAUUGUCCUUUUACUAC.......................................... len:30 al:1 ....................UAGGCGUAUUaCCGAUUGUCC................................................... len:21 al:18 ....................UAGGCGUAUUUCCaAUUGUCCUUU................................................ len:24 al:1 ....................UAGGCGUAUUUCCGgUUGUC.................................................... len:20 al:43 ....................UAGGCGUAUUUCCGAcUGUC.................................................... len:20 al:42 ....................UAGGCGUAUUUCuGAUUGUC.................................................... len:20 al:24 ....................UAGGCGUcUUUCCGAUUGUCC................................................... len:21 al:46 ....................UAGGCcUAUUUCCGAUUGUC.................................................... len:20 al:4 ....................UAGGCGUAcUUCCGAUUGUCCUUU................................................ len:24 al:1 ....................UAGGCGUAUUcCCGAUUGUC.................................................... len:20 al:46 ....................UAGGCGUAUUUCCGAUUGUCCUUaU............................................... len:25 al:2 ....................UAGGCGUgUUUCCGAUUGUCCUU................................................. len:23 al:2 ....................UAGGCGUAUUUCCaAUUGUC.................................................... len:20 al:16 ....................cAGGCGUAUUUCCGAUUGUCC................................................... len:21 al:91 ....................UAGGCaUAUUUCCGAUUGUCCU.................................................. len:22 al:1 ....................UAGGCGUAUUUCCcAUUGUCC................................................... len:21 al:5 ....................UAGGCGUgUUUCCGAUUGUC.................................................... len:20 al:35 ....................UAGGCGUAUUUCCGAUUGUCCUU................................................. len:23 al:520 ....................UAGGCGUAUUUCCGAUUGUCCgU................................................. len:23 al:3 ....................UAGGCGUAUUUCCGAUUGUCCcUU................................................ len:24 al:1 ....................UAGGCGUAcUUCCGAUUGUCC................................................... len:21 al:117 ....................UAGGCGUAUUUCuGAUUGUCC................................................... len:21 al:54 ....................UAGGCGUAUUUCCGAaUGUCC................................................... len:21 al:6 ....................UAaGCGUAUUUCCGAUUGUC.................................................... len:20 al:21 ....................UAGGCGUAUUUCCGAUUuU..................................................... len:19 al:2 ....................UAGGCGUAUUUCaGAUUGUC.................................................... len:20 al:1 ....................UAGGCGcAUUUCCGAUUGUCCUU................................................. len:23 al:2 ....................UAGGCGUAUUUCCGAUUGgC.................................................... len:20 al:28 ....................UAGGCGUAUUUCCGAUUGa..................................................... len:19 al:137 ....................UAGGCGUAUUUCCGAUU....................................................... len:17 al:9 ....................UAGaCGUAUUUCCGAUUGUCC................................................... len:21 al:32 ....................UcGGCGUAUUUCCGAUUGUC.................................................... len:20 al:11 ....................cAGGCGUAUUUCCGAUUGU..................................................... len:19 al:5 ....................UAGGCGUAUUUCCGAUcGUCCUU................................................. len:23 al:2 ....................UAGGCGUAUUUCCGAaUGUCCUU................................................. len:23 al:1 ....................UAGGCGUAUUUCCGAUUGUC.................................................... len:20 al:17064 ....................UAGGCGUAUUcCCGAUUGU..................................................... len:19 al:7 ....................UAGGCGUAUUUCaGAUUGUCC................................................... len:21 al:10 ....................UcGGCGUAUUUCCGAUUGUCC................................................... len:21 al:27 ....................aAGGCGUAUUUCCGAUUGUCC................................................... len:21 al:14 ....................UAGGCGUAUUUCCGcUU....................................................... len:17 al:1 ....................UAGGCGgAUUUCCGAUUGUC.................................................... len:20 al:1 ....................UAGGCGUAUUUCCuAUUGUC.................................................... len:20 al:1 ....................UAGGuGUAUUUCCGAUUGUC.................................................... len:20 al:23 ....................UAGuCGUAUUUCCGAUUGU..................................................... len:19 al:1 .....................AGGCGUAUUUCCGAUUGUCCUUU................................................ len:23 al:1 .....................AGGCGUAUUUCuGAUUGUCC................................................... len:20 al:1 .....................AGGCGUAUUUCCGAUUGUCC................................................... len:20 al:5 .....................uGGCGUAUUUCCGAUUGUCC................................................... len:20 al:2 .....................AGGCGUAUUUCCGAUUGUCCaUU................................................ len:23 al:1 .....................cGGCGUAUUUCCGAUUGU..................................................... len:18 al:2 .....................AGGCGUAUUUCCGAUUGUCu................................................... len:20 al:3 .....................AGGCGUAUUUCCGAUUGUC.................................................... len:19 al:5 .....................AGGCGUAUUUCCGAUUGUCa................................................... len:20 al:6 .....................AGGCGUAUUUCCGAUUGU..................................................... len:18 al:4 ......................GGCGUAUUUCCGAUUGUCCc.................................................. len:20 al:1 ......................GGCGUAUUUCCGAUUGUCCcU................................................. len:21 al:1 ......................GGCGUAUUUCCGAUUGUCCa.................................................. len:20 al:4 ......................GGCGUAUUUCCGAUUGUCCUU................................................. len:21 al:2 ......................GGuGUAUUUCCGAUUGUCCU.................................................. len:20 al:1 ......................GGCGUAUUUCCGAUUGUCa................................................... len:19 al:6 ......................GGCGUAUUUCCGAUUGcCCU.................................................. len:20 al:1 ......................GGCGUAUUUCCGAUUGUCCUUU................................................ len:22 al:1 ......................GGCGUAUUUCCGAUUGUCCg.................................................. len:20 al:1 ......................GGCGcAUUUCCGAUUGUCCU.................................................. len:20 al:1 ......................GGCGUAUUUCCGAUUGUCCU.................................................. len:20 al:13 ......................GGCGUAUUUCCGAUUGgCC................................................... len:19 al:1 ......................GGCGUAUUUCCGAUUGUC.................................................... len:18 al:11 ......................GGCGUAUUUCCGAUUGUCCUUUU............................................... len:23 al:1 ......................GGCGUAUUUCCGAUUGUCu................................................... len:19 al:1 ......................GGCGUAUUUCCGAUUGUCCUa................................................. len:21 al:1 ......................GGCGUAUUUCCGAUUGUCC................................................... len:19 al:1 .......................GCGUAUUUCCGAUUGUCCU.................................................. len:19 al:7 .......................GCGUAUUUCCGAUUGUC.................................................... len:17 al:1 .......................GCGUAUUUCCGAUUGUCCUa................................................. len:20 al:1 .......................GCGUAUUUCCGAUUGUCC................................................... len:18 al:12 .......................GCGUAUUUCCGAUUGUCu................................................... len:18 al:2 .......................GCGUAUUUCCGAUUGUCCg.................................................. len:19 al:1 .......................GCGUAUUUCCGAUUGUCa................................................... len:18 al:2 .......................GCGcAUUUCCGAUUGUCCUUUU............................................... len:22 al:1 .......................GCGUAUUUCCGAUUGUCCc.................................................. len:19 al:1 ........................CGUAUUUCCGAUUGUCCUa................................................. len:19 al:1 ........................CGUAUUUCCGAUUGUCCU.................................................. len:18 al:2 ........................CGUAUUUCCGAUUGUC.................................................... len:16 al:1 .........................GUAUUUCCGAUUGUCC................................................... len:16 al:1 .........................GUAUUUCCGAUUGUCCUUc................................................ len:19 al:1 .........................GUAUUUCCGAUUGUCCUUU................................................ len:19 al:6 .........................GUAUUUCCGAUUGUCCUUa................................................ len:19 al:1 .........................GUAUUUCCGAUUGUC.................................................... len:15 al:2 .........................GUAUUUCCGAUUGUCCU.................................................. len:17 al:1 .........................GUAUUUCCGAUUGUCCUU................................................. len:18 al:6 .........................GUAUUUCCGAUUGUCCUaU................................................ len:19 al:2 .........................GUAUUUCCGAUUGUCCUa................................................. len:18 al:2 ..........................aAUUUCCGAUUGUCCUUU................................................ len:18 al:1 ..........................UAUUUCCGAUUGUCCUaU................................................ len:18 al:2 ..........................UAUUUCCGAUUGUCCUUU................................................ len:18 al:1 ..........................UAUUUCCGAUUGUCCU.................................................. len:16 al:1 ...........................AUUUCCGAUUGUCCUaUU............................................... len:18 al:1 ...........................AUUUCCGAUUGUCCUUUU............................................... len:18 al:4 ..............................UCCGAUUGUCCUUUUACUcCG......................................... len:21 al:1 .......................................CCUUUUACUACGACAACCGGAACUACGUC........................ len:29 al:6 .......................................CCUUUUACUACGACAgCCGGAACUACGU......................... len:28 al:2 .......................................CCUUUUACUACGACAACCGGAACUACGU......................... len:28 al:1 ........................................CUUUUACUACGACAACCGGAACUACGUa........................ len:28 al:1 ........................................CUUUUACUACGACAgCCGGAACUACGUC........................ len:28 al:2 ........................................CUUUUACUACGACAgCCGGAACUACGUCUG...................... len:30 al:1 ........................................CUUUUACUACGACAACCGGAACUACGU......................... len:27 al:1 ........................................CUUUUACUACGACAgCCGGAACUACGU......................... len:27 al:1 .........................................cUUUACUACGACAACCGGAACUACGUCUGUC.................... len:31 al:1 .........................................UUUUACUACGACAACCGGAACUACGUC........................ len:27 al:17 .........................................UUUUACUACGACAgCCGGAACUACGUCUGUC.................... len:31 al:1 .........................................UUUUACUACGACAACCGGAACUACGUCUGcC.................... len:31 al:2 .........................................UUUUACUACGACAACCGGAACUACGUCUGUC.................... len:31 al:121 .........................................UUUUACUACGACAgCCGGAACUACGUCUGU..................... len:30 al:2 .........................................UUUUACUACGACAACCGGAgCUACGUCUGUC.................... len:31 al:1 .........................................UUUUACUACGACAACCGGAgCUACGUC........................ len:27 al:1 .........................................UUUUACUACGACAACuGGAACUACGUCUGUC.................... len:31 al:2 .........................................UUUUACUACGACAACCGGAACUACGUCU....................... len:28 al:3 .........................................UUUUACUACGACAACCGGAACUACGUCUGUa.................... len:31 al:6 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...............................................UACGACAACCGGgACUACGUCU....................... len:22 al:1 ...............................................UcCGACAACCGGAACUACGUCUGUC.................... len:25 al:1 ...............................................UACGACAACCGGAACUACGUCUGa..................... len:24 al:3 ...............................................UACGACAACuGGAACUACGUCU....................... len:22 al:1 ...............................................UACGACAACCGGAACUACGUCUGUu.................... len:25 al:8 ...............................................UACGACAACCGGAACUACGUCg....................... len:22 al:4 ...............................................UACGACAACCGGAACUACGUCUc...................... len:23 al:1 ...............................................UACGACAACCGGAACUACG.......................... len:19 al:4 ...............................................UACGACAACCGGAACUACGUCa....................... len:22 al:9 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................................................ACGACAACCGGAACUACGUC........................ len:20 al:6 ................................................ACGgCAACCGGAACUACGUCUGU..................... len:23 al:1 ................................................ACGACAACCGGAACUACGUCUGUCA................... len:25 al:2 ................................................gCGACAACCGGAACUACGUCU....................... len:21 al:1 ................................................ACGACAACCGGAACUACGUCc....................... len:21 al:1 ................................................ACGACAACCGGAACUACGUCUGUa.................... len:24 al:1 ................................................ACGACAACCGGAACUACGUCUG...................... len:22 al:1 ................................................ACGACAgCCGGAACUACG.......................... len:18 al:1 .................................................CGACAACCGGAACUACGUCUGUu.................... len:23 al:3 .................................................CGACAACCGGAACUACGUCUGUCA................... len:24 al:2 .................................................CGACAACCGGAACUACGUCUGc..................... len:22 al:1 .................................................CGACAACCGGAACUACGUCU....................... len:20 al:6 .................................................CGACAgCCGGAACUACGUC........................ len:19 al:2 .................................................CGACAACCGGAACUACGUCg....................... len:20 al:1 .................................................CGACAACCGGAACUACGUCUGU..................... len:22 al:15 .................................................CGACAACCGGAACUACGUCUGUC.................... len:23 al:10 .................................................CGACAACCGGAACUACGU......................... len:18 al:5 .................................................CGACAACCGGAACUACGUCUGUCu................... len:24 al:2 .................................................CGACAACCGGAACUACG.......................... len:17 al:1 ..................................................GACAgCCGGAACUACGUCU....................... len:19 al:438 ..................................................GACAACCGGAACUACGUCUGUa.................... len:22 al:10 ..................................................GACAACCaGAACUACGUCU....................... len:19 al:1 ..................................................GgCAACCGGAACUACGUCU....................... len:19 al:3 ..................................................GACAACCGGAcCUACGUCU....................... len:19 al:1 ..................................................GACAACCGGAACUACGUu........................ len:18 al:2 ..................................................GACAgCCGGAACUACGUCUG...................... len:20 al:5 ..................................................GACAACCGGAACUACGU......................... len:17 al:1 ..................................................GACAACCGGAACUAuGUCU....................... len:19 al:1 ..................................................aACAACCGGAACUACGUCUGU..................... len:21 al:1 ..................................................GACAACuGGAACUACGUCUGU..................... len:21 al:1 ..................................................uACAACCGGAACUACGUCUGUCA................... len:23 al:1 ..................................................GACAACCGGAACUACGUCUGUCg................... len:23 al:1 ..................................................GACAACCGGAACUACGUCUGU..................... len:21 al:701 ..................................................GACAACCGGAACUACGUCUGg..................... len:21 al:9 ..................................................GACAACCGGAACUACGUCU....................... len:19 al:470 ..................................................GACAACCGGAACUACGUCUGc..................... len:21 al:70 ..................................................cACAACCGGAACUACGUCUGUC.................... len:22 al:1 ..................................................GACAACCGGAACUACGUCUGUCu................... len:23 al:97 ..................................................GACAACCGGAACUACGUCUGUCAu.................. len:24 al:1 ..................................................uACAACCGGAACUACGUCU....................... len:19 al:2 ..................................................GACAACCGGAACUACGUCUG...................... len:20 al:30 ..................................................GACAACCGGgACUACGUCU....................... len:19 al:1 ..................................................GACAACCGGAACUACGcCU....................... len:19 al:4 ..................................................GACAACCGGAACUACGUCUGUCc................... len:23 al:6 ..................................................GgCAACCGGAACUACGUCUGU..................... len:21 al:9 ..................................................GcCAACCGGAACUACGUCU....................... len:19 al:1 ..................................................GACAACCGGAACUACGUCUa...................... len:20 al:3 ..................................................GACAACCGGAACUACGcCUGU..................... len:21 al:1 ..................................................GACAACCGGAACUACGcCUG...................... len:20 al:1 ..................................................GACAACCGGAACUACGUCUaU..................... len:21 al:1 ..................................................GACAACCGGAACUACGaCUGUC.................... len:22 al:1 ..................................................GACAACCGGAACUACGUCUGUCA................... len:23 al:53 ..................................................GACAACCGGAACUACGUCUGUu.................... len:22 al:61 ..................................................GACAACCGGAACUACGUa........................ len:18 al:3 ..................................................GcCAACCGGAACUACGUC........................ len:18 al:1 ..................................................GACAgCCGGAACUACGUCUGU..................... len:21 al:8 ..................................................GACAACCGGAACUACGUCUGUC.................... len:22 al:140 ..................................................GACAACCGGAcCUACGUCUGU..................... len:21 al:1 ..................................................GACAACCGGAACUACuUCUGUC.................... len:22 al:2 ..................................................aACAACCGGAACUACGUCU....................... len:19 al:2 ..................................................GACAcCCGGAACUACGUCUGU..................... len:21 al:1 ..................................................GACAACCGGAACUACGcC........................ len:18 al:1 ..................................................GACAACCGGAACUgCGUCU....................... len:19 al:2 ..................................................GACAACCGGAACUAuGUCUGUC.................... len:22 al:1 ..................................................GACAACCGGAACUgCGUCUGU..................... len:21 al:4 ..................................................GACAACCGGAACUACGUCa....................... len:19 al:31 ..................................................GACAACCGGAACcACGUCUGU..................... len:21 al:1 ..................................................GACAACCGGAACUACGUCUGcCA................... len:23 al:1 ..................................................GACAACCGGAgCUACGUCUGU..................... len:21 al:3 ..................................................GACAACCGGAACUACGUCcG...................... len:20 al:3 ..................................................GACAACCGGAgCUACGUCU....................... len:19 al:1 ..................................................GACAACCGGAACUACGUCg....................... len:19 al:5 ..................................................GACAACCGGgACUACGUCUGU..................... len:21 al:1 ..................................................GACAcCCGGAACUACGUCU....................... len:19 al:1 ..................................................GACAACaGGAACUACGUCUGU..................... len:21 al:1 ..................................................GuCAACCGGAACUACGUCU....................... len:19 al:1 ..................................................GACAACCGGAACUACGUC........................ len:18 al:21 ..................................................uACAACCGGAACUACGUCUGUC.................... len:22 al:1 ..................................................GACgACCGGAACUACGUCUGU..................... len:21 al:1 ..................................................GACAACCGGAACUACGUCUGa..................... len:21 al:8 ..................................................uACAACCGGAACUACGUCUGU..................... len:21 al:4 ..................................................GACAgCCGGAACUACGUC........................ len:18 al:17 ..................................................GACAACCGGAACUACGUuU....................... len:19 al:2 ..................................................GACAACCGGAACUACGUCUGUuA................... len:23 al:7 ..................................................GACAACCGGAACcACGUCUGUC.................... len:22 al:1 ..................................................GACAACCGGAACUACGUCUuU..................... len:21 al:3 ..................................................GACAACCGGAACUACGUCc....................... len:19 al:49 ..................................................GACgACCGGAACUACGUCUGUC.................... len:22 al:1 ..................................................GACAACCGGAACcACGUCU....................... len:19 al:1 ..................................................GACAAuCGGAACUACGUCUGU..................... len:21 al:3 ...................................................ACAACCGGAACUACGUCUGc..................... len:20 al:1 ...................................................ACAACCGGAACUACGUCUGUC.................... len:21 al:14 ...................................................ACAACCGGAACUACGUCUGcC.................... len:21 al:2 ...................................................ACAgCCGGAACUACGUCU....................... len:18 al:2 ...................................................ACAACCGGAACUACGUCUGUCu................... len:22 al:1 ...................................................ACAACCGGAACUACGUCUGUCA................... len:22 al:1 ...................................................ACAACCGGAACUACGUCU....................... len:18 al:2 ...................................................ACAACCGGAACUACGUCUGU..................... len:20 al:5 ...................................................ACAACCGGAACUACGUCUGUu.................... len:21 al:1 ....................................................CAACCGGAACUACGUCUGUCAu.................. len:22 al:3 ....................................................CAgCCGGAACUACGUCUGUC.................... len:20 al:4 ....................................................CAACCGGAACUACGUCUGUu.................... len:20 al:2 ....................................................CAACCGGAACUACGUCUGUC.................... len:20 al:19 ....................................................CAACCGGAACUgCGUCUGUC.................... len:20 al:1 ....................................................CAACCGGAACUACGUCUGUuA................... len:21 al:3 ....................................................CAgCCGGAACUACGUCUGUCA................... len:21 al:19 ....................................................CAgCCGGAACUACGU......................... len:15 al:1 ....................................................CAACCGGAACUACGUCUGUCg................... len:21 al:2 ....................................................CAACCGGAACUACGUCUGUCA................... len:21 al:42 ....................................................CAACCGGAACUACGUCUGUCu................... len:21 al:21 ....................................................CAACCGGAACUACGUCUGU..................... len:19 al:14 ....................................................CAACCGGAACUACGUCUGc..................... len:19 al:1 ....................................................CAgCCGGAACUACGUC........................ len:16 al:1 ....................................................CAACCGGAACUACGUCUGUCc................... len:21 al:2 ....................................................CAACCGGAACUACGUCUGUCAa.................. len:22 al:1 .....................................................AgCCGGAACUACGUCUGU..................... len:18 al:4 .....................................................AACCGGAACUACGUCUGUCu................... len:20 al:3 .....................................................AACCGGAACUACGUCUGUCA................... len:20 al:4 .....................................................AACCGGAACUACGUCUGU..................... len:18 al:1 .....................................................AgCCGGAACUACGUCUGUC.................... len:19 al:4 .....................................................AgCCGGAACUACGUCUGUCA................... len:20 al:34 .....................................................AACCGGAACUACGUCUGUC.................... len:19 al:2 ......................................................ACCGGAACUACGUCUGUCu................... len:19 al:1 ......................................................ACCGGAACUACGUCUGUC.................... len:18 al:1 ......................................................gCCGGAACUACGUCUGUCA................... len:19 al:4 ......................................................ACCGGAACUACGUCUGUCA................... len:19 al:1 ......................................................gCCGGAACUACGUCUGUC.................... len:18 al:3 .......................................................CCGGAACUACGUCUGUCA................... len:18 al:1 .......................................................CCGGAACUACGUCUGcCA................... len:18 al:1 ........................................................CGGAACUACGUCUGU..................... len:15 al:1 .........................................................GGAACUACGUCUGUCA................... len:16 al:1 ........................................................................ACGUAGGCUUAUACUGcU.. len:18 al:1 ........................................................................ACGUAGGCUUAUACUGUU.. len:18 al:2