Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000016l:7795508-7795602 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_9008.ps.pdf
Locus Name: Cluster_9008
UAGAAAAUGUGGGAUGAGUGCCUGGGUGUCAUCUAUUAUGUUUUUGCUUGUUAAAACAUAAAAGAUGGCACCAGACAUUCAUCUCAAAAACUUGG
.........(((((((((((.((((.((((((((.(((((((((........))))))))).)))))))))))).)))))))))))......... (-41.10)
UAGAAAAUGUGGGAUGAGUGCC......................................................................... len:22 al:9
.AGAAAAUGUGGGAUGAGUGCa......................................................................... len:21 al:1
.AGAAAAUGUGGGAUGAGUGCC......................................................................... len:21 al:3
.AGAAAAUGUGGGAUGAGUGCu......................................................................... len:21 al:2
..GAAAAUGUGGGAUGAGUGCC......................................................................... len:20 al:8
..GAgAAUGUGGGAUGAGUGCC......................................................................... len:20 al:1
..GAAAAUGUGGGAUGAGUGCu......................................................................... len:20 al:2
..GAAAAUGUGGGAUGAGUGCa......................................................................... len:20 al:1
..GAAAAUGUGGGAUGAaUGCC......................................................................... len:20 al:1
...gAAAUGUGGGAUGAGUGCC......................................................................... len:19 al:1
...AAAAUGUGGGAUGAGUGCu......................................................................... len:19 al:16
...AAAAUGUGGGAUGAGUGCa......................................................................... len:19 al:4
...AAAAUGUGGGAUGAGUGCC......................................................................... len:19 al:39
...AAAAUGUGGGAUGAGUGa.......................................................................... len:18 al:2
....AAAUGUGGGAUGAGUGCC......................................................................... len:18 al:33
....AAAUGUGGGAUGAGUGCu......................................................................... len:18 al:13
....AAAUGUGGGAUGAGUGCa......................................................................... len:18 al:4
.....AAUGUGGGAUGAGUGCu......................................................................... len:17 al:1
.....AAUGUGGGAUGAGUGCa......................................................................... len:17 al:1
.....................CUGGGUGUCAUCUAUUAUGUUUU................................................... len:23 al:6
......................UGGGUGUCAUCUAUUAUGUUUc................................................... len:22 al:404
......................UGGGUGcCAUCUAUUAUGU...................................................... len:19 al:1
......................UGGGcGUCAUCUAUUAUGUUUUU.................................................. len:23 al:2
......................UGGGUGUCAUCUAUUAUGg...................................................... len:19 al:3
......................UGGGUGUCAUCUAaUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGUUUUUa................................................. len:24 al:3
......................UGGGUGUCAUCUAUU.......................................................... len:15 al:13
......................UGGGUGUCAUCUAUUAUGUg..................................................... len:20 al:1
......................UGGGUGUCAUCUAUUAcG....................................................... len:18 al:2
......................UGGGUGUCAUCUAUUcUGUUUU................................................... len:22 al:4
......................UGaGUGUCAUCUAUUAUGUUUU................................................... len:22 al:11
......................UGGGUGcCAUCUAUUAUGUUUU................................................... len:22 al:29
......................UGGGUGUCgUCUAUUAUGUUUU................................................... len:22 al:48
......................UGGGUGUCAUCUAUUAUcUUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:631
......................UGGGUGUCAUCUAUUAUGUcUU................................................... len:22 al:12
......................UGGGUGUCAUCUAUUAUGgUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCcAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAcCUAUUAUGU...................................................... len:19 al:1
......................UGGGUGUCAUCUAUUAUGUgUU................................................... len:22 al:4
......................UGGaUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:2
......................UGGGUGUCAUCUAUUAUGUUUUUc................................................. len:24 al:1
......................UGGGUGaCAUCUAUUAUGUUUU................................................... len:22 al:4
......................UGGGUGUCcUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUaUCAUCUAUUAUGUUUU................................................... len:22 al:6
......................UaGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:6
......................UGGGUGUCAUCUAUUAUGUUUUUGCUUGUU........................................... len:30 al:2
......................UGGGUGaCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUAUGUUcU................................................... len:22 al:24
......................UGGGcGUCAUCUAUUAUGU...................................................... len:19 al:1
......................UGGGUGUCAUCUAUUAUGUU..................................................... len:20 al:180
......................gGGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUaUAUUAUGUUUU................................................... len:22 al:3
......................gGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGUUUa................................................... len:22 al:125
......................UGGGUGUCAUCUAcUAUGUUUU................................................... len:22 al:21
......................UGGGUGUCAUCUAUcAUGUUUU................................................... len:22 al:17
......................UuGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAaCUAUUAUGUUUU................................................... len:22 al:2
......................UGGGUaUCAUCUAUUAUGUUU.................................................... len:21 al:1
......................cGGGUGUCAUCUAUUAUGUUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUGUUUUUu................................................. len:24 al:25
......................UGGGUGUCgUCUAUUAUGUU..................................................... len:20 al:2
......................UGGGUGUCgUCUAUUAUGUUU.................................................... len:21 al:2
......................UGGGUGUCAUCUAUUAUa....................................................... len:18 al:3
......................UGGGUGUCAUCUAUUAUGUa..................................................... len:20 al:2
......................UGGGUGUCAUCUAUUAUG....................................................... len:18 al:44
......................UGGGgGUCAUCUAUUAUGUUUU................................................... len:22 al:3
......................UaGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:2
......................UGGGUGUCAUCUAUUAUGUUUUa.................................................. len:23 al:247
......................UGGGUGUCAUCUAUUAUGUUUUUGCUUGU............................................ len:29 al:3
......................UGGGUGUCcUCUAUUAUGUUUU................................................... len:22 al:10
......................UGGGUGUCAUCUAUUAUGUUUUc.................................................. len:23 al:24
......................UGGGUGUCAUCUAUUAUGcUUU................................................... len:22 al:11
......................UGGGUGUCAUCUAUaAUGUUUU................................................... len:22 al:5
......................UGGGUGUCAUCUAUUAUGUUU.................................................... len:21 al:492
......................UGaGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGuUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:3
......................UGGGUGUCAUCUAUUAUGUUUaU.................................................. len:23 al:14
......................UGGGUGUCAUCUAUUA......................................................... len:16 al:1
......................UGGGUGUCAcCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUAcGUUUU................................................... len:22 al:29
......................UGGGUGUCAUCUAUUAUaUUUU................................................... len:22 al:1
......................UGGGUGUCAUCaAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGUUc.................................................... len:21 al:32
......................UGGGUGUCAUCUAUUAUGcUUUU.................................................. len:23 al:2
......................UGGGUGUCAUCcAUUAUGUUUU................................................... len:22 al:13
......................UGGaUGUCAUCUAUUAUGUUUU................................................... len:22 al:14
......................UGGGUGUCAUCUAUUgUGUUUU................................................... len:22 al:27
......................UGGGUGUCAUCUgUUAUGUUUU................................................... len:22 al:19
......................UGGGUGUCAUCUAUUAUGcUU.................................................... len:21 al:2
......................UGGGUGUCAcCUAUUAUGUUUU................................................... len:22 al:18
......................UGGGUGUCAUCUAUUAUGUc..................................................... len:20 al:18
......................UGGGUGUCAUCUAUUAUGUUg.................................................... len:21 al:2
......................UGGGUGUCAUCUAUUAUGUaUU................................................... len:22 al:1
......................UGGGUGcCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUAUGUUUg................................................... len:22 al:22
......................UGGGUGUCAUCUAUUAUGUUgU................................................... len:22 al:6
......................UGGGUGUCAUCUuUUAUGUUUU................................................... len:22 al:1
......................UGGGUGUCAUCUAUUAUGUUa.................................................... len:21 al:9
......................UGGGUGUCAUCUcUUAUGUUUU................................................... len:22 al:9
......................UGGGUGUCAUCUAUUAUGUcU.................................................... len:21 al:2
......................UGGGUGUCAUCUAgUAUGUUUU................................................... len:22 al:1
......................UGGGUGUuAUCUAUUAUGUUUU................................................... len:22 al:17
......................UGGGUGUCAUCUAUUAUGcU..................................................... len:20 al:1
......................UGGGUGUCAUCUAUUAUGUUUcU.................................................. len:23 al:1
......................UGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:8962
......................UGGGUGUCuUCUAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAcCUAUUAUGUU..................................................... len:20 al:3
......................UGGGUGUCAgCUAUUAUGUUUU................................................... len:22 al:1
......................UuGGUGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCcUCUAUUAUGU...................................................... len:19 al:1
......................aGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:10
......................UGGGcGUCAUCUAUUAUGUUUU................................................... len:22 al:25
......................UGGGUGUCAUCUAcUAUGUUUUU.................................................. len:23 al:2
......................UGGGUGUCAUCUAcUAUGUUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUGU...................................................... len:19 al:172
......................UGGuUGUCAUCUAUUAUGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUaAUGUUU.................................................... len:21 al:1
......................UGGGUGUCAUuUAUUAUGUUUU................................................... len:22 al:4
......................cGGGUGUCAUCUAUUAUGUUUU................................................... len:22 al:22
......................UGGGcGUCAUCUAUUAUGUUU.................................................... len:21 al:2
......................UGGGUGUCAUCUAUUAUGgUUU................................................... len:22 al:2
......................UGGGUuUCAUCUAUUAUGUUUU................................................... len:22 al:2
......................UGGGaGUCAUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGUGUCAUCUcUUAUGU...................................................... len:19 al:1
......................UGGGUGUCgUCUAUUAUGUUUUU.................................................. len:23 al:1
......................UGGGaGUCAUCUAUUAUGUUUU................................................... len:22 al:8
......................UGGGUGUCAUCUAUUAUGc...................................................... len:19 al:19
......................UGGGUGUCAUCUAUUAUGUgU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAUuUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGUUaU................................................... len:22 al:9
......................UGGGUGUCAUCUAUUAU........................................................ len:17 al:1
......................UGGGUGUCAUCUAUUgUGUUU.................................................... len:21 al:2
......................UGGGUGcCAUCUAUUAUGUUU.................................................... len:21 al:1
......................UGGGUGUCAUCUAUUAaGUUUU................................................... len:22 al:2
......................UGGGUGUCAUCUAUUAUGa...................................................... len:19 al:4
.......................uGGUGUCAUCUAUUAUGUUUU................................................... len:21 al:3
.......................GGGUGUCAUCUAUUAUGUUUU................................................... len:21 al:1
.........................GUGUCAUCUAUUAUGUUUU................................................... len:19 al:1
..........................................UUUGCUUGUUAAAACAUAAAAGAUGGCACCA...................... len:31 al:2
............................................UGCUUGUUAAAACAUAAAAGAUGGCACuAGA.................... len:31 al:2
............................................UGCUUGUUAAAACAUAAAAGAUGGCACCAGA.................... len:31 al:1
.............................................GCUUGUUAAAACAUAAAAGAUGGCACuAGA.................... len:30 al:1
.............................................GCUUGUUAAAACAUAAAAGAUGGCACCAG..................... len:29 al:1
...............................................UUGUUAAAACAUAAAAGAUGGCACuAGA.................... len:28 al:1
...................................................UAAAACAUAAAAGAUGGCACu....................... len:21 al:1
.....................................................AAACAUAAAAGAUGGCACCAGc.................... len:22 al:1
......................................................AACAUAAAAGAUGGCACCAGACc.................. len:23 al:1
......................................................AACAUAAAAGAUGGCACCAGACu.................. len:23 al:6
......................................................AACAUAAAAGAUGGCACa....................... len:18 al:7
......................................................AACAUAAAAGAUGGCACCAGAuAUU................ len:25 al:1
......................................................AACAUAAAAGAcGGCACC....................... len:18 al:1
......................................................AcCAUAAAAGAUGGCACC....................... len:18 al:1
......................................................AACAUAAAAGAUGGCACCAGg.................... len:21 al:2
......................................................AACAUAAAAGAUGGCACCAGACg.................. len:23 al:1
......................................................AACAUAAAAGAUGGCACCAGAC................... len:22 al:1
......................................................AACAUAAAAGAUGGCACCAGu.................... len:21 al:49
......................................................AACAUAAAAGAUGGCACCAGACA.................. len:23 al:1
......................................................AACAUAAAAGAUGGCACuAGA.................... len:21 al:235
......................................................AACAUAAAAGAUGGCACCAGA.................... len:21 al:51
......................................................AACAUAAAAGAUGGCACCAGc.................... len:21 al:5
......................................................AACAUAAAAGAUGGCACuAGACA.................. len:23 al:3
......................................................AACAUAAAAGAUGGCACu....................... len:18 al:183
......................................................AACAUAAAAGAUGGuACCA...................... len:19 al:1
......................................................AACAUAAAAGAUGGCgCC....................... len:18 al:1
......................................................AACAUAAAAGAUGGCACCAGAa................... len:22 al:1
......................................................gACAUAAAAGAUGGCACCAG..................... len:20 al:1
......................................................AACAUAAAAGAUGGCACCAGAu................... len:22 al:25
......................................................AACAUAAAAGAUGGCACC....................... len:18 al:58
......................................................AACAUAAAAGAUGGCACuAGAC................... len:22 al:12
......................................................AACAUAAAAGAUGGCACuAG..................... len:20 al:50
......................................................AACAUAAAAGAUGGCACCAG..................... len:20 al:12
......................................................AACAUAAAAGAUGGCACCAGAuA.................. len:23 al:7
......................................................AACAUAAAAGAUGGCACCA...................... len:19 al:2
......................................................AACAUAAAAGAUGGCACuA...................... len:19 al:5
......................................................AACAUAAAAGAUGGCACCuG..................... len:20 al:1
......................................................AACAUAAAAaAUGGCACCAGA.................... len:21 al:1
......................................................AACAUAAAAGAUGGCACg....................... len:18 al:1
.......................................................ACAUAAAAGAUGGCACuAGA.................... len:20 al:2
.......................................................ACAUAAAAGAUGGCACCAG..................... len:19 al:1
.........................................................AUAAAAGAUGGCACCAGAu................... len:19 al:1