Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam Location: ptg000009l:8857289-8857380 minus PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5685.ps.pdf Locus Name: Cluster_5685 GUCUACGUGCGAAGUCGUUAUUAUGGAUAUCAGUUUUCUUUCAUAUUGAAAGUAGAACUAAUUUCCAUUACAAGGAUUUCUCACUUAAGGCG ((((..(((.((((((.((...(((((.((.((((((((((((...)))))).)))))).)).)))))...)).)))))).)))...)))). (-30.80) ....................UUAUGGAUAUCAGUUUUCUUUCA................................................. len:23 al:3 ....................UUAUGGAUAUCAGUUUUCUUUC.................................................. len:22 al:22 ....................UUAUGGcUAUCAGUUUUCUUUC.................................................. len:22 al:1 ....................UUAUGGAUAUCAGUUUUCUUc................................................... len:21 al:1 ....................UUAUGGAUAUCAGUUUUCU..................................................... len:19 al:1 ....................UUAUGGAUAUCAGUUUUC...................................................... len:18 al:1 .........................................CAUAUUGAAAGUAGAACUgAUUUCC.......................... len:25 al:2 .........................................CAUAUUGAAAGUAGAACUAAUUUCCAUUACA.................... len:31 al:2 ................................................AAAGUAGAACUAAUUUCCAUU....................... len:21 al:2 .................................................AAGUAGAgCUAAUUUCCAUUACAAGGAUU.............. len:29 al:1 .................................................AAGUAGAACUAAUUUCCAUUACA.................... len:23 al:2 ..................................................AGUAGAACUAAUUUCCAUUACA.................... len:22 al:1