Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/merged_alignments.bam
Location: ptg000009l:616285-616377 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/04-Apul-sRNA-discovery-ShortStack/ShortStack_out/strucVis/Cluster_5516.ps.pdf
Locus Name: Cluster_5516
UGAAAACUGACAAUAGUUACAUUUCACUAGAUGAGCGCUAACUGUUAUUGUUCUGCAUUAUCGGUGAAAUUGUAACUGUUGUCUCCUGUUGUU
........((((((((((((((((((((.((((((((..(((.......))).))).)))))))))))).))))))))))))).......... (-31.90)
...................CAUUUCACUAGAUGAGCGCU...................................................... len:20 al:1
...................CAUUUCACUAGAUGAGCGCUAAC................................................... len:23 al:1
....................AUUUCACUAGAUGAGCGCa...................................................... len:19 al:14
....................gUUUCACUAGAUGAGCGCUAACU.................................................. len:23 al:4
....................AUUUCACUgGAUGAGCGCUAACUGUUAUU............................................ len:29 al:1
....................AaUUCACUAGAUGAGCGCUAAC................................................... len:22 al:1
....................AUUUCACUgGAUGAGCGCUAACU.................................................. len:23 al:2
....................AUUUCACUAGAgGAGCGCUAAC................................................... len:22 al:2
....................AUUUCACUAGAUGAGCGCUAgC................................................... len:22 al:26
....................AUUUCACUAGAUGAGCGa....................................................... len:18 al:1
....................AUUUCACUAGAUGAGCGCUAACU.................................................. len:23 al:424
....................AUUUCACUAGAUGAGuGCUA..................................................... len:20 al:1
....................AUUUCACgAGAUGAGCGCUAAC................................................... len:22 al:2
....................AUUUCAuUAGAUGAGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGAGCGC....................................................... len:18 al:8
....................AUUUCACUAGAUGAGCGCUAACUuUU............................................... len:26 al:1
....................AUcUCACUAGAUGAGCGCUAAC................................................... len:22 al:19
....................AUUUCACUAGAUGAGCGuUAAC................................................... len:22 al:6
....................AUUUgACUAGAUGAGCGCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCaCUAAC................................................... len:22 al:11
....................AUUUCACUAGAUGAGCGCUAACUGa................................................ len:25 al:2
....................AUUUCAuUAGAUGAGCGCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCUAACUGUU............................................... len:26 al:9
....................AUUUCACUAGAUGgGCGCU...................................................... len:19 al:2
....................AUUUCACUgGAUGAGCGCUAAC................................................... len:22 al:20
....................AUUUCcCUAGAUGAGCGCUAAC................................................... len:22 al:12
....................AUUUCACUAGAUGAGuGCUAAC................................................... len:22 al:8
....................AUUUCACUAGAUGAGCGCUAc.................................................... len:21 al:1
....................AUUUCACUAGAUGAGCGCcAAC................................................... len:22 al:10
....................AUUcCACUAGAUGAGCGCUA..................................................... len:20 al:1
....................uUUUCACUAGAUGAGCGCUAAC................................................... len:22 al:2
....................AUUUCACUAGAUGAGCGCcA..................................................... len:20 al:4
....................AUUUCACUAGAUGcGCGCUAAC................................................... len:22 al:8
....................AUUUCACUAGgUGAGCGCUAACU.................................................. len:23 al:1
....................AcUUCACUAGAUGAGCGCUAAC................................................... len:22 al:30
....................AUUUCgCUAGAUGAGCGCUAAC................................................... len:22 al:17
....................AUUUCACcAGAUGAGCGCUAAC................................................... len:22 al:12
....................AUUUCACUAGAUGAGCGCUAcC................................................... len:22 al:5
....................AUUUCACUAGAUGAGCGCU...................................................... len:19 al:212
....................AUUUCACUAGAUGAGCGCUAA.................................................... len:21 al:90
....................AUUUCACUgGAUGAGCGCU...................................................... len:19 al:1
....................AUUUCACUAGcUGAGCGCUAACU.................................................. len:23 al:2
....................AUUUCACUAGAUGAGCcCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCg...................................................... len:19 al:3
....................AUUUCACUAGAUGAGCGCUAACa.................................................. len:23 al:492
....................AUUUCACUAGAUGAGgGCUAAC................................................... len:22 al:2
....................AUUUCACUAGAUGAGCGCUAACUGUUAUc............................................ len:29 al:1
....................AUUUCACUAGAUGAGCGCUAgCU.................................................. len:23 al:1
....................AUUcCACUAGAUGAGCGCUAAC................................................... len:22 al:35
....................AUUUCACUAGAUGAGCGCUgACU.................................................. len:23 al:4
....................AUUUCACUgGAUGAGCGCUAA.................................................... len:21 al:2
....................AUUUCACUAGAUGAGCGCUuACUGUUAUU............................................ len:29 al:1
....................AUUUCACUAGAUGAGCGCUAACUGUa............................................... len:26 al:1
....................AUgUCACUAGAUGAGCGCUAAC................................................... len:22 al:2
....................AUUUCACUAGAUGAGCGCUAACUa................................................. len:24 al:3
....................AUUUCACUAGAUGAGCGCUAACUGUc............................................... len:26 al:1
....................AUUUCACUAGgUGAGCGCUAAC................................................... len:22 al:29
....................AUUUCACUAGAUGAGCGCgAAC................................................... len:22 al:2
....................AUUUCACUAGAUGgGCGCUAAC................................................... len:22 al:32
....................cUUUCACUAGAUGAGCGCUAAC................................................... len:22 al:6
....................AUUUCACUAGcUGAGCGCUAAC................................................... len:22 al:3
....................AUUUCACUAGAUGAGCGu....................................................... len:18 al:3
....................AUUUCACUAGAUGAGCGCc...................................................... len:19 al:27
....................AUUaCACUAGAUGAGCGCUAAC................................................... len:22 al:3
....................AUUcCACUAGAUGAGCGCUAACU.................................................. len:23 al:2
....................AUUUCACUAGAUGAGCGCUAAC................................................... len:22 al:8860
....................AUaUCACUAGAUGAGCGCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCUg..................................................... len:20 al:1
....................AUUUCACUAGAUGAGCGCUuAC................................................... len:22 al:2
....................AUUUCACUAGAUGAGCGCUAACUaU................................................ len:25 al:1
....................AUUUCACUuGAUGAGCGCUAAC................................................... len:22 al:4
....................AUUUCACUAGAUGAaCGCUAAC................................................... len:22 al:6
....................AUUUCACUcGAUGAGCGCUAAC................................................... len:22 al:3
....................AUUUCACUAGAUGAGCuCUAAC................................................... len:22 al:2
....................AUUUCACaAGAUGAGCGCUAAC................................................... len:22 al:3
....................AUUUCACUAGAUGAGCGCUAACUu................................................. len:24 al:1
....................AUUUCACUAGAUGAGCGCUAACUGUUAUUu........................................... len:30 al:1
....................AUUUCgCUAGAUGAGCGCU...................................................... len:19 al:1
....................AUUUCACUAGAUGAGCGCUcAC................................................... len:22 al:3
....................AUUUCACUAGAUGAGCGCUAAa................................................... len:22 al:37
....................AUUUCACUAGAUGAGCaCU...................................................... len:19 al:1
....................AUaUCACUAGAUGAGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGAGCGCcAACU.................................................. len:23 al:1
....................AUUUCACUAaAUGAGCGCUAAC................................................... len:22 al:3
....................AUUUCACUAGAUGAGCGCUAACg.................................................. len:23 al:14
....................AUUUCACUAGAUGAGCGCUAACUGUg............................................... len:26 al:1
....................AUUUCACUAGAUGAGCGCUAACUuU................................................ len:25 al:2
....................AUUUCAaUAGAUGAGCGCUAAC................................................... len:22 al:12
....................AUUUCACgAGAUGAGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGAGCGCUAuC................................................... len:22 al:5
....................AUUUCACUAGAUGAGCGCUAu.................................................... len:21 al:1
....................AUUUCACcAGAUGAGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGAuCGCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCaCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGAGCGCUAACUGUUAUU............................................ len:29 al:5
....................AUUUCACUAGAUGAGCGCUAAu................................................... len:22 al:303
....................AUUUCACUAGAUGAGCGCUAACc.................................................. len:23 al:46
....................AUUUCACUAGAcGAGCGCUAAC................................................... len:22 al:26
....................AUUcCACUAGAUGAGCGCU...................................................... len:19 al:1
....................AUUUCAaUAGAUGAGCGCUAA.................................................... len:21 al:1
....................AUUUCACUAGAUGuGCGCUAAC................................................... len:22 al:4
....................AUUUCACUAGAUGcGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGAGCGCUgAC................................................... len:22 al:27
....................AUUUCACUAGAUGAGCGCUA..................................................... len:20 al:47
....................gUUUCACUAGAUGAGCGCUAAC................................................... len:22 al:28
....................AUUUCACUAGAUGAGCGCUAACUGU................................................ len:25 al:2
....................AUUUCACUAGAUGgGCGCUAACU.................................................. len:23 al:3
....................AUUUCACUAGAUGAGCGCUAAg................................................... len:22 al:2
....................AUUUCACUAGAUGAGCGCUAACUG................................................. len:24 al:5
....................AUUUuACUAGAUGAGCGCUAAC................................................... len:22 al:2
.....................aUUCACUAGAUGAGCGCUAAC................................................... len:21 al:1
.....................UUUCACUAGAUGAGCGCUAACc.................................................. len:22 al:2
.....................UUUCACUAGAUGAGCGCUAACa.................................................. len:22 al:5
.....................cUUCACUAGAUGAGCGCUAACU.................................................. len:22 al:1
.....................UUUCACUAGAUGAGCGCUAACU.................................................. len:22 al:12
.....................UUUCACUAGAUGAGCGCUAAC................................................... len:21 al:14
......................UUCACUAGAUGAGCGCUAACa.................................................. len:21 al:1
......................UUCACUAGAUGAGCGCUAACc.................................................. len:21 al:1
......................UUCACUAGAUGAGCGCUAA.................................................... len:19 al:1
......................UUCACUAGAUGAGCGCUAACU.................................................. len:21 al:5
......................UUCACUAGAUGAGCGCUAAC................................................... len:20 al:7
........................CACUAGAUGAGCGCUAAu................................................... len:18 al:1
........................CACUAGAUGAGCGCUAACUGa................................................ len:21 al:1
........................CACUAGAUGAGCGCUAAC................................................... len:18 al:1
..............................AUGAGCGCUAACUGUUAUUGUUCUGC..................................... len:26 al:2
................................GAGCGCUAACUGUUAUUGUUCUGC..................................... len:24 al:2
..........................................UGUUAUUGUUCUGCAUUcUCGGUGAAAUUGU.................... len:31 al:1
..........................................UGUUAUUGUUCUGCAUUAUCGGUGAAAUUGU.................... len:31 al:1
..........................................UGUUgUUGUUCUGCAUUAUCGGUGAAAUUGU.................... len:31 al:1
...................................................UCUGCAUUAUCGGUGAgAUUGU.................... len:22 al:2
...................................................UCUGCAUUAUCGGUGAAAcUGU.................... len:22 al:1
...................................................UCUGCAUUAUCGGUGAAAUUG..................... len:21 al:8
...................................................UCUGCAUUAUCGGUGAAAUUGUA................... len:23 al:1
...................................................UCUGCAUUAUCGGUGAAAUUGc.................... len:22 al:22
...................................................UCUGCAUUAUCGGUGAAAUUGU.................... len:22 al:132
...................................................UCUGCAUUAUCGGUGAAAU....................... len:19 al:1
...................................................UCUGCAUUAUuGGUGAAAUUGU.................... len:22 al:1
........................................................gUUAUCGGUGAAAUUGUAACUGUUGUCUCCU...... len:31 al:1
.........................................................................AACUGUUGUCUCCUGUUGUU len:20 al:3
.........................................................................AACUGUUGUCUCCUGUUGUc len:20 al:1