Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000009l:8857289-8857380 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_5466.ps.pdf
Locus Name: Cluster_5466
GUCUACGUGCGAAGUCGUUAUUAUGGAUAUCAGUUUUCUUUCAUAUUGAAAGUAGAACUAAUUUCCAUUACAAGGAUUUCUCACUUAAGGCG
((((..(((.((((((.((...(((((.((.((((((((((((...)))))).)))))).)).)))))...)).)))))).)))...)))). (-30.80)
....................UUAUGGAUAUCAGUUUUCUUUC.................................................. len:22 al:22
....................UUAUGGAUAUCAGUUUUCUUUCA................................................. len:23 al:3
....................UUAUGGAUAUCAGUUUUCUUc................................................... len:21 al:1
....................UUAUGGAUAUCAGUUUUC...................................................... len:18 al:1
....................UUAUGGAUAUCAGUUUUCU..................................................... len:19 al:1
....................UUAUGGcUAUCAGUUUUCUUUC.................................................. len:22 al:1
.........................................CAUAUUGAAAGUAGAACUgAUUUCC.......................... len:25 al:2
.................................................AAGUAGAACUAAUUUCCAUUACA.................... len:23 al:2
.................................................AAGUAGAgCUAAUUUCCAUUACAAGGAUU.............. len:29 al:1
..................................................AGUAGAACUAAUUUCCAUUACA.................... len:22 al:1