Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam
Location: ptg000009l:4940515-4940609 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_5386.ps.pdf
Locus Name: Cluster_5386
ACUGGUAAGCAGAAACAACCACGCUAACCUGCUUUCACUUCCAUUUAAUGCAAGUGAGAGAAGGUUAGUGUGGUUGUUUCUGUACAACUGAAAUU
...(((..((((((((((((((((((((((.(((((((((.(((...))).))))))))).))))))))))))))))))))))...)))...... (-50.90)
...................CACGCUAACCUGCUUUCACUUa...................................................... len:22 al:1
....................ACGCUAACCUGCUUUCACUUCCu.................................................... len:23 al:12
....................ACGCgAACCUGCUUUCACUUCC..................................................... len:22 al:2
....................ACGCUAgCCUGCUUUCACUUCC..................................................... len:22 al:1
....................ACGCUAACCUGCUUUCACUUCCAaU.................................................. len:25 al:2
....................gCGCUAACCUGCUUUCACUUCCA.................................................... len:23 al:2
....................ACGCUAACCUGCUUUCACUUCa..................................................... len:22 al:10
....................ACGCUAACCUGCUcUCACUUCCAUU.................................................. len:25 al:1
....................ACGCUAACCUGCUUUCACUUCCAUUUu................................................ len:27 al:1
....................ACGCUAgCCUGCUUUCACUUCCA.................................................... len:23 al:1
....................ACGCUAACCUGCUUUCACUU....................................................... len:20 al:11
....................ACGCUAACCUGCUUUCACUUCu..................................................... len:22 al:37
....................ACGCUgACCUGCUUUCACUUCCA.................................................... len:23 al:1
....................ACGCUAACCUGCUUUCgCUUCC..................................................... len:22 al:2
....................ACGCUAACCUGCUUUCACUUCCAUU.................................................. len:25 al:5
....................ACGCUAACCUGCUUcCACUUCCA.................................................... len:23 al:2
....................ACGCUAACCUGCUUUCACUUCCAUUUAAUG............................................. len:30 al:1
....................ACGCUAACCUGCUUUCACUUC...................................................... len:21 al:20
....................ACGCUAACCUGCUUUCACUUCC..................................................... len:22 al:99
....................AuGCUAACCUGCUUUCACUUCC..................................................... len:22 al:2
....................ACGCUAACCUGCUUUCACUUCCAUUa................................................. len:26 al:2
....................ACGCUAACCUGCcUUCACUUCC..................................................... len:22 al:2
....................ACGCUAACCUGCUUUCACUUCCc.................................................... len:23 al:1
....................ACGCcAACCUGCUUUCACUUC...................................................... len:21 al:1
....................ACGCUAACCUGCUUUCACUUCCAa................................................... len:24 al:2
....................ACGCUAACCUGCUUUCACUUCCAU................................................... len:24 al:3
....................ACGCUAACCUGCUUUCACUUCCg.................................................... len:23 al:5
....................ACGCUAACCUGCUUUCACUUCCA.................................................... len:23 al:354
....................ACGCUgACCUGCUUUCACU........................................................ len:19 al:1
....................ACGCUAACCUGCUcUCACUUCC..................................................... len:22 al:2
....................ACGCUAACCUGCUUUCACUUu...................................................... len:21 al:3
....................ACGCUAACCUGCUUUCgCUUCCA.................................................... len:23 al:2
....................ACGCUAACCUGCUUUCACU........................................................ len:19 al:7
....................ACGCUAACCUGCUUUCACcUCCA.................................................... len:23 al:1
....................ACGCUAACCUGCUUUCACUc....................................................... len:20 al:4
....................ACGCUAACCUGuUUUCACUUCCA.................................................... len:23 al:1
.....................CGCUAACCUGCUUUCACUUu...................................................... len:20 al:1
.....................CGCUAACCUGCUUUCACUUCCA.................................................... len:22 al:12
.....................CGCUAACCUGCUUUCACUUCC..................................................... len:21 al:6
.....................CGCUAACCUGCUUUCACUUC...................................................... len:20 al:4
......................GCUAACCUGCUUUCACUUCC..................................................... len:20 al:2
......................GCUAACCUGCUUUCACUUCa..................................................... len:20 al:1
......................GCUAACCUGCUUUCACUU....................................................... len:18 al:2
......................GCUAACCUGCUUUCACUUCCA.................................................... len:21 al:4
.......................CUAACCUGCUUUCACUUCCA.................................................... len:20 al:2
.......................CUAACCUGCUUUCACUUCu..................................................... len:19 al:2
.......................CUAACCUGCUUUCACUUCC..................................................... len:19 al:1
........................UAACCUGCUUUCACUUCCA.................................................... len:19 al:1
.........................................CAUUUAAUGCAAGUGAGAGAAGGUUAGUGU........................ len:30 al:2
..........................................AUUUAAUGCAgGUGAGAGAAGGUUAGUGUGG...................... len:31 al:1
..........................................AUUUAAUGCAAGUGAGAGAAGGUUAGUGU........................ len:29 al:1
..........................................AUUUAAUGCAAGUGgGAGAAGGUUAGUGUGG...................... len:31 al:1
..........................................AUUUAAUGCAAGUGAGAGAAGGUUAGUGUG....................... len:30 al:1
..........................................AUUUAAUGCAAGUGAGAGAAGGUUAGUGUGG...................... len:31 al:14
...........................................UUUAAUGCAAGUGAGAGAAGGUUAGUGUG....................... len:29 al:1
...........................................UUUAAUGCAAGUGAGAGAAGGUUAGUGUGG...................... len:30 al:3
...........................................UUUAAUGCAAGUGAGAGAAGGUUAGUGU........................ len:28 al:2
.............................................UAAUGCAAGUGAGAGAAGGUUAGUGUGG...................... len:28 al:2
..............................................AAUGCAAGUGAGAGAAGGUUAGUGUGG...................... len:27 al:3
...............................................AUGCAAGUGAGAGAAGGUUAGUGUGG...................... len:26 al:1
...............................................AUGCAAGUGAGAGAAGGUUAGUGU........................ len:24 al:1
.................................................aCAAGUGAGAGAAGGUUAGUGUGG...................... len:24 al:1
.................................................cCAAGUGAGAGAAGGUUAGUGUGGU..................... len:25 al:1
.................................................cCAAGUGAGAGAAGGUUAGUGU........................ len:22 al:1
.................................................cCAAGUGAGAGAAGGUUAGUG......................... len:21 al:1
.................................................cCAAGUGAGAGAAGGUUAGUGUGG...................... len:24 al:5
.................................................GCAAGUGAGAGAAGGUUAGU.......................... len:20 al:1
.................................................uCAAGUGAGAGAAGGUUAGUGUGG...................... len:24 al:1
..................................................CAAGUGAGAGAAGaUUAGUGUGG...................... len:23 al:9
..................................................CAAGUGAGAGcAGGUUAGUGUGG...................... len:23 al:15
..................................................CAAGUGAGAcAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAcAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGcGAGAGAAGGUUAGUGUGGU..................... len:24 al:1
..................................................CgAGUGAGAGAAGGUUAGU.......................... len:19 al:1
..................................................CAAGUGAGgGAAGGUUAGUG......................... len:20 al:1
..................................................CAAGUGcGAGAAGGUUAGUGUG....................... len:22 al:1
..................................................CgAGUGAGAGAAGGUUAGUGU........................ len:21 al:9
..................................................CAAGUGAGAGAcGGUUAGUGUGGU..................... len:24 al:1
..................................................CgAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:89
..................................................CAAGUGAGAGAAGGUUuGU.......................... len:19 al:1
..................................................CAAGUGAcAGAAGGUUAGUGUGG...................... len:23 al:2
..................................................CAAGUGAGAGAAGGUUAaUGUG....................... len:22 al:1
..................................................CAAaUGAGAGAAGGUUAGUGUGG...................... len:23 al:6
..................................................CAAGUGAGAGAAGGUUAGUGUGu...................... len:23 al:1287
..................................................CAAGUGAGAGAAGGUUAGcGUG....................... len:22 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUGGcU.................... len:25 al:1
..................................................CAAGUGAGAGAAGuUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUc....................... len:22 al:3
..................................................CAAGUGgGAGAAGGUUAGUGUGG...................... len:23 al:88
..................................................CAAGUGAuAGAAGGUUAGUGUGG...................... len:23 al:2
..................................................CAAGUGAGAGgAGGUUAGUGU........................ len:21 al:10
..................................................uAAGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:1
..................................................CAcGUGAGAGAAGGUUAGUGUGG...................... len:23 al:11
..................................................CAAGUGAGAGAAGGUUcGUGU........................ len:21 al:1
..................................................CAAGUGAGAGgAGGUUAGUGUG....................... len:22 al:2
..................................................gAAGUGAGAGAAGGUUAGUGU........................ len:21 al:2
..................................................CAAGUGuGAGAAGGUUAGUGUGG...................... len:23 al:15
..................................................CAAuUGAGAGAAGGUUAGUGUGG...................... len:23 al:2
..................................................CAAGUGAGAGAAGGUUAuU.......................... len:19 al:1
..................................................CAAGUGAGAGAAGGUUgGUGUGG...................... len:23 al:70
..................................................CAAGUGAGAGAAGGUUAGUGcGG...................... len:23 al:64
..................................................gAAGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUUAGg.......................... len:19 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUc................... len:26 al:3
..................................................CAAGUGAGAGAAGGUUAu........................... len:18 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUGaU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUUAGUaU........................ len:21 al:4
..................................................CAgGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGuU..................... len:24 al:41
..................................................CAAGUGAGAGAAGGUUAGgGU........................ len:21 al:4
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUuU.................. len:27 al:5
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUuUU................. len:28 al:2
..................................................CAAGUGAGgGAAGGUUAGUGUGG...................... len:23 al:112
..................................................CgAGUGAGAGAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGGUc............................. len:16 al:1
..................................................CAAGUGAGAGAAaGUUAGUGUGG...................... len:23 al:12
..................................................CAAGUGAGAGAAaGUUAGUGU........................ len:21 al:2
..................................................CAAGUGAGAGAAGGUUAGUGaGG...................... len:23 al:6
..................................................CAAGaGAGAGAAGGUUAGUGUGG...................... len:23 al:3
..................................................CgAGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:5
..................................................CAAGUGgGAGAAGGUU............................. len:16 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGGUc.................... len:25 al:13
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUcU.................. len:27 al:1
..................................................CAAGUGAGcGAAGGUUAGU.......................... len:19 al:1
..................................................CAAGUGuGAGAAGGUUAGU.......................... len:19 al:1
..................................................CAAGUGAGcGAAGGUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGGgU.................... len:25 al:1
..................................................CAAGUGAGAGAAGGUcAGUGUGGU..................... len:24 al:2
..................................................CAAGUGAGAGAAGGUUAaUGUGG...................... len:23 al:13
..................................................CAAGUGAGAGAcGGUUAGUGUGG...................... len:23 al:8
..................................................CAgGUGAGAGAAGGUUAGUGUGG...................... len:23 al:59
..................................................CAAGUGAGAGAgGGUUAGUGUGGUU.................... len:25 al:1
..................................................CAAGUGAGAGAgGGUUAGUGUGG...................... len:23 al:93
..................................................CAAGUGAGAGAAGGUUAGUGUGa...................... len:23 al:3100
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUa................... len:26 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUGGUa.................... len:25 al:19
..................................................CAAGUGAGAGAgGGUUAGUGUG....................... len:22 al:1
..................................................aAAGUGAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGaUUAGUGU........................ len:21 al:3
..................................................CAAGUGAGAGAAGGUUAGUaUGG...................... len:23 al:12
..................................................CAAGUGAGAGAAGGUUAGUGUa....................... len:22 al:25
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUu................... len:26 al:21
..................................................CAAGUGAGAGAAGGUUAGUGc........................ len:21 al:310
..................................................CAAGUGuGAGAAGGUUAGUGU........................ len:21 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUuUUUC............... len:30 al:2
..................................................CAAGUGAGAGAuGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGuUUAGUGUGG...................... len:23 al:7
..................................................CAAGUGAGAGAAGGUUAGUGUuG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUAGc.......................... len:19 al:19
..................................................CAAGUGgGAGAAGGUUAGUGUGGU..................... len:24 al:5
..................................................CAAGUGAGAGAAGGUUAGUG......................... len:20 al:116
..................................................CAAGUGAGAGAAGGUU............................. len:16 al:2
..................................................CAAGUGAGAGAAGaUUAGUGUGGUU.................... len:25 al:1
..................................................CAAGUGAGAGuAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUUAGUGcGGU..................... len:24 al:2
..................................................CAAGUGAGcGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGuUU.................... len:25 al:13
..................................................CAAGUGAGAGAAGGUUAGUGaGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUcAGUGUGG...................... len:23 al:41
..................................................CAAGUGAGgGAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUcGU..................... len:24 al:2
..................................................CAAGUGAGAGAAGGaUAGUGUGG...................... len:23 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUGGa..................... len:24 al:63
..................................................CAAGUGAGAGAAGGUUAGUGgGG...................... len:23 al:12
..................................................CAAGUGAGAGAAGGUUAGUGUG....................... len:22 al:295
..................................................CAAGUGAGAGAAGGUUAGUGUaG...................... len:23 al:46
..................................................CAAGUGAGAGAAGGUUAGcGUGGUU.................... len:25 al:2
..................................................CAAGUGAGAGuAGGUUAGUGUGGUU.................... len:25 al:1
..................................................CAAGUGAGAGAAGGUUAGa.......................... len:19 al:9
..................................................CAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:23193
..................................................CAAGUGAGAGAAGGUUAGaGUGG...................... len:23 al:1
..................................................CAAGUGAaAGAAGGUUAGUGUG....................... len:22 al:2
..................................................CcAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:12
..................................................CAAGUGAGAGAgGGUUAGUGU........................ len:21 al:20
..................................................CAAGUGAGcGAAGGUUAGUGUGG...................... len:23 al:15
..................................................CAAGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:517
..................................................CAAGUGAGAGAAGGUUAG........................... len:18 al:35
..................................................CAAGUGAGAGAAGGUUAGUGUGGaU.................... len:25 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUGGUaGU.................. len:27 al:1
..................................................CAAGUGAGAGuAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGGUgAGUGUGG...................... len:23 al:3
..................................................CAAGUaAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAcGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:1
..................................................gAAGUGAGAGAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGgGAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGuAGGUUAGUGUGG...................... len:23 al:10
..................................................CAAGUGAGAGAAGGUUAGgGUGG...................... len:23 al:3
..................................................CAgGUGAGAGAAGGUUAGUGU........................ len:21 al:5
..................................................gAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:18
..................................................CAAGUGAGAGAAGGUcAGUGU........................ len:21 al:4
..................................................CAAGUGAGgGAAGGUUAGUGU........................ len:21 al:12
..................................................CAAGcGAGAGAAGGUUAGUGU........................ len:21 al:14
..................................................CAAGUGAGAGAAGGUUAuUGUGG...................... len:23 al:3
..................................................CAAcUGAGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUUAaUGU........................ len:21 al:2
..................................................CAAGUGAGAGAAGGUUgGUGUG....................... len:22 al:2
..................................................CAAGUGAGAGAAGGUUAGcGU........................ len:21 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUGGc..................... len:24 al:59
..................................................CuAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:21
..................................................CAAGUGAGAGAAGGUUAGUuUGG...................... len:23 al:2
..................................................CAAGUGAGAGAAGGUUAGU.......................... len:19 al:234
..................................................CAAGUGAGAGAAGGUUAGUGUGcU..................... len:24 al:5
..................................................aAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:4
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUaU.................. len:27 al:2
..................................................CAAGUGAGAGAAGGUUcGUGUGG...................... len:23 al:10
..................................................CAAGUGAGAGAcGGUUAGUGU........................ len:21 al:3
..................................................CAAGUGAaAGAAGGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUu....................... len:22 al:16
..................................................CAAGUGAGAaAAGGUUAGUGUGG...................... len:23 al:7
..................................................CAAGUGAGAGAAGGUUAGUu......................... len:20 al:7
..................................................CAAGUGAGAGAAGGUUgGU.......................... len:19 al:2
..................................................CAAGUaAGAGAAGGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUgGUGU........................ len:21 al:7
..................................................CAAGUGAGAGAAGGUUuGUGUGG...................... len:23 al:11
..................................................CAAGUGAGAGAAGGUUAGUGUGGaUGU.................. len:27 al:1
..................................................CAAGUuAGAGAAGGUUAGUGUGG...................... len:23 al:4
..................................................uAAGUGAGAGAAGGUUAGUGU........................ len:21 al:3
..................................................CAAGUGAGAGAAGGUUAGUGU........................ len:21 al:2757
..................................................CAAGUGAGAGgAGGUUAGUGUGGU..................... len:24 al:3
..................................................CAAGUGAGAGAAGGUUAGaGUGGUU.................... len:25 al:1
..................................................CcAGUGAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGGUUuUUU................ len:29 al:1
..................................................CAAGUGAGAGAAGGcUAGUGU........................ len:21 al:4
..................................................CAAGUGAGAGAAGGgUAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGgAGGUUAGUGUGG...................... len:23 al:112
..................................................CAAGUGAGAuAAGGUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGaUU.................... len:25 al:1
..................................................CAAGUGAGAGAAGGUUAGUGa........................ len:21 al:37
..................................................CAAGUGAGAGAAGGUUAGUGg........................ len:21 al:23
..................................................CAAGUGAGuGAAGGUUAGUGUGG...................... len:23 al:10
..................................................CAAGUGAGAGAAGGUUgGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGuGAAGGUUAGUGU........................ len:21 al:3
..................................................CAAGUGAGAGAAGGUUAGUc......................... len:20 al:1
..................................................CgAGUGAGAGAAGGUUAGUG......................... len:20 al:1
..................................................CuAGUGAGAGAAGGUUAGUGU........................ len:21 al:5
..................................................CAAGUGcGAGAAGGUUAGUGUGG...................... len:23 al:8
..................................................CAAGUGAGAGAAGGUUAGUGUGc...................... len:23 al:264
..................................................CAAGUGgGAGAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGgGAGAAGGUUAGUGU........................ len:21 al:13
..................................................CAAGUGAGAGAAGGcUAGU.......................... len:19 al:3
..................................................CAAGUGAGAGAAcGUUAGUGU........................ len:21 al:1
..................................................CAuGUGAGAGAAGGUUAGUGUGG...................... len:23 al:9
..................................................CAAGUGAGAGAAGGUUAGUGUGGUU.................... len:25 al:66
..................................................CAAGcGAGAGAAGGUUAGUGUGG...................... len:23 al:53
..................................................CAAGUGAGAuAAGGUUAGUGUGG...................... len:23 al:5
..................................................CAAGUGAGAGAAGaUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUUAGUcUGG...................... len:23 al:2
..................................................CAAGUGAGAGAgGGUUAG........................... len:18 al:1
..................................................CAAGUGAGAGuAGGUUAGU.......................... len:19 al:1
..................................................CAAGUGAGAGAAGGUUAGcGUGG...................... len:23 al:69
..................................................CAAGgGAGAGAAGGUUAGUGUGG...................... len:23 al:4
..................................................CAAGUGAGAGAAGGUUAGUGUcG...................... len:23 al:27
..................................................CAAGUGAGAGAAGGUaAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGcAGGUUAGUGU........................ len:21 al:3
..................................................CAAGUGAGAGAAGGcUAGUGUGG...................... len:23 al:57
..................................................CAAaUGAGAGAAGGUUAGUGU........................ len:21 al:2
..................................................uAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:38
..................................................CAAGUGAGAGAAGGUUAGUa......................... len:20 al:2
..................................................CAAGUGAGAGgAGGUUAGU.......................... len:19 al:2
..................................................CAAGUGAGAGAAGGUUAGUcU........................ len:21 al:4
..................................................CAAGUGAGAGAAuGUUAGUGUGG...................... len:23 al:7
..................................................CAAGUGAGAGAAGGUUAGUGUGGg..................... len:24 al:6
...................................................AAcUGAGAGAAGGUUAGUGUGG...................... len:22 al:1
...................................................AAGUGAGAGAAGGUUAGUGU........................ len:20 al:26
...................................................AAGUGAGAGAAGGUUAGUGUGc...................... len:22 al:1
...................................................AAGUGAGgGAAGGUUAGUGUGG...................... len:22 al:1
...................................................AAGcGAGAGAAGGUUAGUGUGG...................... len:22 al:2
...................................................AAGUGAGAGAAGGUUAGUGUGGc..................... len:23 al:2
...................................................AAGUGAGAGAAGGUUAGUGUGGU..................... len:23 al:9
...................................................AAGUGAGAaAAGGUUAGUGUGG...................... len:22 al:1
...................................................AAGUGgGAGAAGGUUAGUGUGG...................... len:22 al:1
...................................................AAGaGAGAGAAGGUUAGUGUGG...................... len:22 al:1
...................................................AAGUGAGAGAAGGUUAGUGUG....................... len:21 al:4
...................................................AAGUGAGAGAAGGUUAGUGUGu...................... len:22 al:15
...................................................AgGUGAGAGAAGGUUAGUGUGG...................... len:22 al:1
...................................................AAGUGAGAGAAGGUUAGUGUGGaU.................... len:24 al:1
...................................................AAGUGAGAGAAGGUUAGU.......................... len:18 al:6
...................................................AAGUGAGAGAAGGUUAGUGUGG...................... len:22 al:174
...................................................AAGUGAGAGAAGGUUAGUGUGa...................... len:22 al:28
...................................................AAGUGAGAaAAGGUUAGUGUGGU..................... len:23 al:1
...................................................AAGUGAGAGAAGGUUAGUGUa....................... len:21 al:2
...................................................AAGUGAGAGAAGGUUAGUG......................... len:19 al:3
...................................................AAGUGAGAGAAGGUUAGUGc........................ len:20 al:5
...................................................AAGUGAGAGAcGGUUAGUGUGG...................... len:22 al:1
...................................................gAGUGAGAGAAGGUUAGUGUGG...................... len:22 al:1
...................................................AAGUGAGAGAAGGUUAGUGUGuU..................... len:23 al:1
....................................................AGUGAGAGAAGGUUAGUGUGu...................... len:21 al:17
....................................................AGUGAGAGAAGGUUAGUGUG....................... len:20 al:1
....................................................AGUGAGAGAAGGUUgGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUgGUGUG....................... len:20 al:1
....................................................AGUGAGuGAAGGUUAGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGUGa...................... len:21 al:25
....................................................AGUGAGAGAAGGUUAGUGUGc...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGUGuU..................... len:22 al:6
....................................................AGUGAGAGAAGGUUAGcGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGUa....................... len:20 al:1
....................................................AGUGAGAGAAGGUUAGUGUGGUU.................... len:23 al:1
....................................................AGUGAGAGAAGGcUAGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGcGGU..................... len:22 al:1
....................................................AGUGAGAGAAGGUUAGUGU........................ len:19 al:38
....................................................AGUGAGAGAAGGUcAGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGUGGc..................... len:22 al:2
....................................................AGUGAGAGAAGGUUAGUGUGG...................... len:21 al:226
....................................................AGcGAGAGAAGGUUAGUGUGG...................... len:21 al:1
....................................................AGUGAuAGAAGGUUAGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGUGGUa.................... len:23 al:1
....................................................AGUGAGAGAAGGUUAGUGUGGU..................... len:22 al:13
....................................................AGUGAGAGAAGGUUAGUGUGGUUu................... len:24 al:2
....................................................AGUGAGAGAAGGUUAGUGa........................ len:19 al:1
....................................................AGUGAGAGAAGGUUAGUGUcG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGc........................ len:19 al:2
.....................................................GUGAGAGAAGGUUAGUGUGuU..................... len:21 al:1
.....................................................GUGAGAGgAGGUUAGUGUGG...................... len:20 al:2
.....................................................GUGAGAGAAGGUUAGUGUGGUUuUU................. len:25 al:1
.....................................................GUGAGAGAAGGUUAGUGc........................ len:18 al:1
.....................................................GUGAGcGAAGGUUAGUGUGG...................... len:20 al:1
.....................................................GUGAGAGAAGGUUAGUGUGGUa.................... len:22 al:1
.....................................................GUGcGAGAAGGUUAGUGUGGU..................... len:21 al:1
.....................................................GUGAGAGAAGGUUAGUGUGu...................... len:20 al:2
.....................................................GUGAGAGAAGGUUAGUGUGa...................... len:20 al:2
.....................................................GUGAGAGAAGGUUAGUGUGGUU.................... len:22 al:2
.....................................................GUGAGAGAAGGUUAGUGUGGU..................... len:21 al:4
.....................................................GUGAGAGAAGGUUAGUGU........................ len:18 al:1
.....................................................GUGAGAGAAGGUUAGUGUGG...................... len:20 al:7
......................................................UGAGAGAAGGUUAGUGUGGUa.................... len:21 al:1
......................................................UGAGAGAAGGUUAGUGUGu...................... len:19 al:4
......................................................UGgGAGAAGGUUAGUGUGG...................... len:19 al:1
......................................................UGAGAGAAGGUUAGUGUGGUUuU.................. len:23 al:1
......................................................UGAGAGAAGGUUAGUGUGGUU.................... len:21 al:3
......................................................UGAGcGAAGGUUAGUGUGG...................... len:19 al:1
......................................................UGAGAGAAGGUUAGUGU........................ len:17 al:1
......................................................UGAGAGAAGGUUAGUGUGG...................... len:19 al:9
.......................................................GAGAGAAGGUUAGUGUGG...................... len:18 al:4
.........................................................................UUGUUUCUGUACAACUGAAAUU len:22 al:3