Genome: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/data/Apulchra-genome.fa Alignments: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/merged_alignments.bam Location: ptg000009l:616579-616673 minus PDF file name: /home/shared/8TB_HDD_02/shedurkin/timeseries_molecular/D-Apul/output/11-Apul-sRNA-ShortStack_4.1.0-pulchra_genome/ShortStack_out/strucVis/Cluster_5304.ps.pdf Locus Name: Cluster_5304 UGAAAAUUGGCCAUAGUCACAUUUCACUAGAUAAGCGCUAACUGUUAUUGUUCUGCGUUAUCGGUGAAAUUGUAACUGUUGCCUUCUAUUGCUUU ........(((.(((((.((((((((((.(((((.(((.(((.......)))..))))))))))))))).))).))))).)))............ (-28.20) UGAAAAUUGGCCAUAGUCAC........................................................................... len:20 al:7 UGAAAAUUGGCCAUAGUCAu........................................................................... len:20 al:1 .GAAAAUUGGCCAUAGUCAu........................................................................... len:19 al:2 .GAAAAUUGGCCAUAGUCAC........................................................................... len:19 al:20 ..AAAAUUGGCCAUAGUCAC........................................................................... len:18 al:1 ..................uCAUUUCACUAGAUAAGCGCUAAC..................................................... len:24 al:1 ..................ACAUUUCACUAGAUAAGCGCU........................................................ len:21 al:1 ...................aAUUUCACUAGAUAAGCGCUAAC..................................................... len:23 al:2 ...................CAUUUCACUAGAUAAGCGCUAAC..................................................... len:23 al:7 ....................AUUUCACUAGAUAAGCGCgAAC..................................................... len:22 al:1 ....................AUUUCACUAGAUAAGCGCUAACc.................................................... len:23 al:54 ....................AUUUCACUAGAgAAGCGCUAAC..................................................... len:22 al:1 ....................AUUUCACUAGAUAAaCGCU........................................................ len:19 al:1 ....................AUcUCACUAGAUAAGCGCU........................................................ len:19 al:2 ....................AUUUCACUAGAUAAGCGCUAACUG................................................... len:24 al:2 ....................AUUUCACUAGAUAAGCGCUAACUGU.................................................. len:25 al:11 ....................AUUUCACUAGAUAAGCGCUuAC..................................................... len:22 al:8 ....................AUUUCACgAGAUAAGCGCUAAC..................................................... len:22 al:6 ....................AUUUCACUAGAUAAGCGu......................................................... len:18 al:12 ....................AUUUCACaAGAUAAGCGCUAAC..................................................... len:22 al:1 ....................AUUUCACUAGAUAAGC........................................................... len:16 al:1 ....................AUUUCAaUAGAUAAGCGCUAAC..................................................... len:22 al:20 ....................AUUUCACUAGAUAAGCGCUAACUuU.................................................. len:25 al:2 ....................AUUUCACcAGAUAAGCGCUAAC..................................................... len:22 al:17 ....................AUUUCACUAGAUAAGCGCaAAC..................................................... len:22 al:1 ....................AUUUCgCUAGAUAAGCGCUAAC..................................................... len:22 al:44 ....................AUUUgACUAGAUAAGCGCUAAC..................................................... len:22 al:3 ....................AUUUCACcAGAUAAGCGCUAACU.................................................... len:23 al:1 ....................AcUUCACUAGAUAAGCGCUAAC..................................................... len:22 al:39 ....................AUUUCACUAGAaAAGCGCUAAC..................................................... len:22 al:1 ....................AUUUCACUAGAUAAGCGCUAAa..................................................... len:22 al:53 ....................AUcUCACUAGAUAAGCGCUAAC..................................................... len:22 al:42 ....................AUUUCACUAGuUAAGCGCUAAC..................................................... len:22 al:1 ....................gUUUCACUAGAUAAGCGCUAA...................................................... len:21 al:1 ....................AaUUCACUAGAUAAGCGCUAAC..................................................... len:22 al:1 ....................AUUUCACUAGAUAAGCuCUAAC..................................................... len:22 al:7 ....................AUUUCACUAGAUAAGCGuUAAC..................................................... len:22 al:8 ....................AUUUCcCUAGAUAAGCGCUAAC..................................................... len:22 al:13 ....................AUUUCACUAGAUAAGCGCUgAC..................................................... len:22 al:52 ....................AUUUCACUAGAUAAGCGCcA....................................................... len:20 al:3 ....................AUUUCACUAGAUAAGCGC......................................................... len:18 al:74 ....................AUUcCACUAGAUAAGCGCUAAC..................................................... len:22 al:56 ....................cUUUCACUAGAUAAGCGCUAAC..................................................... len:22 al:10 ....................AUcUCACUAGAUAAGCGCUA....................................................... len:20 al:2 ....................AUcUCACUAGAUAAGCGC......................................................... len:18 al:1 ....................AUUUCACUAGAUuAGCGCUAACU.................................................... len:23 al:1 ....................AUUUCACUAGAUAAGCGCUAuC..................................................... len:22 al:8 ....................AUUUCACUcGAUAAGCGCUAAC..................................................... len:22 al:24 ....................AUUUCACUAGAUAAGCcCU........................................................ len:19 al:1 ....................AUUUCACUAGAUAAGaGCUAAC..................................................... len:22 al:3 ....................AUUUCACUAGAUAAGCGCc........................................................ len:19 al:35 ....................AUUUCACcAGAUAAGCGCUA....................................................... len:20 al:1 ....................AUUUCACUAGAUAAGuGCUAAC..................................................... len:22 al:26 ....................AUUUCACUAGAUAAaCGCUAAC..................................................... len:22 al:9 ....................AUUgCACUAGAUAAGCGCUAAC..................................................... len:22 al:1 ....................AUUUCACUAGAUAAGCGCUAACUGUU................................................. len:26 al:15 ....................AUcUCACUAGAUAAGCGCUAACU.................................................... len:23 al:3 ....................uUUUCACUAGAUAAGCGCUAAC..................................................... len:22 al:12 ....................AUUUCgCUAGAUAAGCGCUAA...................................................... len:21 al:1 ....................gUUUCACUAGAUAAGCGCU........................................................ len:19 al:2 ....................AcUUCACUAGAUAAGCGCUAACU.................................................... len:23 al:3 ....................AUUUCACUAGAUAAGCGCUAACUGg.................................................. len:25 al:3 ....................AUUUCACUAGAUAAGCGCUAACUGa.................................................. len:25 al:4 ....................AUUUCAuUAGAUAAGCGC......................................................... len:18 al:1 ....................AUUUCACUAGAUAAGCGCcAACUGUU................................................. len:26 al:1 ....................AcUUCACUAGAUAAGCGCU........................................................ len:19 al:1 ....................AUUUCACUAGAUAAGCGCUA....................................................... len:20 al:86 ....................AUUUCACUAGAUAcGCGCUAACU.................................................... len:23 al:1 ....................AUUUCACUAGAUAAGCGCUcAC..................................................... len:22 al:6 ....................AUUaCACUAGAUAAGCGCUAAC..................................................... len:22 al:2 ....................AUUUCACUAGAUAAGCGCUu....................................................... len:20 al:2 ....................AUUUCACUAGAUAAGCGuUAACU.................................................... len:23 al:2 ....................AUUUCACUAGAUAAGgGCUAACU.................................................... len:23 al:1 ....................AgUUCACUAGAUAAGCGCUAAC..................................................... len:22 al:3 ....................AUUUCACUAGAUAAGCGCg........................................................ len:19 al:5 ....................AUUUCACUAGAUAAGCGCUAgCU.................................................... len:23 al:1 ....................AUUUCACUAGAUAAGCGCU........................................................ len:19 al:346 ....................AUUUCACUAGAUAAGCGCUAACUGUUAUU.............................................. len:29 al:12 ....................AUUUCACUAGAUAAGCGCUAAC..................................................... len:22 al:16800 ....................AUUUCACUAGAUAgGCGCUAAC..................................................... len:22 al:58 ....................AUUUCACUAGcUAAGCGCUAAC..................................................... len:22 al:12 ....................AUUUCACUAGAUAAGCuCUAACU.................................................... len:23 al:2 ....................AUUUCACUAGgUAAGCGCUA....................................................... len:20 al:1 ....................AUUUCACUAGAUAAGCGCUAACUGc.................................................. len:25 al:4 ....................AUUUCACUAGAUAAGCGCUAACa.................................................... len:23 al:338 ....................AUUUCACUAGAUAAGgGCUAAC..................................................... len:22 al:2 ....................AUUUCACUAGAcAAGCGCU........................................................ len:19 al:3 ....................AUUUCACUAGAUAAGCGCUAA...................................................... len:21 al:87 ....................AUUUCACUAGAUAAGCGCUAAuU.................................................... len:23 al:1 ....................AUUUCACUAGAUAAGCGaUA....................................................... len:20 al:1 ....................AUUUCACUAGAUuAGCGCUAAC..................................................... len:22 al:7 ....................AUUUCACUAGgUAAGCGCUAACU.................................................... len:23 al:1 ....................AUUUCACUAGAUAAGCGCcAAC..................................................... len:22 al:20 ....................AUUUCACUAGAUAAGCGCUAACU.................................................... len:23 al:469 ....................AUUUCACUAGAUAcGCGCUAAC..................................................... len:22 al:17 ....................AUUUCcCUAGAUAAGCGCU........................................................ len:19 al:1 ....................AUUUCACUAGAUAAGCGCUAgC..................................................... len:22 al:40 ....................AUUUCACUAGAUAAGCGCUAAg..................................................... len:22 al:1 ....................gUUUCACUAGAUAAGCGCUAAC..................................................... len:22 al:74 ....................AUUUCcCUAGAUAAGCGCUAA...................................................... len:21 al:1 ....................AUUUCACUAGAUcAGCGCUAAC..................................................... len:22 al:5 ....................AUUUCACUAGAUAAGCcCUAAC..................................................... len:22 al:2 ....................AUUUCACUAGAUAAGCGCUcACU.................................................... len:23 al:1 ....................AUUUCACUAGAUAAGCGCUAu...................................................... len:21 al:1 ....................AUUUuACUAGAUAAGCGCUAAC..................................................... len:22 al:6 ....................AUUUCACUAGgUAAGCGC......................................................... len:18 al:1 ....................AUUUCACUAGAUAAGCGCUAACUa................................................... len:24 al:8 ....................AUUUCACUgGAUAAGCGCUAAC..................................................... len:22 al:42 ....................AUUUCACUAGAUAgGCGCU........................................................ len:19 al:3 ....................AUUUCACUAGgUAAGCGCUAAC..................................................... len:22 al:43 ....................AUUUCACUAGAUAuGCGCUAAC..................................................... len:22 al:6 ....................AUUUCACUAGAUAAGCGCUgA...................................................... len:21 al:1 ....................AUUUCACUgGAUAAGCGCUAACU.................................................... len:23 al:4 ....................AUUcCACUAGAUAAGCGCUAACU.................................................... len:23 al:1 ....................AUUUCACUAGAUAAGCGaUAAC..................................................... len:22 al:3 ....................AUUUCACUAGAUAAGCGCa........................................................ len:19 al:21 ....................AUUUCACUuGAUAAGCGCUAAC..................................................... len:22 al:3 ....................AUUUCACcAGAUAAGCGCUAA...................................................... len:21 al:2 ....................AUUUCACUAaAUAAGCGCUAAC..................................................... len:22 al:6 ....................AUUUCACUAGAUAAGCGCUAg...................................................... len:21 al:1 ....................AUUUCACUAGAcAAGCGCUAAC..................................................... len:22 al:18 ....................AUUUCACUAGAUAAGCGCUAAu..................................................... len:22 al:475 ....................AUUUCACUAGAUAAGCGCUAACUu................................................... len:24 al:6 ....................AUUUCACUAGAUAgGCGCUAACU.................................................... len:23 al:2 ....................AUUUCACUAGAUAAGCGCUAcC..................................................... len:22 al:6 ....................AUUUCAgUAGAUAAGCGCUAAC..................................................... len:22 al:1 ....................AUUUCACUAGAUAAuCGCUAAC..................................................... len:22 al:2 ....................AUUUCACUAGAUAAGCGCUAACUc................................................... len:24 al:1 ....................AUUUCAuUAGAUAAGCGCUAAC..................................................... len:22 al:9 ....................AUcUCACUAGAUAAGCGCUAA...................................................... len:21 al:1 ....................AUUUCACUAGAUAAGCGCUAACUGUUA................................................ len:27 al:12 ....................AUUUCACUAGAUAAGCaCUAAC..................................................... len:22 al:25 ....................AUUUCuCUAGAUAAGCGCUAAC..................................................... len:22 al:1 ....................AUUUCACUAGAUAAGCGCUAACg.................................................... len:23 al:13 ....................AUUUCACUAGAUAAGCGCUAACUGUc................................................. len:26 al:3 ....................AUUUCACUAGAUAuGCGC......................................................... len:18 al:1 ....................AUUUCACUAGAUAAGCGuU........................................................ len:19 al:3 .....................UUUCACUAGAUAAGCGCUAACc.................................................... len:22 al:1 .....................UUUCACUAGAUAAGCGCUAACa.................................................... len:22 al:4 .....................UUUCACUAGAUAAGCGCUAACUGUUAUUGU............................................ len:30 al:1 .....................UUUCACUAGAUAAGCGCU........................................................ len:18 al:2 .....................UUUCACUAGAUAAGCGCUAAC..................................................... len:21 al:30 .....................aUUCACUAGAUAAGCGCUAAC..................................................... len:21 al:4 .....................cUUCACUAGAUAAGCGCUAAC..................................................... len:21 al:2 .....................UUUCACUAGAUAAGCGCUA....................................................... len:19 al:1 .....................UUUCgCUAGAUAAGCGCUAACU.................................................... len:22 al:1 .....................UUUCACUAGAUAAGCGCUAACU.................................................... len:22 al:4 ......................UUCACUAGAUAAGCGCUAACU.................................................... len:21 al:9 ......................UUCACUAGAUAAGCGCUA....................................................... len:18 al:4 ......................UUCACUAGAUAAGCGCUAAC..................................................... len:20 al:17 .......................UCACUAGAUAAGCGCUAAu..................................................... len:19 al:1 ........................CACUAGAUAAGCGCUAAC..................................................... len:18 al:1 ...............................UAAGCGCUAACUGUUAUUGUUC.......................................... len:22 al:2 .................................AGCGCUAACUGUUAUUGUUCUGC....................................... len:23 al:1 .....................................CUAACUGUUAUUGUUCUGCGUUAUCGGU.............................. len:28 al:1 .......................................AACUGUUAUUGUUCUGCGUUAUCGGU.............................. len:26 al:1 .........................................CUGUUAUUGUUCUGCGUUAUCGGUGAAAU......................... len:29 al:2 .........................................CUGUUAUUGUUCUGCGUUAUC................................. len:21 al:1 .........................................CUGUUAUUGUUCUGCGUUAUCGGUGAAAUUG....................... len:31 al:1 .........................................CUGUUAUUGUUCUGCGUUAUCGGUGAA........................... len:27 al:2 .........................................CUGUUAUUGUUCUGCGUUAUCGGUGA............................ len:26 al:4 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUcG....................... len:30 al:3 ..........................................UGUUAUUGUUCUGCGUUAUCGGUG............................. len:24 al:25 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAgUUG....................... len:30 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUaGU...................... len:31 al:1 ..........................................UGUUAUUGUUCgGCGUUAUCGGUGAAAUUGU...................... len:31 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAg........................... len:26 al:1 ..........................................UGUUAUcGUUCUGCGUUAUCGGUGAAAUUG....................... len:30 al:2 ..........................................UGUUAUUGUUCUGCGUU.................................... len:17 al:2 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAgAUUG....................... len:30 al:4 ..........................................UGUUAUUGUUCUGCGUcAUCGGUGAAAUUG....................... len:30 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAcUGU...................... len:31 al:6 ..........................................UGUUAUUGUUCaGCGUUAUCGGUGAAAUUG....................... len:30 al:1 ..........................................UGUUAUUGUUCUGCGUcAUCGGUGAAAUUGU...................... len:31 al:7 ..........................................UGUUAUUGUUaUGCGUUAUCGGUGAAAUUGU...................... len:31 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGG............................... len:22 al:6 ..........................................UGUUAUUGUUCUuCGUUAUCGGUGAAAUUGU...................... len:31 al:1 ..........................................UGUUAUUGUUuUGCGUUAUCGGUGAAAUUGU...................... len:31 al:4 ..........................................UGcUAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:14 ..........................................UGUgAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:1 ..........................................UGaUAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:1 ..........................................UGUUAUUGUUCUGCGaUAUCGGUGAAAUUGU...................... len:31 al:1 ..........................................UGUUAUUGUUCUGCGUUcUCGGUGAAAUUGU...................... len:31 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUU........................ len:29 al:28 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGgAAUUGU...................... len:31 al:33 ..........................................UGUUAUUGUUCUGCGUUAUCGGgGAAAUUGU...................... len:31 al:1 ..........................................UGUUAUUGUUCUGCGcUAUCGGUGAAAUUGU...................... len:31 al:12 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUG....................... len:30 al:355 ..........................................UGUUAUUaUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:2 ..........................................UGUUAUUGUUCUGCGUUAUC................................. len:20 al:2 ..........................................UGUUAUUGUUCUGCGUUA................................... len:18 al:1 ..........................................UGUUAcUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:6 ..........................................aGUUAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:4 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUc........................ len:29 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAA........................... len:26 al:5 ..........................................UGUUAUUGUUCcGCGUUAUCGG............................... len:22 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAaUGU...................... len:31 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGgAAUUG....................... len:30 al:1 ..........................................UGUUAUUGUUCaGCGUUAUCGGUGAAAUUGU...................... len:31 al:3 ..........................................UGUUcUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:8 ..........................................UGUUAUUGUUCUGCGgUAUCGGUGAAAUUGU...................... len:31 al:2 ..........................................UGUUAUUGUUCUGCGUUAUCaGUGAAAUUGU...................... len:31 al:7 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUuU...................... len:31 al:3 ..........................................UGUUAUUGUUCUGCGcUAUCGGUGAAAUUG....................... len:30 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAuAUUGU...................... len:31 al:1 ..........................................UGUUAUUGUUCcGCGUUAUCGGUGAAAUUGU...................... len:31 al:19 ..........................................UGUUAUUGUUCUaCGUUAUCGGUGAAAUUGU...................... len:31 al:3 ..........................................UGUUAUUGUUCUGCGUUAUCuGUGAAAUUGU...................... len:31 al:3 ..........................................UGUUAUcGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:12 ..........................................UGUUAUUGUUCUGCGcUAUCGGUGAAAUU........................ len:29 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGA............................ len:25 al:48 ..........................................UGUUAUUGUUCUGCGUUAUCGGcGAAAUUG....................... len:30 al:1 ..........................................UGUUcUUGUUCUGCGUUAUCGGUGAAAUUG....................... len:30 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGuAAUUGU...................... len:31 al:3 ..........................................UGUUgUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:13 ..........................................UGUUAUUGUUCUGCGUUgUCGGUGAAAUUGU...................... len:31 al:9 ..........................................UGUUAUUGUUCUGCGUUAUCGaUGAAAUUGU...................... len:31 al:6 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUa....................... len:30 al:13 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUGa...................... len:31 al:50 ..........................................UGUcAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:5 ..........................................UGUUAaUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:2 ..........................................UGUUAUUGUUCUGCGUUAUCGGcGAAAUUGU...................... len:31 al:20 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAuUUGU...................... len:31 al:2 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUu....................... len:30 al:8 ..........................................UGUUAUUGUaCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:4 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:5569 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUcU...................... len:31 al:1 ..........................................UGUUAUUGUUCUGCGUUAUuGGUGAAAUUGU...................... len:31 al:6 ..........................................UaUUAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:6 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUcGU...................... len:31 al:8 ..........................................UGUUAUUGUUCUGCGUUAUCGGU.............................. len:23 al:19 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUaU...................... len:31 al:1 ..........................................UGUUAUUGUUCUGCGUUAUaGGUGAAAUUGU...................... len:31 al:1 ..........................................UGUUAUcGUUCUGCGUUAUCGGUGAAAUU........................ len:29 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAgUUGU...................... len:31 al:26 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAgU......................... len:28 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAA.......................... len:27 al:6 ..........................................UGUUAUUGUUCaGCGUUAUCGGUGAA........................... len:26 al:1 ..........................................UGUUAUUGUUCUGuGUUAUCGGUGAAAUUGU...................... len:31 al:8 ..........................................UGUUAUUGUUCUGaGUUAUCGGUGAAAUUGU...................... len:31 al:5 ..........................................UGUUAUUaUUCUGCGUUAUCGGUGAAAUUG....................... len:30 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAU......................... len:28 al:20 ..........................................UGUUAUUGUUCUGCGUUAUCaGUGAAAUUG....................... len:30 al:2 ..........................................UGUUAUUGUUCUGCGUUAUCcGUGAAAUUGU...................... len:31 al:1 ..........................................UGUUAUUGUUCcGCGUUAUCGGUG............................. len:24 al:2 ..........................................UGUUAUUGUcCUGCGUUAUCGGUGAAAU......................... len:28 al:1 ..........................................UGUUAUUGUUCUGuGUUAUCGGUGAAAUUG....................... len:30 al:2 ..........................................UGUUAUUGUUCUGCuUUAUCGGUGAAAUUGU...................... len:31 al:1 ..........................................cGUUAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:21 ..........................................UGUUAUUGUUCUGCcUUAUCGGUGAAAUUGU...................... len:31 al:1 ..........................................UGUcAUUGUUCUGCGUUAUCGGUGAAAUUG....................... len:30 al:2 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAgUGU...................... len:31 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGg............................ len:25 al:1 ..........................................aGUUAUUGUUCUGCGUUAUCGGUGA............................ len:25 al:1 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAcUUGU...................... len:31 al:3 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAgAUUGU...................... len:31 al:24 ..........................................UGUUAUUGUcCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:17 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUGg...................... len:31 al:28 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUGc...................... len:31 al:540 ..........................................UGUUAUUGUUCUGCGUUAcCGGUGAAAUUGU...................... len:31 al:4 ..........................................UGUUAUUGUUCUGCGUUAUCGGUGu............................ len:25 al:1 ..........................................UGUUAUaGUUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:3 ..........................................UGUcAUUGUUCUGCGUUAUCGGU.............................. len:23 al:2 ..........................................UGUUAUUGcUCUGCGUUAUCGGUGAAAUUGU...................... len:31 al:16 ...........................................GUUAUUGUUCUGCGUUAUCGGUGAAAUUGc...................... len:30 al:1 ...........................................GUUAUUGUUCUGCGUUAUCGGUGAAAUUG....................... len:29 al:2 ...........................................GUUAUUGUUCUGuGUUAUCGGUGAAAUUGU...................... len:30 al:1 ...........................................GUUAcUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:30 al:1 ...........................................GUUAUUGUUCUGCGUUAUCGGUGA............................ len:24 al:2 ...........................................GUUAUUGUUCUGCGUUAUCGGUa............................. len:23 al:1 ...........................................GUUAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:30 al:26 ............................................UUAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:29 al:4 .............................................UAUUGUUCUGCGUUAUCGGUG............................. len:21 al:1 .............................................UAUUGUUCUGCGUUAUCGGUGAAAUUGc...................... len:28 al:2 .............................................UAUUGUUCUGCGUUAUCGGUGAAAUUG....................... len:27 al:1 .............................................UAUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:28 al:4 ..............................................AUUGUUCUGCGUUAUCGGc.............................. len:19 al:1 ..............................................AUUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:27 al:1 ..............................................AUUGUUCUGCGUUAUCGGUGAAAUUG....................... len:26 al:1 ..............................................AUUGUUCUGCGUUAUCGGUGA............................ len:21 al:2 ...............................................UUGUUCUGCGUUAUCGGUGAAAUUGU...................... len:26 al:4 ...............................................UUGUUCUGCGUUAUCGGUGAAAUUG....................... len:25 al:2 ...............................................UUGUUCUGCGUUAUCGGUGAAAUUGc...................... len:26 al:1 ................................................UGUUCUGCGUUAUCGGUGAAAUUGU...................... len:25 al:3 ................................................UGUUCUGCGUUAUCGGUGAAAUUGc...................... len:25 al:1 ................................................UGUUCUGCGUUAUCGGUGAA........................... len:20 al:2 .................................................GUUCUGCGUUAUCGGUGAAAU......................... len:21 al:1 .................................................GUUCUGCGUUAUCGGUGAAAUUG....................... len:23 al:1 .................................................GUUCUGCGUUAUCGGUGAAAUUGUAACU.................. len:28 al:2 .................................................GcUCUGCGUUAUCGGUGAAAUUGU...................... len:24 al:4 .................................................GUUCUGCGUUAUCGGUGAAAUUGUAACUG................. len:29 al:1 .................................................GUUCUGCGUUAUCGGUGgAAUUGU...................... len:24 al:1 .................................................GUUCUGCGUUAUCGGUGAAAUUGc...................... len:24 al:4 .................................................GUUCUGCGUUAUCGGUGAAAUUGU...................... len:24 al:10 .................................................GUUCUGCGUUAUCGGUGAAAUU........................ len:22 al:1 ..................................................UUCUGCGUUAUCGGUGAAAUU........................ len:21 al:1 ..................................................aUCUGCGUUAUCGGUGAAAUUG....................... len:22 al:2 ..................................................UUCUGCGUUAUuGGUGAAAUUGU...................... len:23 al:1 ..................................................UUCUGCGUUAUCGGUGAAgUUGU...................... len:23 al:1 ..................................................UUCUGCGUUAUCGGUGAAAUUGU...................... len:23 al:91 ..................................................cUCUGCGUUAUCGGUGAAAUUGU...................... len:23 al:22 ..................................................UUCUGCGUUAUCGGUGAAAUUGUA..................... len:24 al:5 ..................................................UUCUGCGUUAUCGGUGAAAUUG....................... len:22 al:14 ..................................................UUCUGCGUUAUCGGUGAAAUUa....................... len:22 al:1 ..................................................UUCUGCGUUAUCGGUGAAAUUGc...................... len:23 al:15 ..................................................UUCUGCGUUAUCGGUGAAAUUGUAA.................... len:25 al:1 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...................................................UCUcCGUUAUCGGUGAAAUUG....................... len:21 al:1 ...................................................UCUGCGUUcUCGGUGAAAU......................... len:19 al:1 ...................................................UCUGCGUUAUCGGUGAAAUaGUA..................... len:23 al:1 ...................................................UCUGCGUUAUCGGUGAAAUUGUAAC................... len:25 al:3 ...................................................UCUGCGUUAUCGGUGAAAUUcU...................... len:22 al:57 ...................................................UCUGCGUUAUCGGUGAAu.......................... len:18 al:28 ...................................................UCUGCGUUgUCGGUGAAAUUGU...................... len:22 al:215 ...................................................UCUGCGUUAUCGGUGAAAaUG....................... len:21 al:4 ...................................................UCUGCGUUAcCGGUGAAAUUGU...................... len:22 al:164 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...................................................cCUGCGUUAUCGGUGAAAUUG....................... len:21 al:36 ...................................................UCUGCGUUgUCGGUGAAAUUGUA..................... len:23 al:2 ...................................................UCUGCGUUAUCGGUGgAAU......................... len:19 al:8 ...................................................UCUGCGUUAcCGGUGAAAUUGUA..................... len:23 al:2 ...................................................cCUGCGUUAUCGGUGAAAU......................... len:19 al:7 ...................................................UCUGCGUUAUCGGUGAAAUcGUA..................... len:23 al:3 ...................................................UCUGCGUUAUCGGUGAgAUUGU...................... len:22 al:688 ...................................................UCUGCGUUAUCGuUGAAAUUG....................... len:21 al:1 ...................................................UCUGCGUUAUCGaUGAAAUU........................ len:20 al:2 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...................................................UCUGCGUUAUCGGUGAA........................... len:17 al:22 ...................................................UCUGCGUUAUCGGUGgA........................... len:17 al:1 ...................................................UCUGCGUUAUCGGUGAAAUUGaA..................... len:23 al:2 ...................................................UCgGCGUUAUCGGUGAAAUUG....................... len:21 al:3 ...................................................UCUGCGUUAUCGGUGAAAUUGUcA.................... len:24 al:1 ...................................................UCUGCGUcAUCGGUGAAAUUG....................... len:21 al:13 ...................................................UCUaCGUUAUCGGUGAAAUUGU...................... len:22 al:98 ...................................................UaUGCGUUAUCGGUGAAAUUGU...................... len:22 al:12 ...................................................gCUGCGUUAUCGGUGAAAUU........................ len:20 al:1 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...................................................UCUGCGUUAUCGaUGAAAUUGUA..................... len:23 al:1 ...................................................UCUGCGUUAUCGGUGAAgUUGU...................... len:22 al:611 ...................................................UCUGCGUUAcCGGUGAAAUU........................ len:20 al:1 ...................................................UCUGCGUUAUCGGUGA............................ len:16 al:16 ...................................................UCUGCGUUAUCGGUGAAAUUGcA..................... len:23 al:33 ...................................................UCUGCGUUAUCGGUGAAAU......................... len:19 al:1287 ...................................................UCUGCGUUAUCGGUGAAuUU........................ len:20 al:1 ...................................................UCUGCGUUAUCGGcGAAAUUGU...................... len:22 al:455 ...................................................UCUGCGUUAgCGGUGAAAUUGU...................... len:22 al:8 ...................................................UuUGCGUUAUCGGUGAAAUUGUA..................... len:23 al:1 ...................................................UCUGCGUUAcCGGUGAAAUUG....................... len:21 al:12 ...................................................UCUGCGUUAUCuGUGAAAU......................... len:19 al:1 ...................................................UCUGCGUUAUCGGUGAAAUUGUgA.................... len:24 al:2 ...................................................UCUGCGUUgUCGGUGAAAU......................... len:19 al:3 ...................................................UCUaCGUUAUCGGUGAAAUUG....................... len:21 al:9 ...................................................UCUGCGUUAUCuGUGAAAUUGU...................... len:22 al:58 ...................................................UCUGCuUUAUCGGUGAAAUU........................ len:20 al:1 ...................................................UCUGCGUUAUCGGUGAAgUU........................ len:20 al:6 ...................................................UCUGCGUUAUCaGUGAAAUUGU...................... len:22 al:216 ...................................................UCaGCGUUAUCGGUGAAAUUGU...................... len:22 al:88 ...................................................UCUGCGUUAUCGGUGAAAcU........................ len:20 al:1 ...................................................UCUGCGUUAUCGGUGAAAUUGa...................... len:22 al:1728 ...................................................UCUGCGUUAUCGGcGAAAU......................... len:19 al:3 ...................................................UCUGuGUUAUCGGUGAAAUUG....................... len:21 al:18 ...................................................UCcGCGUUAUCGGUGAAAUUG....................... len:21 al:42 ...................................................UCUGCGUUAUCGGUGAAAUUGUu..................... len:23 al:1489 ...................................................aCUGCGUUAUCGGUGAAA.......................... len:18 al:1 ...................................................UCUGCGUUAUCGGUGAAAcUGU...................... len:22 al:277 ...................................................UCUGCGUaAUCGGUGAAA.......................... len:18 al:1 ...................................................UCUGCGUUAUCGGUGAAAgU........................ len:20 al:1 ...................................................UCaGCGUUAUCGGUGAAAUUG....................... len:21 al:14 ...................................................UCUGCGaUAUCGGUGAAAUUG....................... len:21 al:2 ...................................................UCUGCGUUAUCGGUGAAAUUGUAgC................... len:25 al:1 ...................................................UCUGCGUUAUCGGUGAuA.......................... len:18 al:3 ...................................................UCUGCGUUAUCGGUGAAAUUGUAg.................... len:24 al:7 ...................................................UCUGCGUUgUCGGUGAAAUUG....................... len:21 al:10 ...................................................UCUGCGUUAUCGGUGAAAUUGUc..................... len:23 al:161 ...................................................gCUGCGUUAUCGGUGAAAUUGUA..................... len:23 al:1 ...................................................UCUGCGUUAUuGGUGAAAUUGU...................... len:22 al:146 ...................................................UCUGCGUUAUCGGUGAAAUUa....................... len:21 al:508 ...................................................UCUGCGgUAUCGGUGAAAUUGU...................... len:22 al:18 ...................................................UCUGCGUUAUCGGUGAAAUUGUAgCU.................. len:26 al:1 ...................................................UCgGCGUUAUCGGUGAAAUUGU...................... len:22 al:16 ...................................................UCUGCGUUAUCaGUGA............................ len:16 al:1 ...................................................UCUGCGUUAUCGGUGAgAUUGUA..................... len:23 al:2 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...................................................UCUGCGUUAUCGGUGAAAUUGU...................... len:22 al:166245 ...................................................UCUGCGUUAUaGGUGAAAUUG....................... len:21 al:3 ...................................................UCUGCGUUgUCGGUGAAAUU........................ len:20 al:1 ...................................................UCUGCGUUAUCGGUGAAAUcGU...................... len:22 al:272 ...................................................UCUGaGUUAUCGGUGAAAUUGU...................... len:22 al:23 ...................................................UCUGCGUUAcCGGUGAAA.......................... len:18 al:1 ...................................................UCUuCGUUAUCGGUGAAAU......................... len:19 al:2 ...................................................UCcGCGUUAUCGGUGAAAUUGU...................... len:22 al:579 ...................................................UCUGCGUUAUCGGUGAAcUUG....................... len:21 al:5 ...................................................UCUGCGgUAUCGGUGAAAUU........................ len:20 al:2 ...................................................UCUGCGUUAUCGGUGAAuUUGUA..................... len:23 al:2 ...................................................UCUGCGUUAUCGGUGAAgUUG....................... len:21 al:52 ...................................................UCUGCGUUAUaGGUGAAAUUGU...................... len:22 al:20 ...................................................UCUGCGUUAUCGGUGAuAUUGU...................... len:22 al:20 ...................................................UCUGCGUUAUCGGUaAAAUUGU...................... len:22 al:54 ...................................................UCUGCGUUAUCuGUGAAAUUGUA..................... len:23 al:1 ...................................................UCUGCGUUAUCGaUGAAA.......................... len:18 al:1 ...................................................UCUGCGUUAUCGGUGAAAUaGU...................... len:22 al:15 ...................................................UCUGCGUUAUCGGUGAAuUUGU...................... len:22 al:52 ...................................................UCUGuGUUAUCGGUGAAAUUGU...................... len:22 al:237 ...................................................UCUGCGcUAUCGGUGAAAUUG....................... len:21 al:25 ...................................................UCcGCGUUAUCGGUGAAAU......................... len:19 al:1 ...................................................UCUGCGUUAUCGGUcAAAU......................... len:19 al:1 ...................................................UCUGCGUUAUCGGUGcAAUUGU...................... len:22 al:52 ...................................................UCUGCGUUAUCGGUGAAAUUG....................... len:21 al:11070 ...................................................UCUGCcUUAUCGGUGAAAUUGU...................... len:22 al:10 ...................................................UCUGgGUUAUCGGUGAAAUUGU...................... len:22 al:20 ...................................................UCUGCGUUAUCGGgGAAAUUGUA..................... len:23 al:2 ...................................................UCUGCGUUAUCGGUGAAAUUGUuA.................... len:24 al:40 ...................................................UCUGCGUUAaCGGUGAAAUUGU...................... len:22 al:2 ...................................................UCUGCGUUAUCGGUGAAAUUc....................... len:21 al:23 ...................................................UCUGCGUUAUCaGUGAAAUUGUA..................... len:23 al:2 ...................................................UCUGCGUUAUCGGUGAAAc......................... len:19 al:70 ...................................................UCUGCGUUAUCGuUGAAAUUGU...................... len:22 al:25 ...................................................aCUGCGUUAUCGGUGAAAUUG....................... len:21 al:2 ...................................................cCUGCGUUAUCGGUGAAAUUGU...................... len:22 al:518 ...................................................UCUGCGUUAUCGGUGAAAUUGUAAu................... len:25 al:6 ...................................................UCUGCGUUAUCaGUGAAAUU........................ len:20 al:4 ...................................................UCUGCGcUAUCGGUGAAA.......................... len:18 al:1 ...................................................UCUGCGUUAUCGGaGAAAUUGU...................... len:22 al:18 ...................................................UuUGCGUUAUCGGUGAAAUUG....................... len:21 al:6 ...................................................UCUGCGUUAUCGGUuAAAUUGU...................... len:22 al:18 ....................................................CUGCGUUAUCGGUGAAAUUG....................... len:20 al:26 ....................................................CUGCGUUAUCGGUGAAAUUGUu..................... len:22 al:5 ....................................................CUGCGUUAUCGGcGAAAUUGU...................... len:21 al:1 ....................................................CUGCGUUAUCGGUGAAAUc........................ len:19 al:1 ....................................................CUGCGUUAUCGGUGAAAUUGa...................... len:21 al:2 ....................................................CUGCGUUAUCGGUGAAAUUGUA..................... len:22 al:3 ....................................................CUGCGUUAUCGGUGAAAUUu....................... len:20 al:1 ....................................................CUGCGUUAUCGGUGAAAUU........................ len:19 al:5 ....................................................CUGCGUUAUCGGUGAAAUUGc...................... len:21 al:8 ....................................................CaGCGUUAUCGGUGAAAUUGU...................... len:21 al:1 ....................................................CUGCGUUAUCGGUGAAAUUGU...................... len:21 al:104 ....................................................CUGCGUUAUCGGUGAAAU......................... len:18 al:4 ....................................................uUGCGUUAUCGGUGAAAUUG....................... len:20 al:1 ....................................................uUGCGUUAUCGGUGAAAUUGU...................... len:21 al:1 .....................................................UGCGUUAUCGGUGAAAUU........................ len:18 al:3 .....................................................UGCGUUAUCGGUGAAAUUGUA..................... len:21 al:8 .....................................................UGCGUUAUCGGUGAAAUUG....................... len:19 al:15 .....................................................UGCGUUAUCGGUGAA........................... len:15 al:1 .....................................................UGCGUUAUCGGUGAAAUUGUu..................... len:21 al:3 .....................................................UGCGUUAUCGGUGAAAUUGU...................... len:20 al:198 .....................................................UGCGUUAUCGGUGAAA.......................... len:16 al:1 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......................................................GCGUUAUCGGUGAAAUUGa...................... len:19 al:2 .......................................................CGUUAUCGGUGAAAUUGc...................... len:18 al:4 .......................................................CGUUAUCGGUGAAAUUGU...................... len:18 al:21 .......................................................CGUUAUCGGUGAAAUUGUA..................... len:19 al:1 ........................................................GUUAUCGGUGAAAUUGc...................... len:17 al:1 ........................................................GUUAUCGGUGAAAUUGU...................... len:17 al:14 ........................................................GUUAUCGGUGAAAUUG....................... len:16 al:4 ........................................................GUUAUCGGUGAAAUUGUAA.................... len:19 al:1 ........................................................GUUAUCGGUGAAAUU........................ len:15 al:2 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.........................................................................AACUGUUGCCUUCUAUUGCa.. len:20 al:1 .........................................................................AACUGUUGCCUcCUAUUGC... len:19 al:1